Wall clock time and date at job start Mon Mar 30 2020 04:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09008 * 110.63205 * 300.69961 * 9 7 2 11 11 C 1.55144 * 110.70915 * 63.80596 * 9 7 2 12 12 C 1.55112 * 101.55991 * 153.90443 * 11 9 7 13 13 N 1.47852 * 104.90740 * 323.16107 * 12 11 9 14 14 C 1.46895 * 111.00234 * 146.23837 * 13 12 11 15 15 C 1.53009 * 109.47011 * 69.15924 * 14 13 12 16 16 O 1.42894 * 109.47167 * 64.99818 * 15 14 13 17 17 C 1.42900 * 114.00135 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47273 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.47152 * 59.99985 * 18 17 16 20 20 F 1.39902 * 109.46703 * 179.97438 * 18 17 16 21 21 F 1.39904 * 109.46933 * 299.99807 * 18 17 16 22 22 C 1.47440 * 108.56344 * 23.97093 * 13 12 11 23 23 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 24 24 H 1.08998 * 110.98729 * 272.12734 * 11 9 7 25 25 H 1.08996 * 110.98905 * 35.94159 * 11 9 7 26 26 H 1.08998 * 110.42487 * 204.24263 * 12 11 9 27 27 H 1.09000 * 110.31089 * 82.01794 * 12 11 9 28 28 H 1.08996 * 109.47487 * 189.15491 * 14 13 12 29 29 H 1.08996 * 109.47135 * 309.16188 * 14 13 12 30 30 H 1.08997 * 109.46843 * 185.00153 * 15 14 13 31 31 H 1.09004 * 109.46669 * 304.99674 * 15 14 13 32 32 H 1.09000 * 109.47027 * 299.99830 * 17 16 15 33 33 H 1.09000 * 109.47218 * 59.99941 * 17 16 15 34 34 H 1.09004 * 109.89071 * 239.60605 * 22 13 12 35 35 H 1.08997 * 110.02468 * 118.49598 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6076 -2.5711 0.8775 11 6 0.4225 -2.6542 -1.3019 12 6 0.3221 -4.1972 -1.4245 13 7 1.6289 -4.7021 -0.9521 14 6 1.4777 -5.9907 -0.2632 15 6 1.0924 -7.0693 -1.2778 16 8 2.1653 -7.2585 -2.2024 17 6 1.9063 -8.2500 -3.1983 18 6 3.1162 -8.3679 -4.1275 19 9 4.2416 -8.7374 -3.3832 20 9 2.8628 -9.3390 -5.1021 21 9 3.3506 -7.1353 -4.7464 22 6 2.2273 -3.6928 -0.0594 23 1 -0.4850 -0.8401 -0.0004 24 1 -0.5639 -2.2033 -1.1932 25 1 0.9523 -2.2296 -2.1546 26 1 0.1562 -4.4863 -2.4623 27 1 -0.4817 -4.5754 -0.7928 28 1 2.4198 -6.2606 0.2137 29 1 0.6976 -5.9087 0.4936 30 1 0.8935 -8.0050 -0.7554 31 1 0.1982 -6.7574 -1.8177 32 1 1.7242 -9.2104 -2.7161 33 1 1.0292 -7.9623 -3.7780 34 1 3.1875 -3.3667 -0.4591 35 1 2.3637 -4.1106 0.9380 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397853158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:03 Heat of formation + Delta-G solvation = -201.790358 kcal Electronic energy + Delta-G solvation = -20748.174968 eV Core-core repulsion = 16945.031167 eV Total energy + Delta-G solvation = -3803.143801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.20251 -47.78142 -47.62679 -38.81984 -37.65561 -33.73422 -31.47977 -29.65716 -28.37744 -27.31598 -23.94337 -23.41491 -22.53254 -20.02544 -19.82165 -18.73074 -18.71232 -17.86044 -16.95763 -16.51530 -16.18633 -15.25657 -14.68796 -14.59552 -14.34430 -14.11661 -13.88137 -13.82749 -13.81024 -13.69927 -13.59145 -12.68003 -12.48643 -12.29240 -12.11504 -11.66963 -11.31905 -10.95239 -10.87968 -10.72199 -10.40995 -10.09330 -9.96328 -9.76789 -9.59353 -8.49371 -8.34199 -7.69360 -6.32864 -4.04916 2.33781 3.21653 3.45643 3.47430 3.65710 3.67871 3.83679 4.32276 4.43750 4.55527 4.72608 4.82275 5.04563 5.13562 5.30407 5.37704 5.58370 5.66543 5.82525 6.00334 6.04798 6.17181 6.37753 6.70564 6.73997 6.92871 6.95837 7.24606 7.39964 7.67854 7.75226 8.23683 8.44424 8.88952 9.66529 11.04806 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.032804 B = 0.003817 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.338870 B = 7333.742643 C = 7649.783224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 1.067 2.933 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.590 4.590 8 H 0.051 0.949 9 C 0.018 3.982 10 H 0.019 0.981 11 C -0.119 4.119 12 C 0.038 3.962 13 N -0.524 5.524 14 C 0.051 3.949 15 C 0.072 3.928 16 O -0.352 6.352 17 C 0.016 3.984 18 C 0.461 3.539 19 F -0.177 7.177 20 F -0.182 7.182 21 F -0.171 7.171 22 C 0.056 3.944 23 H 0.270 0.730 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.031 0.969 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.124 -18.492 -5.376 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.184 4.184 3 Si 0.896 3.104 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.628 4.628 8 H 0.069 0.931 9 C -0.002 4.002 10 H 0.037 0.963 11 C -0.157 4.157 12 C -0.089 4.089 13 N -0.248 5.248 14 C -0.078 4.078 15 C -0.004 4.004 16 O -0.271 6.271 17 C -0.062 4.062 18 C 0.407 3.593 19 F -0.159 7.159 20 F -0.164 7.164 21 F -0.153 7.153 22 C -0.071 4.071 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.462 -16.829 -5.796 17.859 hybrid contribution -0.419 -1.835 0.508 1.949 sum 1.043 -18.664 -5.288 19.426 Atomic orbital electron populations 1.70816 1.06874 1.30844 1.46532 1.25790 0.96533 1.02550 0.93549 0.83563 0.74905 0.75388 0.76562 1.21399 1.21502 1.20868 1.21907 0.94062 0.91142 1.55712 0.93079 1.19984 0.93346 0.94012 0.92815 0.96300 1.22905 1.00520 0.91289 1.01021 1.23159 0.89343 0.97633 0.98803 1.63612 1.22144 1.02056 1.36993 1.22285 1.01433 0.90361 0.93708 1.22705 0.89231 0.97887 0.90588 1.88081 1.41024 1.56465 1.41540 1.23449 0.94359 0.96215 0.92223 1.20201 0.85065 0.73910 0.80111 1.93207 1.54957 1.91410 1.76294 1.93190 1.94209 1.64016 1.64938 1.93250 1.95211 1.42982 1.83831 1.22871 0.99710 0.91681 0.92816 0.91788 0.92046 0.91641 0.91906 0.95073 0.90196 0.93179 0.92801 0.92621 0.89206 0.88944 0.90894 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.18 13.45 55.43 0.75 -26.43 16 2 C 0.02 0.56 5.34 -17.82 -0.10 0.47 16 3 Si 1.07 25.16 29.90 -169.99 -5.08 20.07 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.59 -16.51 8.48 -34.44 -0.29 -16.80 16 8 H 0.05 1.43 7.55 -52.49 -0.40 1.03 16 9 C 0.02 0.44 2.45 -89.95 -0.22 0.22 16 10 H 0.02 0.50 8.00 -51.92 -0.42 0.09 16 11 C -0.12 -2.72 5.78 -24.48 -0.14 -2.87 16 12 C 0.04 0.71 5.72 -2.18 -0.01 0.70 16 13 N -0.52 -9.86 5.11 -231.11 -1.18 -11.05 16 14 C 0.05 0.75 4.95 -3.82 -0.02 0.73 16 15 C 0.07 0.85 6.07 37.16 0.23 1.08 16 16 O -0.35 -4.72 10.18 -35.23 -0.36 -5.08 16 17 C 0.02 0.16 5.90 37.16 0.22 0.38 16 18 C 0.46 5.18 3.32 37.16 0.12 5.31 16 19 F -0.18 -2.22 17.26 2.25 0.04 -2.19 16 20 F -0.18 -1.86 17.32 2.25 0.04 -1.82 16 21 F -0.17 -2.36 17.26 2.25 0.04 -2.32 16 22 C 0.06 1.21 6.45 -2.84 -0.02 1.19 16 23 H 0.27 7.90 5.44 -40.82 -0.22 7.68 16 24 H 0.06 1.45 6.60 -51.93 -0.34 1.11 16 25 H 0.06 1.62 8.04 -51.93 -0.42 1.20 16 26 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 27 H 0.03 0.54 7.62 -51.93 -0.40 0.14 16 28 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 29 H 0.05 0.70 7.85 -51.93 -0.41 0.29 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.63 7.34 -51.93 -0.38 0.25 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.67 7.64 -51.93 -0.40 1.27 16 35 H 0.03 0.68 7.56 -51.93 -0.39 0.29 16 LS Contribution 300.49 15.07 4.53 4.53 Total: -1.00 -30.99 300.49 -6.13 -37.12 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.67 Total: -3.24 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: -0.23 Total: -9.60 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.44 Total: -37.48 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.36 Total: -5.08 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.12 Total: -6.33 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.99 -6.13 -37.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397853158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.670 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds