Wall clock time and date at job start Mon Mar 30 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47256 * 2 1 4 4 C 1.53003 * 109.47142 * 119.99282 * 2 1 3 5 5 N 1.46900 * 109.47407 * 305.00159 * 4 2 1 6 6 C 1.47844 * 111.00138 * 290.84412 * 5 4 2 7 7 C 1.54909 * 104.79474 * 213.63639 * 6 5 4 8 8 C 1.55146 * 101.65445 * 37.06651 * 7 6 5 9 9 H 1.08992 * 110.85253 * 82.79637 * 8 7 6 10 10 C 1.50693 * 110.70417 * 205.96602 * 8 7 6 11 11 H 1.08005 * 120.00085 * 113.60080 * 10 8 7 12 12 C 1.37872 * 120.00221 * 293.59623 * 10 8 7 13 13 N 1.31522 * 119.99993 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00349 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46701 * 60.00316 * 14 12 10 16 16 H 1.48498 * 109.47205 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47458 * 300.00551 * 14 12 10 18 18 C 1.47436 * 111.00013 * 169.99535 * 5 4 2 19 19 C 1.53001 * 109.47329 * 239.99731 * 2 1 3 20 20 F 1.39902 * 109.46747 * 179.97438 * 19 2 1 21 21 F 1.39892 * 109.47029 * 299.99793 * 19 2 1 22 22 F 1.39898 * 109.46839 * 59.99931 * 19 2 1 23 23 H 1.08997 * 109.46848 * 60.00342 * 1 2 3 24 24 H 1.08997 * 109.46819 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47286 * 300.00440 * 1 2 3 26 26 H 0.96700 * 114.00311 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46682 * 65.00170 * 4 2 1 28 28 H 1.08999 * 109.47221 * 185.00335 * 4 2 1 29 29 H 1.09005 * 110.36966 * 332.46132 * 6 5 4 30 30 H 1.09000 * 110.37475 * 94.80562 * 6 5 4 31 31 H 1.09007 * 110.98833 * 278.97722 * 7 6 5 32 32 H 1.08990 * 110.99019 * 155.16161 * 7 6 5 33 33 H 0.96996 * 119.99575 * 179.97438 * 13 12 10 34 34 H 1.09005 * 109.89148 * 242.66398 * 18 5 4 35 35 H 1.09001 * 109.89054 * 3.85223 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.4543 -0.1017 2.4457 6 6 1.9963 1.2573 2.6581 7 6 2.0447 1.4278 4.1970 8 6 2.4547 0.0041 4.6574 9 1 3.5345 -0.1291 4.5912 10 6 1.9718 -0.2622 6.0598 11 1 1.2154 -1.0124 6.2372 12 6 2.4955 0.4519 7.1165 13 7 3.4163 1.3659 6.9005 14 14 1.8974 0.1215 8.8550 15 1 2.1673 -1.2949 9.2104 16 1 2.6114 1.0147 9.8024 17 1 0.4376 0.3821 8.9343 18 6 1.7293 -0.9101 3.6476 19 6 2.0400 -0.7213 -1.2492 20 9 3.4391 -0.7207 -1.2494 21 9 1.5738 -2.0402 -1.2491 22 9 1.5737 -0.0618 -2.3915 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 2.9703 1.4237 -0.0004 27 1 1.7516 -1.7714 1.2057 28 1 3.1263 -0.6441 1.2953 29 1 2.9981 1.3365 2.2359 30 1 1.3364 2.0027 2.2143 31 1 1.0649 1.6984 4.5909 32 1 2.7961 2.1628 4.4850 33 1 3.7845 1.8685 7.6439 34 1 0.7930 -1.2670 4.0768 35 1 2.3668 -1.7554 3.3882 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397783211.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:50 Heat of formation + Delta-G solvation = -222.991071 kcal Electronic energy + Delta-G solvation = -21753.313422 eV Core-core repulsion = 17949.250289 eV Total energy + Delta-G solvation = -3804.063133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.21063 -48.72388 -48.66369 -40.42876 -38.26965 -35.05868 -33.55162 -31.37091 -29.96648 -27.74480 -26.97822 -25.52193 -22.32518 -21.60774 -21.37773 -19.72597 -19.44580 -19.35003 -18.56689 -17.26562 -16.71502 -16.29972 -16.10448 -15.65363 -15.52651 -15.26024 -15.11823 -14.84959 -14.81102 -14.58462 -14.38180 -14.23819 -13.78223 -13.33701 -13.25388 -13.12433 -12.93582 -12.72007 -12.62799 -12.38686 -12.15559 -12.05980 -11.51653 -11.30929 -11.04897 -10.88534 -10.45866 -9.20790 -8.13278 -6.22356 1.43415 1.44399 1.51781 1.54805 2.43582 2.52624 2.64395 2.87712 3.18816 3.30379 3.31158 3.59810 3.79610 4.15589 4.29331 4.45954 4.56059 4.58382 4.62854 4.81064 4.82508 5.00357 5.02699 5.28740 5.30872 5.42507 5.59611 5.74180 5.88956 6.12005 6.18826 6.35209 6.37557 6.86610 7.45222 8.96084 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.045201 B = 0.004481 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.313428 B = 6247.630842 C = 6356.156657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.113 3.887 3 O -0.532 6.532 4 C 0.022 3.978 5 N -0.516 5.516 6 C 0.061 3.939 7 C -0.103 4.103 8 C 0.025 3.975 9 H -0.001 1.001 10 C -0.529 4.529 11 H 0.057 0.943 12 C 0.013 3.987 13 N -0.921 5.921 14 Si 0.954 3.046 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.271 1.271 18 C 0.059 3.941 19 C 0.429 3.571 20 F -0.187 7.187 21 F -0.178 7.178 22 F -0.178 7.178 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.392 0.608 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.043 0.957 33 H 0.260 0.740 34 H 0.068 0.932 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.157 -3.148 -16.039 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.069 3.931 3 O -0.339 6.339 4 C -0.107 4.107 5 N -0.240 5.240 6 C -0.066 4.066 7 C -0.141 4.141 8 C 0.006 3.994 9 H 0.018 0.982 10 C -0.567 4.567 11 H 0.075 0.925 12 C -0.186 4.186 13 N -0.560 5.560 14 Si 0.779 3.221 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.196 1.196 18 C -0.068 4.068 19 C 0.373 3.627 20 F -0.168 7.168 21 F -0.160 7.160 22 F -0.160 7.160 23 H 0.092 0.908 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.243 0.757 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.198 -2.886 -16.067 16.856 hybrid contribution 1.718 -0.314 1.016 2.021 sum -2.480 -3.200 -15.051 15.586 Atomic orbital electron populations 1.21726 0.87988 1.04550 1.04727 1.22335 0.99129 0.83415 0.88212 1.86721 1.28593 1.22632 1.95970 1.22927 0.97620 0.99730 0.90425 1.63530 1.55888 1.02679 1.01854 1.23026 0.97648 0.90537 0.95364 1.22477 0.99115 0.98987 0.93567 1.19786 0.93753 0.92294 0.93595 0.98245 1.21420 1.22316 1.20499 0.92506 0.92524 1.25743 0.95025 0.94916 1.02867 1.70073 1.28900 1.24488 1.32541 0.85676 0.78572 0.78126 0.79680 1.19572 1.21214 1.19597 1.22795 0.99301 0.95189 0.89561 1.21622 0.75472 0.78127 0.87433 1.93173 1.30407 1.96356 1.96867 1.93176 1.88371 1.37644 1.96787 1.93180 1.88343 1.80706 1.53747 0.90761 0.89191 0.89247 0.75728 0.88243 0.93420 0.94026 0.89759 0.94185 0.93800 0.93103 0.91391 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.39 71.98 0.60 -2.27 16 2 C 0.11 2.56 0.63 -10.79 -0.01 2.56 16 3 O -0.53 -12.19 10.40 -148.98 -1.55 -13.74 16 4 C 0.02 0.58 3.65 86.30 0.31 0.90 16 5 N -0.52 -17.02 4.18 -885.52 -3.70 -20.72 16 6 C 0.06 2.16 5.07 86.77 0.44 2.60 16 7 C -0.10 -4.69 5.94 31.98 0.19 -4.50 16 8 C 0.03 1.22 2.78 -10.36 -0.03 1.19 16 9 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 10 C -0.53 -28.60 8.47 25.60 0.22 -28.38 16 11 H 0.06 2.99 7.53 -2.91 -0.02 2.96 16 12 C 0.01 0.73 5.36 84.65 0.45 1.19 16 13 N -0.92 -53.06 12.48 21.45 0.27 -52.79 16 14 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 16 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 C 0.06 2.30 6.45 86.65 0.56 2.86 16 19 C 0.43 9.38 2.38 71.98 0.17 9.55 16 20 F -0.19 -4.16 16.51 44.97 0.74 -3.42 16 21 F -0.18 -3.93 16.19 44.97 0.73 -3.20 16 22 F -0.18 -4.05 16.74 44.97 0.75 -3.30 16 23 H 0.07 1.46 7.80 -2.39 -0.02 1.45 16 24 H 0.09 1.72 7.80 -2.39 -0.02 1.70 16 25 H 0.09 2.22 7.47 -2.39 -0.02 2.20 16 26 H 0.39 7.04 8.34 -74.06 -0.62 6.42 16 27 H 0.10 2.42 7.56 -2.38 -0.02 2.41 16 28 H 0.05 1.26 7.65 -2.39 -0.02 1.25 16 29 H 0.04 1.37 6.97 -2.38 -0.02 1.35 16 30 H 0.08 2.80 7.60 -2.39 -0.02 2.78 16 31 H 0.04 1.92 8.04 -2.38 -0.02 1.90 16 32 H 0.04 2.19 7.76 -2.39 -0.02 2.17 16 33 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 34 H 0.07 2.74 7.63 -2.38 -0.02 2.72 16 35 H 0.05 1.67 7.55 -2.39 -0.02 1.65 16 Total: -1.00 -58.95 292.64 2.67 -56.28 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.49 Total: 10.04 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 2.91 Total: -14.30 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -3.44 Total: -73.51 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.55 Total: -13.74 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 2.22 Total: -9.92 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -58.95 2.67 -56.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397783211.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.712 kcal (2) G-P(sol) polarization free energy of solvation -58.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds