Wall clock time and date at job start Mon Mar 30 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47201 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99710 * 2 1 3 5 5 C 1.50697 * 109.47602 * 183.18781 * 4 2 1 6 6 H 1.08003 * 119.99244 * 355.15866 * 5 4 2 7 7 C 1.37875 * 120.00334 * 175.15437 * 5 4 2 8 8 N 1.31509 * 119.99508 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00122 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46842 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47004 * 120.00065 * 9 7 5 12 12 H 1.48496 * 109.47178 * 240.00155 * 9 7 5 13 13 N 1.46898 * 109.47418 * 239.99837 * 2 1 3 14 14 C 1.47444 * 110.99815 * 62.51262 * 13 2 1 15 15 C 1.54320 * 107.23293 * 236.74192 * 14 13 2 16 16 C 1.55137 * 103.01970 * 337.71898 * 15 14 13 17 17 O 1.42909 * 111.02113 * 277.54530 * 16 15 14 18 18 C 1.53002 * 110.98961 * 153.74592 * 16 15 14 19 19 F 1.39899 * 109.46940 * 307.72913 * 18 16 15 20 20 F 1.39897 * 109.47135 * 67.73147 * 18 16 15 21 21 F 1.39901 * 109.46866 * 187.73381 * 18 16 15 22 22 C 1.47840 * 110.99858 * 301.67260 * 13 2 1 23 23 H 1.08999 * 109.46891 * 67.00515 * 1 2 3 24 24 H 1.09000 * 109.46610 * 186.99960 * 1 2 3 25 25 H 1.08998 * 109.47100 * 306.99879 * 1 2 3 26 26 H 1.09005 * 109.46797 * 303.19128 * 4 2 1 27 27 H 1.08998 * 109.46846 * 63.18600 * 4 2 1 28 28 H 0.97008 * 119.99722 * 179.97438 * 8 7 5 29 29 H 1.08992 * 109.89067 * 356.15008 * 14 13 2 30 30 H 1.09003 * 109.88643 * 117.33547 * 14 13 2 31 31 H 1.09001 * 110.70321 * 96.10405 * 15 14 13 32 32 H 1.09003 * 110.70408 * 219.33457 * 15 14 13 33 33 H 0.96699 * 114.00022 * 292.28561 * 17 16 15 34 34 H 1.09006 * 110.37642 * 265.18879 * 22 13 2 35 35 H 1.08999 * 110.38020 * 27.42051 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5450 -0.6532 1.2895 6 1 4.0878 -0.2154 0.4647 7 6 4.2287 -1.1496 2.3790 8 7 3.5675 -1.6829 3.3829 9 14 6.0941 -1.0646 2.4290 10 1 6.5938 -0.4226 1.1867 11 1 6.5218 -0.2653 3.6052 12 1 6.6495 -2.4376 2.5352 13 7 2.0197 -0.6925 -1.1994 14 6 1.5969 0.0100 -2.4248 15 6 0.8126 -1.0030 -3.2850 16 6 1.3211 -2.3725 -2.7629 17 8 2.5616 -2.7269 -3.3776 18 6 0.2729 -3.4656 -2.9806 19 9 -0.9511 -3.0513 -2.4445 20 9 0.1251 -3.7036 -4.3512 21 9 0.6864 -4.6413 -2.3450 22 6 1.5131 -2.0803 -1.2538 23 1 -0.3633 0.4015 -0.9460 24 1 -0.3632 -1.0200 0.1252 25 1 -0.3633 0.6184 0.8207 26 1 1.6308 -0.2413 2.1383 27 1 1.7241 -1.7640 1.2212 28 1 4.0486 -2.0325 4.1493 29 1 0.9553 0.8524 -2.1666 30 1 2.4720 0.3616 -2.9714 31 1 -0.2598 -0.9012 -3.1185 32 1 1.0531 -0.8797 -4.3410 33 1 2.4916 -2.9189 -4.3228 34 1 2.2419 -2.7676 -0.8240 35 1 0.5623 -2.1583 -0.7266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411308502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:13 Heat of formation + Delta-G solvation = -194.768920 kcal Electronic energy + Delta-G solvation = -22163.699755 eV Core-core repulsion = 18360.860427 eV Total energy + Delta-G solvation = -3802.839329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.20440 -47.76187 -47.62673 -39.65990 -36.57430 -33.50356 -31.96557 -29.55428 -28.72135 -27.31995 -25.38462 -23.26775 -21.65790 -21.15240 -19.14852 -18.71243 -18.42712 -18.14227 -16.32046 -16.14298 -15.51238 -14.97505 -14.53789 -14.49235 -14.37002 -14.14478 -13.95065 -13.83112 -13.79622 -13.46417 -13.09932 -12.81890 -12.30797 -12.18371 -11.77336 -11.62866 -11.45854 -11.21831 -10.96575 -10.77592 -10.67437 -10.38149 -10.32973 -9.98002 -9.19171 -9.00795 -8.26169 -7.62276 -5.88247 -3.86404 2.53963 3.40323 3.47861 3.54136 3.55468 3.59725 3.78435 4.18828 4.48635 4.54404 4.58981 4.71346 5.12750 5.32915 5.48542 5.53194 5.64465 5.69082 5.81969 5.87795 5.94799 6.15520 6.31568 6.48138 6.59625 6.88683 7.27735 7.41241 7.54564 7.76193 7.91181 8.12683 8.57303 9.21333 9.76270 11.23718 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.006154 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.258123 B = 4549.161242 C = 4790.456122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.077 3.923 3 H 0.077 0.923 4 C 0.028 3.972 5 C -0.493 4.493 6 H 0.064 0.936 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.490 5.490 14 C 0.045 3.955 15 C -0.163 4.163 16 C 0.081 3.919 17 O -0.505 6.505 18 C 0.431 3.569 19 F -0.178 7.178 20 F -0.187 7.187 21 F -0.172 7.172 22 C 0.066 3.934 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.014 0.986 28 H 0.257 0.743 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.377 0.623 34 H 0.106 0.894 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.386 -0.423 -14.980 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.031 4.031 3 H 0.095 0.905 4 C -0.009 4.009 5 C -0.532 4.532 6 H 0.083 0.917 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.213 5.213 14 C -0.083 4.083 15 C -0.202 4.202 16 C 0.036 3.964 17 O -0.309 6.309 18 C 0.375 3.625 19 F -0.159 7.159 20 F -0.169 7.169 21 F -0.154 7.154 22 C -0.062 4.062 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.225 0.775 34 H 0.124 0.876 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.591 -0.419 -14.171 16.081 hybrid contribution -0.358 -0.417 -0.576 0.796 sum -7.949 -0.836 -14.746 16.773 Atomic orbital electron populations 1.22590 0.99594 1.01649 1.00870 1.22192 0.90098 0.98835 0.91937 0.90495 1.19213 0.96696 0.95033 0.89955 1.21240 0.91446 1.37673 1.02794 0.91729 1.25019 0.98126 0.95884 0.95875 1.69975 1.35108 1.41397 1.07962 0.86561 0.86373 0.77501 0.77724 1.19681 1.21427 1.21314 1.63822 1.56508 0.99787 1.01142 1.22824 0.98083 0.95838 0.91512 1.23506 1.01448 0.93677 1.01581 1.23634 0.83147 0.90030 0.99543 1.86848 1.26829 1.90194 1.27072 1.21433 0.82994 0.84301 0.73725 1.93173 1.46608 1.90054 1.86074 1.93149 1.96114 1.95265 1.32361 1.93226 1.89987 1.50378 1.81760 1.23090 1.01637 0.93721 0.87718 0.93762 0.92777 0.92154 0.95746 0.96774 0.93357 0.92095 0.90328 0.89702 0.89516 0.77511 0.87579 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 8.55 37.16 0.32 -2.74 16 2 C 0.08 1.52 2.18 -67.71 -0.15 1.37 16 3 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 4 C 0.03 0.70 4.33 -27.88 -0.12 0.58 16 5 C -0.49 -13.78 8.81 -34.44 -0.30 -14.08 16 6 H 0.06 1.82 7.70 -52.48 -0.40 1.41 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.49 -9.04 4.81 -223.29 -1.08 -10.12 16 14 C 0.05 0.65 6.25 -2.83 -0.02 0.63 16 15 C -0.16 -1.93 6.04 -24.91 -0.15 -2.08 16 16 C 0.08 1.13 0.79 -88.48 -0.07 1.06 16 17 O -0.50 -7.01 13.20 -35.23 -0.47 -7.48 16 18 C 0.43 5.76 2.51 37.16 0.09 5.86 16 19 F -0.18 -2.41 15.75 2.25 0.04 -2.38 16 20 F -0.19 -2.22 16.78 2.25 0.04 -2.19 16 21 F -0.17 -2.59 17.09 2.25 0.04 -2.56 16 22 C 0.07 1.17 4.12 -2.30 -0.01 1.16 16 23 H 0.04 0.61 6.32 -51.93 -0.33 0.29 16 24 H 0.05 0.89 6.23 -51.93 -0.32 0.57 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.01 0.37 7.07 -51.93 -0.37 0.00 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.06 0.80 6.21 -51.93 -0.32 0.48 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.94 7.27 -51.93 -0.38 0.57 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.38 3.44 8.63 45.56 0.39 3.83 16 34 H 0.11 2.19 8.13 -51.93 -0.42 1.77 16 35 H 0.07 1.26 4.87 -51.93 -0.25 1.01 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -30.93 292.26 -5.47 -36.39 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.65 Total: 0.12 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.51 Total: -6.89 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.34 Total: -36.64 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.47 Total: -7.48 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.11 Total: -7.12 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.93 -5.47 -36.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411308502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.375 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds