Wall clock time and date at job start Mon Mar 30 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47037 * 2 1 4 4 C 1.53005 * 109.47193 * 119.99345 * 2 1 3 5 5 C 1.50703 * 109.47398 * 183.11703 * 4 2 1 6 6 H 1.08000 * 119.99728 * 1.71938 * 5 4 2 7 7 C 1.37867 * 120.00026 * 181.71453 * 5 4 2 8 8 N 1.31514 * 120.00115 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00041 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47211 * 90.00078 * 9 7 5 11 11 H 1.48501 * 109.47507 * 210.00344 * 9 7 5 12 12 H 1.48504 * 109.47287 * 330.00372 * 9 7 5 13 13 N 1.46901 * 109.47548 * 239.99693 * 2 1 3 14 14 C 1.47899 * 110.99859 * 296.87425 * 13 2 1 15 15 C 1.53998 * 107.05422 * 145.84341 * 14 13 2 16 16 C 1.54588 * 105.14142 * 358.77423 * 15 14 13 17 17 O 1.42898 * 110.72319 * 96.57897 * 16 15 14 18 18 C 1.53005 * 110.72347 * 219.68574 * 16 15 14 19 19 F 1.39893 * 109.47083 * 58.54551 * 18 16 15 20 20 F 1.39901 * 109.46896 * 178.54687 * 18 16 15 21 21 F 1.39895 * 109.46883 * 298.54711 * 18 16 15 22 22 C 1.48531 * 110.99754 * 54.26949 * 13 2 1 23 23 H 1.09004 * 109.46908 * 172.53949 * 1 2 3 24 24 H 1.08995 * 109.47419 * 292.53599 * 1 2 3 25 25 H 1.09002 * 109.47280 * 52.54526 * 1 2 3 26 26 H 1.08997 * 109.47060 * 303.12244 * 4 2 1 27 27 H 1.09000 * 109.46531 * 63.12195 * 4 2 1 28 28 H 0.97004 * 119.99642 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.91796 * 26.48942 * 14 13 2 30 30 H 1.09004 * 109.91538 * 265.19417 * 14 13 2 31 31 H 1.09000 * 110.30635 * 239.85435 * 15 14 13 32 32 H 1.08997 * 110.30689 * 117.69493 * 15 14 13 33 33 H 0.96703 * 113.99833 * 63.85674 * 17 16 15 34 34 H 1.09004 * 110.66762 * 81.85034 * 22 13 2 35 35 H 1.08999 * 110.66866 * 318.71824 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5450 -0.6546 1.2886 6 1 4.0824 -0.1248 0.5161 7 6 4.2358 -1.2700 2.3108 8 7 3.5814 -1.9155 3.2514 9 14 6.1013 -1.1869 2.3599 10 1 6.5234 0.0109 3.1296 11 1 6.6343 -2.4088 3.0142 12 1 6.6294 -1.0966 0.9749 13 7 2.0197 -0.6925 -1.1994 14 6 1.6079 -2.1131 -1.1964 15 6 1.3523 -2.5123 -2.6616 16 6 1.6132 -1.2279 -3.4815 17 8 2.9416 -1.2253 -4.0081 18 6 0.5864 -1.0861 -4.6069 19 9 -0.7014 -1.0526 -4.0617 20 9 0.8262 0.0994 -5.3101 21 9 0.6959 -2.1753 -5.4779 22 6 1.4337 -0.1036 -2.4306 23 1 -0.3633 -1.0190 -0.1334 24 1 -0.3634 0.3938 0.9491 25 1 -0.3634 0.6250 -0.8158 26 1 1.6316 -0.2405 2.1384 27 1 1.7230 -1.7637 1.2218 28 1 4.0675 -2.3487 3.9704 29 1 0.6946 -2.2337 -0.6139 30 1 2.4032 -2.7293 -0.7770 31 1 0.3207 -2.8400 -2.7899 32 1 2.0410 -3.3009 -2.9645 33 1 3.1151 -1.9354 -4.6412 34 1 1.9810 0.7911 -2.7273 35 1 0.3772 0.1212 -2.2844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411308503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:22 Heat of formation + Delta-G solvation = -193.760906 kcal Electronic energy + Delta-G solvation = -22001.404367 eV Core-core repulsion = 18198.608749 eV Total energy + Delta-G solvation = -3802.795618 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.26777 -47.80174 -47.71340 -39.60074 -36.65188 -33.49098 -32.05097 -29.26236 -29.04279 -27.32257 -25.19801 -23.22640 -22.10490 -20.90622 -19.04597 -18.89439 -18.45491 -18.13383 -16.32318 -15.99317 -15.40364 -15.13956 -14.59881 -14.50487 -14.44976 -14.20499 -13.92986 -13.88220 -13.82775 -13.59557 -13.27568 -12.90799 -12.34279 -12.01496 -11.80151 -11.55407 -11.31851 -11.14078 -10.95806 -10.76575 -10.65517 -10.45516 -10.36102 -9.97601 -9.19016 -9.05664 -8.28360 -7.68469 -5.91171 -3.89482 2.49596 3.38997 3.45229 3.51598 3.51863 3.55150 3.75509 4.17357 4.50483 4.55891 4.64718 4.66152 5.19945 5.42605 5.46101 5.53795 5.64791 5.72543 5.81142 5.82976 5.92636 6.15754 6.36450 6.58403 6.61694 6.86177 7.27236 7.39600 7.47407 7.73872 7.87898 8.09654 8.53669 9.17604 9.73171 11.20611 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.029981 B = 0.005565 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.712559 B = 5029.959222 C = 5425.438339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 H 0.076 0.924 4 C 0.028 3.972 5 C -0.494 4.494 6 H 0.063 0.937 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.473 5.473 14 C 0.045 3.955 15 C -0.154 4.154 16 C 0.093 3.907 17 O -0.507 6.507 18 C 0.427 3.573 19 F -0.178 7.178 20 F -0.176 7.176 21 F -0.186 7.186 22 C 0.040 3.960 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.020 0.980 27 H 0.021 0.979 28 H 0.257 0.743 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.379 0.621 34 H 0.097 0.903 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -0.245 -14.984 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.034 4.034 3 H 0.094 0.906 4 C -0.009 4.009 5 C -0.532 4.532 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.197 5.197 14 C -0.083 4.083 15 C -0.192 4.192 16 C 0.048 3.952 17 O -0.312 6.312 18 C 0.372 3.628 19 F -0.159 7.159 20 F -0.158 7.158 21 F -0.167 7.167 22 C -0.088 4.088 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.228 0.772 34 H 0.115 0.885 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.857 0.230 -14.440 15.987 hybrid contribution -0.170 -0.601 -0.533 0.821 sum -7.027 -0.371 -14.973 16.544 Atomic orbital electron populations 1.22583 0.99601 1.01200 1.01482 1.22121 0.90201 0.99145 0.91930 0.90579 1.19230 0.96596 0.95392 0.89664 1.21194 0.91424 1.32348 1.08251 0.91892 1.24999 0.98123 0.95800 0.95881 1.69965 1.35227 1.36004 1.13287 0.86628 0.86311 0.77153 0.78127 1.20970 1.21591 1.19772 1.65113 1.53316 1.01065 1.00165 1.22805 1.01156 0.91658 0.92675 1.23217 1.02881 0.95802 0.97321 1.23302 0.81721 1.00786 0.89360 1.86797 1.25569 1.55776 1.63081 1.21591 0.82853 0.73853 0.84462 1.93172 1.41150 1.96138 1.85489 1.93198 1.94222 1.47642 1.80712 1.93162 1.96015 1.55257 1.72278 1.23394 0.99881 0.95945 0.89620 0.92713 0.91931 0.93686 0.96202 0.96093 0.93298 0.92704 0.88725 0.90300 0.89153 0.77236 0.88500 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.35 37.15 0.31 -2.78 16 2 C 0.07 1.46 2.48 -67.71 -0.17 1.29 16 3 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 4 C 0.03 0.69 4.24 -27.88 -0.12 0.58 16 5 C -0.49 -13.62 8.79 -34.44 -0.30 -13.92 16 6 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.47 -8.80 5.01 -222.50 -1.12 -9.91 16 14 C 0.04 0.76 5.07 -2.75 -0.01 0.75 16 15 C -0.15 -2.01 6.01 -25.38 -0.15 -2.17 16 16 C 0.09 1.24 0.83 -88.76 -0.07 1.17 16 17 O -0.51 -6.88 13.06 -35.23 -0.46 -7.34 16 18 C 0.43 5.30 2.42 37.16 0.09 5.39 16 19 F -0.18 -2.26 15.78 2.25 0.04 -2.22 16 20 F -0.18 -2.32 17.14 2.25 0.04 -2.28 16 21 F -0.19 -2.14 16.86 2.25 0.04 -2.11 16 22 C 0.04 0.61 5.37 -1.90 -0.01 0.60 16 23 H 0.05 0.87 5.95 -51.93 -0.31 0.56 16 24 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 25 H 0.04 0.64 6.39 -51.93 -0.33 0.31 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.54 6.76 -51.93 -0.35 0.19 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.05 0.92 5.28 -51.93 -0.27 0.65 16 30 H 0.09 1.83 8.13 -51.93 -0.42 1.41 16 31 H 0.08 0.92 7.35 -51.93 -0.38 0.54 16 32 H 0.09 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.38 3.48 8.84 45.56 0.40 3.88 16 34 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.07 1.00 4.82 -51.93 -0.25 0.75 16 LS Contribution 291.24 15.07 4.39 4.39 Total: -1.00 -30.35 291.24 -5.46 -35.81 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.57 Total: 0.58 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.54 Total: -7.73 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.38 Total: -36.02 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.46 Total: -7.34 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.11 Total: -6.60 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.35 -5.46 -35.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411308503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.949 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds