Wall clock time and date at job start Mon Mar 30 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47201 * 2 1 4 4 C 1.53002 * 109.47405 * 119.99710 * 2 1 3 5 5 C 1.50697 * 109.47602 * 183.18781 * 4 2 1 6 6 H 1.08003 * 119.99244 * 355.15866 * 5 4 2 7 7 C 1.37875 * 120.00334 * 175.15437 * 5 4 2 8 8 N 1.31509 * 119.99508 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00122 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46842 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47004 * 120.00065 * 9 7 5 12 12 H 1.48496 * 109.47178 * 240.00155 * 9 7 5 13 13 N 1.46898 * 109.47418 * 239.99837 * 2 1 3 14 14 C 1.47444 * 110.99815 * 62.51262 * 13 2 1 15 15 C 1.54320 * 107.23293 * 236.74192 * 14 13 2 16 16 C 1.55137 * 103.01970 * 337.71898 * 15 14 13 17 17 O 1.42909 * 111.02113 * 277.54530 * 16 15 14 18 18 C 1.53002 * 110.98961 * 153.74592 * 16 15 14 19 19 F 1.39899 * 109.46940 * 307.72913 * 18 16 15 20 20 F 1.39897 * 109.47135 * 67.73147 * 18 16 15 21 21 F 1.39901 * 109.46866 * 187.73381 * 18 16 15 22 22 C 1.47840 * 110.99858 * 301.67260 * 13 2 1 23 23 H 1.08999 * 109.46891 * 67.00515 * 1 2 3 24 24 H 1.09000 * 109.46610 * 186.99960 * 1 2 3 25 25 H 1.08998 * 109.47100 * 306.99879 * 1 2 3 26 26 H 1.09005 * 109.46797 * 303.19128 * 4 2 1 27 27 H 1.08998 * 109.46846 * 63.18600 * 4 2 1 28 28 H 0.97008 * 119.99722 * 179.97438 * 8 7 5 29 29 H 1.08992 * 109.89067 * 356.15008 * 14 13 2 30 30 H 1.09003 * 109.88643 * 117.33547 * 14 13 2 31 31 H 1.09001 * 110.70321 * 96.10405 * 15 14 13 32 32 H 1.09003 * 110.70408 * 219.33457 * 15 14 13 33 33 H 0.96699 * 114.00022 * 292.28561 * 17 16 15 34 34 H 1.09006 * 110.37642 * 265.18879 * 22 13 2 35 35 H 1.08999 * 110.38020 * 27.42051 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5450 -0.6532 1.2895 6 1 4.0878 -0.2154 0.4647 7 6 4.2287 -1.1496 2.3790 8 7 3.5675 -1.6829 3.3829 9 14 6.0941 -1.0646 2.4290 10 1 6.5938 -0.4226 1.1867 11 1 6.5218 -0.2653 3.6052 12 1 6.6495 -2.4376 2.5352 13 7 2.0197 -0.6925 -1.1994 14 6 1.5969 0.0100 -2.4248 15 6 0.8126 -1.0030 -3.2850 16 6 1.3211 -2.3725 -2.7629 17 8 2.5616 -2.7269 -3.3776 18 6 0.2729 -3.4656 -2.9806 19 9 -0.9511 -3.0513 -2.4445 20 9 0.1251 -3.7036 -4.3512 21 9 0.6864 -4.6413 -2.3450 22 6 1.5131 -2.0803 -1.2538 23 1 -0.3633 0.4015 -0.9460 24 1 -0.3632 -1.0200 0.1252 25 1 -0.3633 0.6184 0.8207 26 1 1.6308 -0.2413 2.1383 27 1 1.7241 -1.7640 1.2212 28 1 4.0486 -2.0325 4.1493 29 1 0.9553 0.8524 -2.1666 30 1 2.4720 0.3616 -2.9714 31 1 -0.2598 -0.9012 -3.1185 32 1 1.0531 -0.8797 -4.3410 33 1 2.4916 -2.9189 -4.3228 34 1 2.2419 -2.7676 -0.8240 35 1 0.5623 -2.1583 -0.7266 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411308502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:13 Heat of formation + Delta-G solvation = -217.871339 kcal Electronic energy + Delta-G solvation = -22164.701552 eV Core-core repulsion = 18360.860427 eV Total energy + Delta-G solvation = -3803.841125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.26800 -48.78271 -48.73966 -40.90992 -37.84170 -35.25723 -33.69952 -30.83126 -29.99138 -29.15841 -26.57258 -25.15223 -23.07775 -22.24915 -20.53075 -19.87789 -19.50319 -19.27343 -18.35925 -17.48403 -16.73707 -16.36426 -16.23681 -15.57145 -15.52658 -15.38660 -15.17368 -14.92757 -14.89042 -14.64712 -14.44170 -14.30898 -13.93713 -13.65922 -13.31102 -13.09472 -12.90463 -12.69805 -12.55920 -12.34047 -12.24612 -12.06300 -11.67210 -11.37238 -11.13299 -11.02707 -10.49286 -9.00101 -8.10409 -6.15109 1.40850 1.42517 1.45473 1.55637 2.47082 2.48174 2.54109 2.71522 3.11968 3.19421 3.30870 3.43508 3.58327 4.10342 4.19127 4.29939 4.35359 4.50870 4.56013 4.70721 4.70964 4.86692 4.97180 5.10937 5.20755 5.26914 5.46308 5.70891 5.89270 6.17703 6.29494 6.47172 6.50441 7.00213 7.51420 9.01764 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.006154 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.258123 B = 4549.161242 C = 4790.456122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.087 3.913 3 H 0.075 0.925 4 C 0.033 3.967 5 C -0.501 4.501 6 H 0.060 0.940 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.955 3.045 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.517 5.517 14 C 0.043 3.957 15 C -0.150 4.150 16 C 0.089 3.911 17 O -0.523 6.523 18 C 0.436 3.564 19 F -0.177 7.177 20 F -0.173 7.173 21 F -0.186 7.186 22 C 0.064 3.936 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.063 0.937 26 H -0.002 1.002 27 H -0.010 1.010 28 H 0.258 0.742 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.398 0.602 34 H 0.062 0.938 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.686 0.479 -17.266 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.022 4.022 3 H 0.093 0.907 4 C -0.004 4.004 5 C -0.539 4.539 6 H 0.078 0.922 7 C -0.202 4.202 8 N -0.582 5.582 9 Si 0.781 3.219 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.240 5.240 14 C -0.084 4.084 15 C -0.189 4.189 16 C 0.044 3.956 17 O -0.331 6.331 18 C 0.381 3.619 19 F -0.159 7.159 20 F -0.155 7.155 21 F -0.168 7.168 22 C -0.064 4.064 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.016 0.984 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.250 0.750 34 H 0.080 0.920 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.896 0.490 -16.493 18.292 hybrid contribution -0.252 -0.718 0.112 0.769 sum -8.147 -0.228 -16.381 18.297 Atomic orbital electron populations 1.22459 0.96757 1.01641 1.02808 1.21862 0.92326 0.97673 0.90309 0.90711 1.19068 0.95348 0.94016 0.91961 1.21565 0.93117 1.36853 1.02377 0.92157 1.25863 1.02881 0.95757 0.95704 1.70098 1.36922 1.42570 1.08646 0.85535 0.80773 0.77491 0.78068 1.18904 1.20598 1.21174 1.63604 1.57792 1.00355 1.02268 1.22900 0.99052 0.96545 0.89897 1.23512 1.01729 0.90710 1.02909 1.23398 0.83437 0.91542 0.97174 1.86801 1.26913 1.90366 1.29061 1.21298 0.82800 0.83637 0.74161 1.93175 1.46535 1.89983 1.86186 1.93177 1.96036 1.95145 1.31120 1.93203 1.90168 1.51222 1.82186 1.22864 1.00043 0.92803 0.90660 0.90477 0.93412 0.91840 0.98410 0.99184 0.93296 0.90467 0.89965 0.88298 0.86131 0.75006 0.92004 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.54 8.55 71.98 0.62 -4.92 16 2 C 0.09 3.39 2.18 44.92 0.10 3.49 16 3 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 4 C 0.03 1.73 4.33 29.85 0.13 1.85 16 5 C -0.50 -28.68 8.81 25.60 0.23 -28.46 16 6 H 0.06 3.44 7.70 -2.91 -0.02 3.42 16 7 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 8 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 9 Si 0.96 46.26 29.54 68.60 2.03 48.29 16 10 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 13 N -0.52 -18.76 4.81 -860.37 -4.14 -22.90 16 14 C 0.04 1.10 6.25 86.65 0.54 1.64 16 15 C -0.15 -2.98 6.04 31.77 0.19 -2.79 16 16 C 0.09 2.32 0.79 -9.41 -0.01 2.31 16 17 O -0.52 -13.62 13.20 -148.98 -1.97 -15.59 16 18 C 0.44 10.88 2.51 71.98 0.18 11.06 16 19 F -0.18 -4.46 15.75 44.97 0.71 -3.75 16 20 F -0.17 -3.61 16.78 44.97 0.75 -2.85 16 21 F -0.19 -5.54 17.09 44.97 0.77 -4.77 16 22 C 0.06 2.29 4.12 86.77 0.36 2.65 16 23 H 0.08 1.89 6.32 -2.39 -0.02 1.87 16 24 H 0.05 1.54 6.23 -2.39 -0.01 1.53 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.00 -0.14 8.14 -2.38 -0.02 -0.15 16 27 H -0.01 -0.57 7.07 -2.39 -0.02 -0.59 16 28 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 29 H 0.08 1.73 6.21 -2.39 -0.01 1.72 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.10 1.74 7.27 -2.39 -0.02 1.72 16 32 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.40 6.16 8.63 -74.06 -0.64 5.52 16 34 H 0.06 2.70 8.13 -2.38 -0.02 2.68 16 35 H 0.07 2.48 4.87 -2.39 -0.01 2.47 16 Total: -1.00 -68.40 292.26 1.71 -66.69 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 0.48 Total: 5.97 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 2.79 Total: -13.06 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -3.86 Total: -80.94 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.97 Total: -15.59 kcal Atomic # 9 Polarization: -13.60 SS G_CDS: 2.23 Total: -11.37 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -68.40 1.71 -66.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411308502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.177 kcal (2) G-P(sol) polarization free energy of solvation -68.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds