Wall clock time and date at job start Mon Mar 30 2020 04:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.27311 * 57.90783 * 9 7 2 11 11 C 1.54599 * 110.30641 * 295.71656 * 9 7 2 12 12 C 1.54942 * 102.92043 * 219.12506 * 11 9 7 13 13 N 1.48535 * 103.22593 * 37.41662 * 12 11 9 14 14 C 1.46897 * 111.00063 * 200.27918 * 13 12 11 15 15 C 1.52996 * 109.47044 * 287.39798 * 14 13 12 16 16 H 1.09002 * 109.47201 * 305.00133 * 15 14 13 17 17 O 1.42897 * 109.47402 * 64.99805 * 15 14 13 18 18 C 1.53004 * 109.47498 * 184.99973 * 15 14 13 19 19 C 1.52990 * 109.47517 * 175.00047 * 18 15 14 20 20 F 1.39898 * 109.47450 * 59.99524 * 19 18 15 21 21 F 1.39901 * 109.47358 * 180.02562 * 19 18 15 22 22 F 1.39908 * 109.47122 * 299.99714 * 19 18 15 23 23 C 1.47907 * 105.81946 * 320.79101 * 13 12 11 24 24 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 25 25 H 1.08997 * 110.72959 * 337.48582 * 11 9 7 26 26 H 1.09007 * 110.72004 * 100.77146 * 11 9 7 27 27 H 1.09004 * 110.66755 * 278.98173 * 12 11 9 28 28 H 1.08997 * 110.80807 * 155.91820 * 12 11 9 29 29 H 1.09003 * 109.47069 * 47.39226 * 14 13 12 30 30 H 1.08992 * 109.47527 * 167.39736 * 14 13 12 31 31 H 0.96705 * 114.00416 * 59.99929 * 17 15 14 32 32 H 1.09007 * 109.46616 * 295.00282 * 18 15 14 33 33 H 1.09002 * 109.46980 * 54.99332 * 18 15 14 34 34 H 1.08999 * 109.91413 * 265.97901 * 23 13 12 35 35 H 1.08998 * 109.91352 * 144.68756 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5915 -2.5544 -0.8665 11 6 0.4385 -2.6495 1.3060 12 6 0.6034 -4.1523 1.6456 13 7 2.0066 -4.4379 1.2508 14 6 2.2125 -5.8775 1.0435 15 6 2.2148 -6.5923 2.3961 16 1 2.9605 -6.1359 3.0471 17 8 0.9237 -6.4779 2.9976 18 6 2.5528 -8.0705 2.1914 19 6 2.6777 -8.7584 3.5522 20 9 1.4664 -8.6484 4.2433 21 9 2.9874 -10.1098 3.3649 22 9 3.6944 -8.1459 4.2928 23 6 2.2346 -3.6841 -0.0012 24 1 -0.4850 -0.8401 0.0004 25 1 0.8592 -2.0272 2.0958 26 1 -0.6104 -2.4049 1.1382 27 1 -0.0910 -4.7570 1.0622 28 1 0.4608 -4.3262 2.7121 29 1 1.4079 -6.2741 0.4243 30 1 3.1682 -6.0398 0.5452 31 1 0.2093 -6.8638 2.4722 32 1 1.7607 -8.5477 1.6143 33 1 3.4967 -8.1561 1.6529 34 1 2.0424 -4.3257 -0.8611 35 1 3.2600 -3.3156 -0.0312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397591677.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:41 Heat of formation + Delta-G solvation = -236.690847 kcal Electronic energy + Delta-G solvation = -21096.515542 eV Core-core repulsion = 17291.858342 eV Total energy + Delta-G solvation = -3804.657200 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.01692 -48.55887 -48.46859 -40.27531 -38.27799 -35.30543 -33.43020 -31.88285 -29.97687 -28.09676 -25.99361 -24.35242 -22.76480 -21.88763 -21.52493 -19.48019 -19.33655 -18.97039 -18.63585 -17.28477 -16.84545 -16.48593 -16.12555 -15.67628 -15.46210 -15.38288 -14.95156 -14.88162 -14.67490 -14.66079 -14.46528 -14.40793 -13.93129 -13.33944 -13.12746 -13.00031 -12.82342 -12.66995 -12.48875 -12.11013 -11.97991 -11.91373 -11.72217 -11.49794 -10.90365 -10.52726 -10.43990 -9.28495 -8.56320 -6.28021 1.53885 1.62621 1.78834 1.83870 2.58871 2.74071 2.93486 3.12010 3.22022 3.28916 3.50281 3.84871 3.96024 4.01413 4.12666 4.24608 4.34914 4.42177 4.43356 4.57201 4.67520 4.83085 4.91373 4.98108 5.07357 5.28106 5.39757 5.49774 6.03189 6.14154 6.22683 6.28184 6.70368 6.79534 7.50695 8.82827 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.046757 B = 0.003797 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.691331 B = 7372.942174 C = 7498.218608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.032 4.032 3 Si 1.116 2.884 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.600 4.600 8 H 0.044 0.956 9 C 0.011 3.989 10 H -0.004 1.004 11 C -0.108 4.108 12 C 0.057 3.943 13 N -0.524 5.524 14 C 0.019 3.981 15 C 0.118 3.882 16 H 0.098 0.902 17 O -0.562 6.562 18 C -0.188 4.188 19 C 0.453 3.547 20 F -0.184 7.184 21 F -0.191 7.191 22 F -0.196 7.196 23 C 0.063 3.937 24 H 0.261 0.739 25 H 0.034 0.966 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.385 0.615 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.039 0.961 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -19.799 3.353 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.230 4.230 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.638 4.638 8 H 0.062 0.938 9 C -0.008 4.008 10 H 0.014 0.986 11 C -0.147 4.147 12 C -0.071 4.071 13 N -0.248 5.248 14 C -0.110 4.110 15 C 0.058 3.942 16 H 0.116 0.884 17 O -0.369 6.369 18 C -0.226 4.226 19 C 0.399 3.601 20 F -0.166 7.166 21 F -0.172 7.172 22 F -0.177 7.177 23 C -0.064 4.064 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.234 0.766 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.058 0.942 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.975 -17.748 4.243 18.914 hybrid contribution -0.807 -2.069 -0.873 2.386 sum 4.168 -19.817 3.370 20.529 Atomic orbital electron populations 1.70846 1.07753 1.30439 1.48777 1.27143 0.96685 1.06188 0.93006 0.82926 0.74272 0.71595 0.77269 1.19846 1.20890 1.20551 1.22418 0.93944 0.92849 1.54625 0.93779 1.19683 0.93809 0.94470 0.92810 0.98598 1.22503 0.97794 0.95820 0.98546 1.23199 0.88379 0.94217 1.01285 1.64600 1.23652 1.07376 1.29196 1.22986 1.03179 0.88104 0.96717 1.21750 0.86558 0.91252 0.94619 0.88379 1.86710 1.16717 1.83021 1.50440 1.23613 1.10043 0.97054 0.91892 1.20740 0.73277 0.76749 0.89332 1.93208 1.45422 1.95739 1.82222 1.93178 1.93069 1.35600 1.95387 1.93171 1.61363 1.82996 1.80195 1.22702 0.99718 0.94066 0.89964 0.92796 0.94715 0.94378 0.93516 0.89159 0.92659 0.88516 0.76554 0.84384 0.84099 0.94241 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.45 21.45 0.29 -57.04 16 2 C -0.03 -1.85 5.34 84.65 0.45 -1.39 16 3 Si 1.12 51.04 29.90 68.60 2.05 53.10 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.60 -33.96 8.38 25.60 0.21 -33.75 16 8 H 0.04 2.49 7.34 -2.91 -0.02 2.47 16 9 C 0.01 0.57 2.54 -10.66 -0.03 0.54 16 10 H 0.00 -0.22 7.95 -2.39 -0.02 -0.24 16 11 C -0.11 -5.05 5.57 31.80 0.18 -4.87 16 12 C 0.06 2.01 5.33 86.65 0.46 2.47 16 13 N -0.52 -17.91 5.24 -883.02 -4.63 -22.54 16 14 C 0.02 0.41 4.52 86.30 0.39 0.80 16 15 C 0.12 2.29 3.12 30.59 0.10 2.39 16 16 H 0.10 2.35 7.66 -2.39 -0.02 2.33 16 17 O -0.56 -12.18 9.17 -148.98 -1.37 -13.54 16 18 C -0.19 -2.29 5.01 30.59 0.15 -2.14 16 19 C 0.45 8.11 3.16 71.98 0.23 8.34 16 20 F -0.18 -3.97 15.75 44.97 0.71 -3.26 16 21 F -0.19 -3.43 17.32 44.97 0.78 -2.65 16 22 F -0.20 -4.28 16.71 44.97 0.75 -3.53 16 23 C 0.06 2.53 6.31 86.44 0.55 3.08 16 24 H 0.26 15.91 5.65 -92.71 -0.52 15.39 16 25 H 0.03 1.81 7.86 -2.39 -0.02 1.79 16 26 H 0.04 1.83 7.10 -2.38 -0.02 1.81 16 27 H 0.05 1.46 7.81 -2.38 -0.02 1.44 16 28 H 0.09 3.13 6.79 -2.39 -0.02 3.11 16 29 H 0.06 1.06 7.83 -2.39 -0.02 1.04 16 30 H 0.10 1.87 8.08 -2.39 -0.02 1.85 16 31 H 0.39 5.59 9.05 -74.05 -0.67 4.92 16 32 H 0.14 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.40 7.77 -2.39 -0.02 1.38 16 35 H 0.06 2.58 7.39 -2.39 -0.02 2.56 16 Total: -1.00 -68.52 292.70 1.96 -66.57 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.68 Total: 7.44 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 2.69 Total: -24.54 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -4.34 Total: -79.58 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.37 Total: -13.54 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 2.24 Total: -9.44 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.10 kcal Total: -68.52 1.96 -66.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397591677.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.126 kcal (2) G-P(sol) polarization free energy of solvation -68.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds