Wall clock time and date at job start Mon Mar 30 2020 04:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99941 * 2 1 4 4 H 1.48502 * 109.46991 * 269.01107 * 3 2 1 5 5 H 1.48505 * 109.47072 * 29.00373 * 3 2 1 6 6 H 1.48491 * 109.47197 * 149.00688 * 3 2 1 7 7 C 1.37868 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00387 * 353.80596 * 7 2 1 9 9 C 1.50703 * 120.00266 * 173.80384 * 7 2 1 10 10 H 1.09001 * 110.63958 * 332.36896 * 9 7 2 11 11 C 1.54593 * 110.72525 * 95.51957 * 9 7 2 12 12 C 1.53986 * 105.14199 * 140.49821 * 11 9 7 13 13 N 1.47896 * 107.05802 * 1.22479 * 12 11 9 14 14 C 1.46907 * 111.00428 * 214.15931 * 13 12 11 15 15 C 1.53001 * 109.46675 * 294.76806 * 14 13 12 16 16 H 1.09003 * 109.47097 * 58.83299 * 15 14 13 17 17 O 1.42901 * 109.47304 * 298.82848 * 15 14 13 18 18 C 1.53000 * 109.46868 * 178.83071 * 15 14 13 19 19 C 1.53002 * 109.47149 * 184.99768 * 18 15 14 20 20 F 1.39904 * 109.46947 * 60.00322 * 19 18 15 21 21 F 1.39901 * 109.47053 * 179.97438 * 19 18 15 22 22 F 1.39897 * 109.47202 * 300.00399 * 19 18 15 23 23 C 1.48533 * 105.81907 * 334.67003 * 13 12 11 24 24 H 0.97002 * 119.99747 * 0.02562 * 1 2 3 25 25 H 1.08997 * 110.31294 * 21.57595 * 11 9 7 26 26 H 1.09010 * 110.39243 * 259.45833 * 11 9 7 27 27 H 1.09005 * 109.91844 * 241.87541 * 12 11 9 28 28 H 1.09002 * 109.92022 * 120.57549 * 12 11 9 29 29 H 1.08999 * 109.47278 * 174.76631 * 14 13 12 30 30 H 1.09002 * 109.46825 * 54.76274 * 14 13 12 31 31 H 0.96698 * 114.00145 * 300.00838 * 17 15 14 32 32 H 1.08995 * 109.47171 * 305.00032 * 18 15 14 33 33 H 1.09000 * 109.46858 * 65.00023 * 18 15 14 34 34 H 1.09004 * 110.66576 * 157.64059 * 23 13 12 35 35 H 1.08996 * 110.66783 * 280.77119 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5176 2.0344 -1.3999 5 1 1.4362 2.6587 0.6789 6 1 3.5360 1.4464 0.7209 7 6 2.0045 -1.1940 0.0005 8 1 1.4693 -2.1266 0.1019 9 6 3.5050 -1.1979 -0.1403 10 1 3.8410 -0.3222 -0.6957 11 6 4.1845 -1.2599 1.2468 12 6 5.3853 -2.2064 1.0646 13 7 5.3956 -2.6260 -0.3536 14 6 5.8748 -4.0080 -0.4904 15 6 7.3409 -4.0843 -0.0594 16 1 7.4336 -3.7501 0.9740 17 8 8.1302 -3.2447 -0.9044 18 6 7.8315 -5.5290 -0.1741 19 6 9.2567 -5.6286 0.3736 20 9 9.2685 -5.2374 1.7168 21 9 9.7051 -6.9496 0.2692 22 9 10.0993 -4.7898 -0.3638 23 6 3.9921 -2.5005 -0.8232 24 1 -0.4850 0.8401 -0.0004 25 1 3.4946 -1.6624 1.9885 26 1 4.5259 -0.2691 1.5472 27 1 5.2720 -3.0783 1.7089 28 1 6.3108 -1.6825 1.3035 29 1 5.7849 -4.3225 -1.5301 30 1 5.2758 -4.6644 0.1409 31 1 8.0951 -3.4844 -1.8405 32 1 7.1750 -6.1824 0.4004 33 1 7.8224 -5.8337 -1.2206 34 1 3.9568 -2.4024 -1.9082 35 1 3.3983 -3.3530 -0.4934 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397591678.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:45 Heat of formation + Delta-G solvation = -233.647438 kcal Electronic energy + Delta-G solvation = -21000.276950 eV Core-core repulsion = 17195.751723 eV Total energy + Delta-G solvation = -3804.525228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.01103 -48.55634 -48.45893 -40.15159 -38.19801 -35.00517 -33.47448 -32.39538 -30.05530 -28.45678 -25.99203 -24.31995 -22.94331 -21.63373 -21.02309 -19.47287 -19.31606 -19.14717 -18.52986 -17.11853 -16.85199 -16.64159 -16.22351 -15.67854 -15.48122 -15.33326 -15.12509 -14.93499 -14.68893 -14.65297 -14.54068 -14.42299 -13.93652 -13.46551 -13.14196 -13.04841 -12.87823 -12.67980 -12.49528 -12.12587 -11.88192 -11.81802 -11.74330 -11.46842 -11.05088 -10.90242 -10.64818 -9.25602 -8.29695 -6.31954 1.36145 1.38893 1.50653 1.84613 2.36374 2.74974 2.95393 3.05631 3.12638 3.29645 3.60491 3.82750 3.95545 4.02082 4.13641 4.24851 4.43062 4.45912 4.50910 4.59491 4.72075 4.80740 4.94642 5.00490 5.13445 5.17595 5.39722 5.57321 5.64647 5.98039 6.23042 6.35110 6.73887 6.92517 7.33709 8.86862 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.047676 B = 0.003896 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.151200 B = 7184.583159 C = 7298.426515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.511 4.511 8 H 0.034 0.966 9 C 0.010 3.990 10 H 0.035 0.965 11 C -0.133 4.133 12 C 0.044 3.956 13 N -0.517 5.517 14 C 0.017 3.983 15 C 0.117 3.883 16 H 0.094 0.906 17 O -0.556 6.556 18 C -0.191 4.191 19 C 0.453 3.547 20 F -0.196 7.196 21 F -0.191 7.191 22 F -0.183 7.183 23 C 0.058 3.942 24 H 0.266 0.734 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.388 0.612 32 H 0.137 0.863 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.936 -12.362 -1.047 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.183 4.183 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.169 1.169 7 C -0.549 4.549 8 H 0.052 0.948 9 C -0.010 4.010 10 H 0.054 0.946 11 C -0.172 4.172 12 C -0.083 4.083 13 N -0.241 5.241 14 C -0.112 4.112 15 C 0.057 3.943 16 H 0.112 0.888 17 O -0.363 6.363 18 C -0.230 4.230 19 C 0.399 3.601 20 F -0.178 7.178 21 F -0.173 7.173 22 F -0.165 7.165 23 C -0.070 4.070 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.237 0.763 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.093 0.907 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 19.317 -11.655 -0.779 22.574 hybrid contribution -0.788 -0.035 0.254 0.829 sum 18.528 -11.689 -0.525 21.914 Atomic orbital electron populations 1.70057 1.08230 1.28064 1.52541 1.25885 0.95351 1.02948 0.94110 0.85844 0.79644 0.78866 0.79157 1.19479 1.21542 1.16891 1.21200 0.91391 0.93020 1.49319 0.94817 1.19942 0.93049 0.95007 0.93000 0.94648 1.22704 0.96164 0.98764 0.99542 1.22813 0.98278 0.98061 0.89189 1.64712 1.20415 1.21824 1.17099 1.22999 0.95302 0.89566 1.03291 1.21737 0.89254 0.87272 0.96045 0.88820 1.86663 1.69472 1.57617 1.22530 1.23657 0.90159 1.01532 1.07625 1.20741 0.90919 0.72918 0.75531 1.93164 1.97137 1.90999 1.36460 1.93179 1.91365 1.36842 1.95882 1.93210 1.74617 1.71853 1.76787 1.23052 0.86946 0.97327 0.99637 0.92552 0.92965 0.92954 0.93288 0.90520 0.88384 0.93042 0.76295 0.84517 0.84137 0.90717 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.63 13.96 21.44 0.30 -58.33 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.94 44.14 26.84 68.60 1.84 45.98 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.25 -10.77 6.06 99.48 0.60 -10.16 16 7 C -0.51 -28.43 8.82 25.60 0.23 -28.20 16 8 H 0.03 2.07 8.03 -2.91 -0.02 2.05 16 9 C 0.01 0.44 2.43 -10.34 -0.03 0.41 16 10 H 0.04 1.64 6.01 -2.39 -0.01 1.63 16 11 C -0.13 -5.33 6.28 31.47 0.20 -5.13 16 12 C 0.04 1.42 5.54 86.44 0.48 1.90 16 13 N -0.52 -15.90 5.19 -883.03 -4.58 -20.48 16 14 C 0.02 0.36 4.40 86.30 0.38 0.74 16 15 C 0.12 2.12 2.85 30.59 0.09 2.21 16 16 H 0.09 2.00 6.84 -2.39 -0.02 1.98 16 17 O -0.56 -11.61 11.69 -148.98 -1.74 -13.35 16 18 C -0.19 -2.24 5.01 30.60 0.15 -2.09 16 19 C 0.45 7.79 3.16 71.98 0.23 8.02 16 20 F -0.20 -4.08 16.71 44.97 0.75 -3.33 16 21 F -0.19 -3.35 17.32 44.97 0.78 -2.58 16 22 F -0.18 -3.77 15.75 44.97 0.71 -3.06 16 23 C 0.06 2.17 5.99 86.65 0.52 2.69 16 24 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.05 2.19 7.84 -2.39 -0.02 2.17 16 26 H 0.05 2.07 7.22 -2.38 -0.02 2.05 16 27 H 0.05 1.39 7.65 -2.38 -0.02 1.38 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.05 1.04 7.95 -2.39 -0.02 1.02 16 31 H 0.39 5.30 9.05 -74.06 -0.67 4.63 16 32 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 35 H 0.03 1.24 7.90 -2.39 -0.02 1.22 16 Total: -1.00 -67.45 295.19 1.10 -66.35 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.33 Total: 6.97 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 2.71 Total: -18.18 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -4.28 Total: -78.80 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.74 Total: -13.35 kcal Atomic # 9 Polarization: -11.21 SS G_CDS: 2.24 Total: -8.97 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.84 Total: 45.98 kcal Total: -67.45 1.10 -66.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397591678.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.294 kcal (2) G-P(sol) polarization free energy of solvation -67.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds