Wall clock time and date at job start Mon Mar 30 2020 04:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.27767 * 57.91036 * 9 7 2 11 11 C 1.54599 * 110.30739 * 295.71425 * 9 7 2 12 12 C 1.54936 * 102.92020 * 219.12954 * 11 9 7 13 13 N 1.48531 * 103.22830 * 37.41634 * 12 11 9 14 14 C 1.46904 * 111.00046 * 200.27790 * 13 12 11 15 15 C 1.52995 * 109.47196 * 287.39513 * 14 13 12 16 16 H 1.09002 * 109.47172 * 59.99958 * 15 14 13 17 17 O 1.42902 * 109.47173 * 299.99952 * 15 14 13 18 18 C 1.52997 * 109.46863 * 179.97438 * 15 14 13 19 19 C 1.53007 * 109.47066 * 185.00240 * 18 15 14 20 20 F 1.39898 * 109.47282 * 59.99675 * 19 18 15 21 21 F 1.39899 * 109.47284 * 180.02562 * 19 18 15 22 22 F 1.39904 * 109.47072 * 299.99932 * 19 18 15 23 23 C 1.47900 * 105.81910 * 320.79115 * 13 12 11 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.72311 * 337.48770 * 11 9 7 26 26 H 1.08995 * 110.72264 * 100.77265 * 11 9 7 27 27 H 1.09005 * 110.66576 * 278.98056 * 12 11 9 28 28 H 1.08997 * 110.80903 * 155.91611 * 12 11 9 29 29 H 1.09003 * 109.46662 * 47.40097 * 14 13 12 30 30 H 1.09002 * 109.47094 * 167.39423 * 14 13 12 31 31 H 0.96702 * 113.99945 * 300.00109 * 17 15 14 32 32 H 1.08995 * 109.47434 * 304.99726 * 18 15 14 33 33 H 1.08996 * 109.47734 * 65.00513 * 18 15 14 34 34 H 1.09001 * 109.91971 * 265.98062 * 23 13 12 35 35 H 1.09004 * 109.91694 * 144.68568 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8890 -0.6506 0.8673 11 6 4.0486 -0.5652 -1.3051 12 6 5.2677 -1.4592 -1.6444 13 7 4.8134 -2.8173 -1.2501 14 6 5.9572 -3.7155 -1.0425 15 6 6.5756 -4.0746 -2.3951 16 1 6.9131 -3.1657 -2.8931 17 8 5.5981 -4.7280 -3.2073 18 6 7.7672 -5.0095 -2.1788 19 6 8.4614 -5.2691 -3.5174 20 9 8.9106 -4.0571 -4.0525 21 9 9.5506 -6.1244 -3.3197 22 9 7.5571 -5.8636 -4.4041 23 6 4.0461 -2.6382 0.0016 24 1 -0.4850 0.8400 -0.0004 25 1 3.2995 -0.6183 -2.0952 26 1 4.3611 0.4654 -1.1370 27 1 6.1384 -1.1602 -1.0606 28 1 5.4900 -1.4225 -2.7108 29 1 6.7027 -3.2171 -0.4229 30 1 5.6197 -4.6244 -0.5445 31 1 5.2526 -5.5464 -2.8252 32 1 8.4717 -4.5464 -1.4880 33 1 7.4172 -5.9539 -1.7620 34 1 4.6975 -2.7927 0.8618 35 1 3.2143 -3.3420 0.0312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397591681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:53 Heat of formation + Delta-G solvation = -204.127370 kcal Electronic energy + Delta-G solvation = -21072.062618 eV Core-core repulsion = 17268.817476 eV Total energy + Delta-G solvation = -3803.245142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.22267 -47.77297 -47.63833 -38.91343 -37.11674 -33.22942 -32.32241 -30.97393 -28.50145 -27.27020 -24.33098 -23.15025 -22.03029 -20.43938 -19.41219 -18.68744 -18.52661 -17.81566 -16.94813 -16.18479 -15.79906 -15.25007 -14.92036 -14.56351 -14.43123 -14.26553 -14.13047 -13.84750 -13.82374 -13.45957 -13.39033 -12.72693 -12.61337 -12.42668 -12.13230 -11.77959 -11.55089 -11.29098 -10.91975 -10.73304 -10.57605 -10.15594 -10.00969 -9.88929 -9.46777 -9.02782 -8.55599 -7.90891 -6.06109 -4.04438 2.57504 3.28811 3.36583 3.37411 3.54951 3.71091 3.82067 4.29513 4.41613 4.42252 4.68802 4.80311 4.94300 5.10587 5.14635 5.25750 5.48487 5.59054 5.70505 5.83734 5.93582 6.00763 6.21679 6.55335 6.66710 6.82460 7.07693 7.11336 7.48969 7.61362 7.67271 7.77646 8.53162 8.97842 9.55992 11.07194 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.045384 B = 0.004035 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.802827 B = 6937.603074 C = 7107.051286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.293 1.293 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.005 3.995 10 H 0.031 0.969 11 C -0.129 4.129 12 C 0.034 3.966 13 N -0.502 5.502 14 C 0.017 3.983 15 C 0.113 3.887 16 H 0.108 0.892 17 O -0.533 6.533 18 C -0.204 4.204 19 C 0.456 3.544 20 F -0.185 7.185 21 F -0.191 7.191 22 F -0.172 7.172 23 C 0.055 3.945 24 H 0.263 0.737 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.374 0.626 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.023 0.977 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.107 -9.998 -3.629 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.220 1.220 7 C -0.542 4.542 8 H 0.094 0.906 9 C -0.015 4.015 10 H 0.049 0.951 11 C -0.167 4.167 12 C -0.093 4.093 13 N -0.226 5.226 14 C -0.112 4.112 15 C 0.052 3.948 16 H 0.126 0.874 17 O -0.337 6.337 18 C -0.243 4.243 19 C 0.402 3.598 20 F -0.166 7.166 21 F -0.172 7.172 22 F -0.153 7.153 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.221 0.779 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.041 0.959 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.744 -9.627 -4.450 20.672 hybrid contribution 1.076 0.789 0.879 1.598 sum 18.820 -8.838 -3.571 21.096 Atomic orbital electron populations 1.69900 1.06250 1.26863 1.50992 1.24988 0.94641 0.98928 0.94549 0.86922 0.79970 0.83896 0.78501 1.20191 1.19235 1.21997 1.21035 0.88197 0.94492 1.50484 0.90646 1.19996 0.97510 0.90963 0.93005 0.95132 1.22953 0.96060 0.96446 1.01254 1.23271 0.97015 0.89256 0.99788 1.64694 1.18242 1.08975 1.30670 1.22888 0.93979 0.98956 0.95372 1.21835 0.85598 0.94420 0.92944 0.87440 1.86713 1.58175 1.41913 1.46923 1.23713 1.01532 1.05628 0.93423 1.20408 0.77027 0.73990 0.88361 1.93181 1.89890 1.45282 1.88257 1.93178 1.57186 1.71613 1.95253 1.93237 1.66811 1.83944 1.71327 1.22933 0.96239 1.00239 0.87804 0.92698 0.90254 0.93405 0.95027 0.91069 0.94078 0.90485 0.77940 0.86607 0.86874 0.95885 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.51 24.86 -169.99 -4.23 17.28 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.23 6.40 56.52 0.36 -5.87 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 7 C -0.50 -13.95 8.96 -34.44 -0.31 -14.26 16 8 H 0.08 2.27 7.59 -52.49 -0.40 1.87 16 9 C 0.00 0.11 2.43 -90.41 -0.22 -0.11 16 10 H 0.03 0.71 7.09 -51.93 -0.37 0.35 16 11 C -0.13 -2.72 4.94 -24.87 -0.12 -2.85 16 12 C 0.03 0.59 5.91 -1.90 -0.01 0.58 16 13 N -0.50 -8.56 5.11 -230.45 -1.18 -9.73 16 14 C 0.02 0.21 4.37 -3.82 -0.02 0.20 16 15 C 0.11 1.22 2.94 -26.74 -0.08 1.14 16 16 H 0.11 1.30 6.89 -51.93 -0.36 0.94 16 17 O -0.53 -6.69 11.67 -35.23 -0.41 -7.10 16 18 C -0.20 -1.57 5.01 -26.73 -0.13 -1.70 16 19 C 0.46 4.52 3.16 37.16 0.12 4.64 16 20 F -0.18 -2.09 16.71 2.25 0.04 -2.06 16 21 F -0.19 -1.90 17.32 2.25 0.04 -1.86 16 22 F -0.17 -1.99 15.75 2.25 0.04 -1.96 16 23 C 0.05 1.06 6.31 -2.75 -0.02 1.04 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.08 1.84 7.86 -51.93 -0.41 1.43 16 26 H 0.05 0.98 6.17 -51.93 -0.32 0.66 16 27 H 0.03 0.49 7.81 -51.93 -0.41 0.09 16 28 H 0.07 1.16 7.80 -51.93 -0.40 0.75 16 29 H 0.04 0.46 7.83 -51.93 -0.41 0.06 16 30 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 31 H 0.37 3.43 9.05 45.56 0.41 3.84 16 32 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.02 0.40 7.77 -51.93 -0.40 -0.01 16 35 H 0.08 1.65 7.39 -51.93 -0.38 1.27 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -31.41 291.40 -5.31 -36.72 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -3.88 Total: 0.45 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -0.89 Total: -9.41 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.40 Total: -36.46 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.41 Total: -7.10 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.11 Total: -5.87 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.23 Total: 17.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.41 -5.31 -36.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397591681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.405 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds