Wall clock time and date at job start Mon Mar 30 2020 04:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08996 * 110.27767 * 57.91036 * 9 7 2 11 11 C 1.54599 * 110.30739 * 295.71425 * 9 7 2 12 12 C 1.54936 * 102.92020 * 219.12954 * 11 9 7 13 13 N 1.48531 * 103.22830 * 37.41634 * 12 11 9 14 14 C 1.46904 * 111.00046 * 200.27790 * 13 12 11 15 15 C 1.52995 * 109.47196 * 287.39513 * 14 13 12 16 16 H 1.09002 * 109.47172 * 59.99958 * 15 14 13 17 17 O 1.42902 * 109.47173 * 299.99952 * 15 14 13 18 18 C 1.52997 * 109.46863 * 179.97438 * 15 14 13 19 19 C 1.53007 * 109.47066 * 185.00240 * 18 15 14 20 20 F 1.39898 * 109.47282 * 59.99675 * 19 18 15 21 21 F 1.39899 * 109.47284 * 180.02562 * 19 18 15 22 22 F 1.39904 * 109.47072 * 299.99932 * 19 18 15 23 23 C 1.47900 * 105.81910 * 320.79115 * 13 12 11 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.72311 * 337.48770 * 11 9 7 26 26 H 1.08995 * 110.72264 * 100.77265 * 11 9 7 27 27 H 1.09005 * 110.66576 * 278.98056 * 12 11 9 28 28 H 1.08997 * 110.80903 * 155.91611 * 12 11 9 29 29 H 1.09003 * 109.46662 * 47.40097 * 14 13 12 30 30 H 1.09002 * 109.47094 * 167.39423 * 14 13 12 31 31 H 0.96702 * 113.99945 * 300.00109 * 17 15 14 32 32 H 1.08995 * 109.47434 * 304.99726 * 18 15 14 33 33 H 1.08996 * 109.47734 * 65.00513 * 18 15 14 34 34 H 1.09001 * 109.91971 * 265.98062 * 23 13 12 35 35 H 1.09004 * 109.91694 * 144.68568 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8890 -0.6506 0.8673 11 6 4.0486 -0.5652 -1.3051 12 6 5.2677 -1.4592 -1.6444 13 7 4.8134 -2.8173 -1.2501 14 6 5.9572 -3.7155 -1.0425 15 6 6.5756 -4.0746 -2.3951 16 1 6.9131 -3.1657 -2.8931 17 8 5.5981 -4.7280 -3.2073 18 6 7.7672 -5.0095 -2.1788 19 6 8.4614 -5.2691 -3.5174 20 9 8.9106 -4.0571 -4.0525 21 9 9.5506 -6.1244 -3.3197 22 9 7.5571 -5.8636 -4.4041 23 6 4.0461 -2.6382 0.0016 24 1 -0.4850 0.8400 -0.0004 25 1 3.2995 -0.6183 -2.0952 26 1 4.3611 0.4654 -1.1370 27 1 6.1384 -1.1602 -1.0606 28 1 5.4900 -1.4225 -2.7108 29 1 6.7027 -3.2171 -0.4229 30 1 5.6197 -4.6244 -0.5445 31 1 5.2526 -5.5464 -2.8252 32 1 8.4717 -4.5464 -1.4880 33 1 7.4172 -5.9539 -1.7620 34 1 4.6975 -2.7927 0.8618 35 1 3.2143 -3.3420 0.0312 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397591681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:52 Heat of formation + Delta-G solvation = -228.711683 kcal Electronic energy + Delta-G solvation = -21073.128674 eV Core-core repulsion = 17268.817476 eV Total energy + Delta-G solvation = -3804.311197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.00167 -48.54854 -48.44973 -40.14629 -38.23020 -35.01491 -33.45010 -32.40076 -30.07865 -28.45177 -25.95948 -24.28715 -22.94795 -21.71458 -21.14538 -19.46286 -19.31242 -18.99565 -18.64386 -17.09424 -16.77763 -16.67421 -16.06603 -15.96548 -15.38524 -15.34358 -14.93211 -14.89648 -14.68135 -14.66139 -14.59147 -14.42059 -14.05021 -13.44029 -13.13723 -13.08389 -12.83159 -12.74710 -12.47991 -12.15842 -11.88013 -11.80689 -11.62325 -11.42368 -11.03566 -10.88787 -10.71693 -9.16922 -8.26772 -6.29526 1.34680 1.36268 1.46193 1.85918 2.35845 2.75836 2.96629 3.08190 3.13942 3.30182 3.63297 3.82148 3.96716 4.03980 4.15009 4.25797 4.34635 4.44640 4.49800 4.59467 4.71913 4.75974 4.89868 5.00872 5.03142 5.20446 5.38184 5.48755 5.72652 6.10167 6.25387 6.37421 6.76410 6.93441 7.34684 8.90386 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.045384 B = 0.004035 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.802827 B = 6937.603074 C = 7107.051286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.009 3.991 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.242 1.242 6 H -0.295 1.295 7 C -0.508 4.508 8 H 0.031 0.969 9 C -0.003 4.003 10 H 0.034 0.966 11 C -0.130 4.130 12 C 0.045 3.955 13 N -0.521 5.521 14 C 0.017 3.983 15 C 0.116 3.884 16 H 0.095 0.905 17 O -0.559 6.559 18 C -0.189 4.189 19 C 0.452 3.548 20 F -0.195 7.195 21 F -0.191 7.191 22 F -0.185 7.185 23 C 0.064 3.936 24 H 0.264 0.736 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.386 0.614 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.050 0.950 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.251 -9.964 -3.125 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.165 1.165 6 H -0.222 1.222 7 C -0.546 4.546 8 H 0.049 0.951 9 C -0.022 4.022 10 H 0.052 0.948 11 C -0.168 4.168 12 C -0.083 4.083 13 N -0.245 5.245 14 C -0.111 4.111 15 C 0.056 3.944 16 H 0.113 0.887 17 O -0.366 6.366 18 C -0.228 4.228 19 C 0.398 3.602 20 F -0.177 7.177 21 F -0.173 7.173 22 F -0.167 7.167 23 C -0.063 4.063 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.235 0.765 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.068 0.932 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.920 -9.622 -3.945 23.362 hybrid contribution 0.056 0.658 0.698 0.960 sum 20.977 -8.964 -3.247 23.042 Atomic orbital electron populations 1.70065 1.08326 1.27905 1.53217 1.25895 0.95384 1.03093 0.94349 0.85872 0.79470 0.78699 0.79119 1.19242 1.16534 1.22168 1.21359 0.91153 0.92776 1.49304 0.95064 1.19993 0.94133 0.93993 0.94093 0.94796 1.22805 0.97168 0.97811 0.99062 1.23192 0.95820 0.88361 1.00894 1.64580 1.20798 1.09634 1.29516 1.23002 0.92803 0.98662 0.96633 1.21755 0.86209 0.94726 0.91737 0.88747 1.86677 1.58989 1.42875 1.48022 1.23651 1.00418 1.06358 0.92368 1.20782 0.76950 0.73492 0.88987 1.93161 1.90041 1.45920 1.88587 1.93177 1.57257 1.71609 1.95220 1.93213 1.67252 1.84165 1.72049 1.22662 0.96461 0.97083 0.90141 0.92698 0.93326 0.92532 0.92299 0.90155 0.91925 0.88824 0.76503 0.84070 0.84360 0.93181 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.38 13.96 21.45 0.30 -60.09 16 2 C 0.01 0.53 5.46 84.65 0.46 1.00 16 3 Si 0.94 44.25 24.86 68.60 1.71 45.95 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.24 -10.26 6.40 99.48 0.64 -9.62 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.51 -28.95 8.96 25.60 0.23 -28.72 16 8 H 0.03 1.99 7.59 -2.91 -0.02 1.97 16 9 C 0.00 -0.12 2.43 -10.66 -0.03 -0.15 16 10 H 0.03 1.51 7.09 -2.39 -0.02 1.49 16 11 C -0.13 -5.28 4.94 31.80 0.16 -5.13 16 12 C 0.04 1.41 5.91 86.65 0.51 1.92 16 13 N -0.52 -16.47 5.11 -883.01 -4.51 -20.99 16 14 C 0.02 0.35 4.37 86.30 0.38 0.73 16 15 C 0.12 2.14 2.94 30.59 0.09 2.23 16 16 H 0.09 2.00 6.89 -2.39 -0.02 1.99 16 17 O -0.56 -12.94 11.67 -148.98 -1.74 -14.68 16 18 C -0.19 -2.17 5.01 30.60 0.15 -2.01 16 19 C 0.45 7.84 3.16 71.98 0.23 8.07 16 20 F -0.20 -4.05 16.71 44.97 0.75 -3.29 16 21 F -0.19 -3.34 17.32 44.97 0.78 -2.56 16 22 F -0.19 -4.00 15.75 44.97 0.71 -3.29 16 23 C 0.06 2.38 6.31 86.45 0.55 2.92 16 24 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.05 2.24 7.86 -2.39 -0.02 2.22 16 26 H 0.06 2.16 6.17 -2.39 -0.01 2.15 16 27 H 0.06 1.55 7.81 -2.38 -0.02 1.53 16 28 H 0.08 2.39 7.80 -2.39 -0.02 2.37 16 29 H 0.06 1.06 7.83 -2.39 -0.02 1.04 16 30 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.39 6.32 9.05 -74.06 -0.67 5.65 16 32 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.57 7.77 -2.39 -0.02 1.55 16 35 H 0.06 2.31 7.39 -2.38 -0.02 2.29 16 Total: -1.00 -70.67 291.40 1.09 -69.58 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.37 Total: 8.52 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 2.73 Total: -19.15 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -4.21 Total: -81.07 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -1.74 Total: -14.68 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 2.24 Total: -9.15 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.71 Total: 45.95 kcal Total: -70.67 1.09 -69.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397591681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.135 kcal (2) G-P(sol) polarization free energy of solvation -70.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds