Wall clock time and date at job start Mon Mar 30 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47256 * 2 1 4 4 C 1.53003 * 109.47142 * 119.99282 * 2 1 3 5 5 N 1.46900 * 109.47407 * 305.00159 * 4 2 1 6 6 C 1.47844 * 111.00138 * 290.84412 * 5 4 2 7 7 C 1.54909 * 104.79474 * 213.63639 * 6 5 4 8 8 C 1.55146 * 101.65445 * 37.06651 * 7 6 5 9 9 H 1.08992 * 110.85253 * 82.79637 * 8 7 6 10 10 C 1.50693 * 110.70417 * 205.96602 * 8 7 6 11 11 H 1.08005 * 120.00085 * 113.60080 * 10 8 7 12 12 C 1.37872 * 120.00221 * 293.59623 * 10 8 7 13 13 N 1.31522 * 119.99993 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00349 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46701 * 60.00316 * 14 12 10 16 16 H 1.48498 * 109.47205 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47458 * 300.00551 * 14 12 10 18 18 C 1.47436 * 111.00013 * 169.99535 * 5 4 2 19 19 C 1.53001 * 109.47329 * 239.99731 * 2 1 3 20 20 F 1.39902 * 109.46747 * 179.97438 * 19 2 1 21 21 F 1.39892 * 109.47029 * 299.99793 * 19 2 1 22 22 F 1.39898 * 109.46839 * 59.99931 * 19 2 1 23 23 H 1.08997 * 109.46848 * 60.00342 * 1 2 3 24 24 H 1.08997 * 109.46819 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00440 * 1 2 3 26 26 H 0.96700 * 114.00311 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46682 * 65.00170 * 4 2 1 28 28 H 1.08999 * 109.47221 * 185.00335 * 4 2 1 29 29 H 1.09005 * 110.36966 * 332.46132 * 6 5 4 30 30 H 1.09000 * 110.37475 * 94.80562 * 6 5 4 31 31 H 1.09007 * 110.98833 * 278.97722 * 7 6 5 32 32 H 1.08990 * 110.99019 * 155.16161 * 7 6 5 33 33 H 0.96996 * 119.99575 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.89148 * 242.66398 * 18 5 4 35 35 H 1.09001 * 109.89054 * 3.85223 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.4543 -0.1017 2.4457 6 6 1.9963 1.2573 2.6581 7 6 2.0447 1.4278 4.1970 8 6 2.4547 0.0041 4.6574 9 1 3.5345 -0.1291 4.5912 10 6 1.9718 -0.2622 6.0598 11 1 1.2154 -1.0124 6.2372 12 6 2.4955 0.4519 7.1165 13 7 3.4163 1.3659 6.9005 14 14 1.8974 0.1215 8.8550 15 1 2.1673 -1.2949 9.2104 16 1 2.6114 1.0147 9.8024 17 1 0.4376 0.3821 8.9343 18 6 1.7293 -0.9101 3.6476 19 6 2.0400 -0.7213 -1.2492 20 9 3.4391 -0.7207 -1.2494 21 9 1.5738 -2.0402 -1.2491 22 9 1.5737 -0.0618 -2.3915 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.9703 1.4237 -0.0004 27 1 1.7516 -1.7714 1.2057 28 1 3.1263 -0.6441 1.2953 29 1 2.9981 1.3365 2.2359 30 1 1.3364 2.0027 2.2143 31 1 1.0649 1.6984 4.5909 32 1 2.7961 2.1628 4.4850 33 1 3.7845 1.8685 7.6439 34 1 0.7930 -1.2670 4.0768 35 1 2.3668 -1.7554 3.3882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397783211.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:51 Heat of formation + Delta-G solvation = -204.486581 kcal Electronic energy + Delta-G solvation = -21752.511007 eV Core-core repulsion = 17949.250289 eV Total energy + Delta-G solvation = -3803.260718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.24015 -47.75662 -47.69176 -39.12911 -36.93094 -33.33107 -32.16617 -29.82624 -28.27798 -26.70669 -25.46035 -23.86303 -21.17316 -20.11385 -19.66728 -18.69231 -18.45255 -18.36587 -16.62379 -16.04668 -15.29530 -14.88786 -14.56291 -14.45065 -14.36282 -14.15375 -14.09790 -13.87873 -13.83440 -13.26636 -13.06492 -12.56799 -12.40688 -12.12767 -11.97260 -11.69581 -11.34163 -11.07262 -11.01515 -10.73983 -10.71117 -10.40939 -9.97795 -9.64964 -9.33906 -8.90704 -8.41298 -7.75524 -6.05501 -4.08289 2.54607 3.30523 3.35344 3.37823 3.53944 3.60658 3.86908 4.27074 4.40970 4.62814 4.65985 4.87698 5.27453 5.45143 5.60380 5.72093 5.75612 5.81440 6.10906 6.17061 6.25152 6.31354 6.61158 6.79665 7.08899 7.15828 7.22993 7.49128 7.58335 7.63946 7.83645 7.94912 8.37154 8.93163 9.55963 11.04579 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.045201 B = 0.004481 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.313428 B = 6247.630842 C = 6356.156657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.106 3.894 3 O -0.523 6.523 4 C 0.024 3.976 5 N -0.520 5.520 6 C 0.044 3.956 7 C -0.108 4.108 8 C 0.035 3.965 9 H 0.030 0.970 10 C -0.512 4.512 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.891 5.891 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.047 3.953 19 C 0.422 3.578 20 F -0.186 7.186 21 F -0.179 7.179 22 F -0.178 7.178 23 H 0.064 0.936 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.381 0.619 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -2.513 -15.104 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.063 3.937 3 O -0.329 6.329 4 C -0.106 4.106 5 N -0.244 5.244 6 C -0.083 4.083 7 C -0.146 4.146 8 C 0.015 3.985 9 H 0.048 0.952 10 C -0.551 4.551 11 H 0.075 0.925 12 C -0.139 4.139 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.080 4.080 19 C 0.366 3.634 20 F -0.168 7.168 21 F -0.161 7.161 22 F -0.159 7.159 23 H 0.083 0.917 24 H 0.097 0.903 25 H 0.121 0.879 26 H 0.230 0.770 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.540 -2.242 -15.115 15.686 hybrid contribution 1.484 -0.505 0.759 1.742 sum -2.056 -2.748 -14.356 14.761 Atomic orbital electron populations 1.21709 0.88517 1.03814 1.04965 1.22460 0.98778 0.83597 0.88907 1.86735 1.27425 1.22698 1.96044 1.22844 0.97527 0.99023 0.91175 1.63579 1.55630 1.03385 1.01817 1.23198 0.96548 0.89678 0.98859 1.22683 1.01168 1.00612 0.90184 1.19808 0.95239 0.90203 0.93213 0.95208 1.21022 1.22442 1.20695 0.90893 0.92499 1.24973 0.94825 0.95046 0.99018 1.69947 1.27756 1.23570 1.31616 0.86661 0.78973 0.78108 0.84276 1.20301 1.21353 1.20199 1.23047 1.00029 0.95441 0.89487 1.21804 0.75562 0.78244 0.87743 1.93167 1.30373 1.96362 1.96882 1.93169 1.88383 1.37706 1.96806 1.93177 1.88325 1.80660 1.53773 0.91687 0.90328 0.87872 0.76972 0.89402 0.93637 0.95209 0.91009 0.92454 0.91263 0.92967 0.90867 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.39 37.16 0.31 -1.29 16 2 C 0.11 1.34 0.63 -90.62 -0.06 1.29 16 3 O -0.52 -6.65 10.40 -35.23 -0.37 -7.01 16 4 C 0.02 0.34 3.65 -3.82 -0.01 0.33 16 5 N -0.52 -9.01 4.18 -231.25 -0.97 -9.98 16 6 C 0.04 0.80 5.07 -2.30 -0.01 0.79 16 7 C -0.11 -2.42 5.94 -24.59 -0.15 -2.57 16 8 C 0.03 0.83 2.78 -89.95 -0.25 0.58 16 9 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 10 C -0.51 -13.69 8.47 -34.45 -0.29 -13.98 16 11 H 0.06 1.50 7.53 -52.48 -0.40 1.10 16 12 C 0.06 1.72 5.36 -17.82 -0.10 1.63 16 13 N -0.89 -25.15 12.48 55.43 0.69 -24.46 16 14 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.05 0.93 6.45 -2.84 -0.02 0.91 16 19 C 0.42 5.16 2.38 37.16 0.09 5.25 16 20 F -0.19 -2.31 16.51 2.25 0.04 -2.27 16 21 F -0.18 -2.21 16.19 2.25 0.04 -2.18 16 22 F -0.18 -2.25 16.74 2.25 0.04 -2.21 16 23 H 0.06 0.73 7.80 -51.93 -0.41 0.32 16 24 H 0.08 0.86 7.80 -51.93 -0.41 0.45 16 25 H 0.10 1.39 7.47 -51.93 -0.39 1.00 16 26 H 0.38 3.90 8.34 45.56 0.38 4.28 16 27 H 0.09 1.20 7.56 -51.93 -0.39 0.81 16 28 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 29 H 0.03 0.51 6.97 -51.93 -0.36 0.15 16 30 H 0.07 1.26 7.60 -51.93 -0.39 0.86 16 31 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 32 H 0.07 1.68 7.76 -51.93 -0.40 1.28 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.07 1.51 7.63 -51.93 -0.40 1.11 16 35 H 0.03 0.64 7.55 -51.93 -0.39 0.25 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -27.79 292.64 -5.55 -33.34 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.93 Total: 1.49 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -0.48 Total: -7.07 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.28 Total: -34.44 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.37 Total: -7.01 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 0.11 Total: -6.65 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.79 -5.55 -33.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397783211.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.149 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds