Wall clock time and date at job start Mon Mar 30 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47037 * 2 1 4 4 C 1.53005 * 109.47193 * 119.99345 * 2 1 3 5 5 C 1.50703 * 109.47398 * 183.11703 * 4 2 1 6 6 H 1.08000 * 119.99728 * 1.71938 * 5 4 2 7 7 C 1.37867 * 120.00026 * 181.71453 * 5 4 2 8 8 N 1.31514 * 120.00115 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00041 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47211 * 90.00078 * 9 7 5 11 11 H 1.48501 * 109.47507 * 210.00344 * 9 7 5 12 12 H 1.48504 * 109.47287 * 330.00372 * 9 7 5 13 13 N 1.46901 * 109.47548 * 239.99693 * 2 1 3 14 14 C 1.47899 * 110.99859 * 296.87425 * 13 2 1 15 15 C 1.53998 * 107.05422 * 145.84341 * 14 13 2 16 16 C 1.54588 * 105.14142 * 358.77423 * 15 14 13 17 17 O 1.42898 * 110.72319 * 96.57897 * 16 15 14 18 18 C 1.53005 * 110.72347 * 219.68574 * 16 15 14 19 19 F 1.39893 * 109.47083 * 58.54551 * 18 16 15 20 20 F 1.39901 * 109.46896 * 178.54687 * 18 16 15 21 21 F 1.39895 * 109.46883 * 298.54711 * 18 16 15 22 22 C 1.48531 * 110.99754 * 54.26949 * 13 2 1 23 23 H 1.09004 * 109.46908 * 172.53949 * 1 2 3 24 24 H 1.08995 * 109.47419 * 292.53599 * 1 2 3 25 25 H 1.09002 * 109.47280 * 52.54526 * 1 2 3 26 26 H 1.08997 * 109.47060 * 303.12244 * 4 2 1 27 27 H 1.09000 * 109.46531 * 63.12195 * 4 2 1 28 28 H 0.97004 * 119.99642 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.91796 * 26.48942 * 14 13 2 30 30 H 1.09004 * 109.91538 * 265.19417 * 14 13 2 31 31 H 1.09000 * 110.30635 * 239.85435 * 15 14 13 32 32 H 1.08997 * 110.30689 * 117.69493 * 15 14 13 33 33 H 0.96703 * 113.99833 * 63.85674 * 17 16 15 34 34 H 1.09004 * 110.66762 * 81.85034 * 22 13 2 35 35 H 1.08999 * 110.66866 * 318.71824 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5450 -0.6546 1.2886 6 1 4.0824 -0.1248 0.5161 7 6 4.2358 -1.2700 2.3108 8 7 3.5814 -1.9155 3.2514 9 14 6.1013 -1.1869 2.3599 10 1 6.5234 0.0109 3.1296 11 1 6.6343 -2.4088 3.0142 12 1 6.6294 -1.0966 0.9749 13 7 2.0197 -0.6925 -1.1994 14 6 1.6079 -2.1131 -1.1964 15 6 1.3523 -2.5123 -2.6616 16 6 1.6132 -1.2279 -3.4815 17 8 2.9416 -1.2253 -4.0081 18 6 0.5864 -1.0861 -4.6069 19 9 -0.7014 -1.0526 -4.0617 20 9 0.8262 0.0994 -5.3101 21 9 0.6959 -2.1753 -5.4779 22 6 1.4337 -0.1036 -2.4306 23 1 -0.3633 -1.0190 -0.1334 24 1 -0.3634 0.3938 0.9491 25 1 -0.3634 0.6250 -0.8158 26 1 1.6316 -0.2405 2.1384 27 1 1.7230 -1.7637 1.2218 28 1 4.0675 -2.3487 3.9704 29 1 0.6946 -2.2337 -0.6139 30 1 2.4032 -2.7293 -0.7770 31 1 0.3207 -2.8400 -2.7899 32 1 2.0410 -3.3009 -2.9645 33 1 3.1151 -1.9354 -4.6412 34 1 1.9810 0.7911 -2.7273 35 1 0.3772 0.1212 -2.2844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411308503.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:21 Heat of formation + Delta-G solvation = -216.092184 kcal Electronic energy + Delta-G solvation = -22002.372724 eV Core-core repulsion = 18198.608749 eV Total energy + Delta-G solvation = -3803.763975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -51.23771 -48.75030 -48.69827 -40.86225 -37.90773 -35.22321 -33.77123 -30.54763 -30.40646 -29.04010 -26.41293 -24.98430 -23.60609 -22.01073 -20.44474 -19.94286 -19.44338 -19.20499 -18.36337 -17.32794 -16.71891 -16.45295 -16.24186 -15.57756 -15.53935 -15.18543 -15.17040 -14.93947 -14.86062 -14.74839 -14.69153 -14.23159 -13.81937 -13.72548 -13.31107 -13.15735 -12.79227 -12.59396 -12.53712 -12.35845 -12.20030 -11.96217 -11.84589 -11.36614 -11.14036 -11.00764 -10.47504 -9.08731 -8.10017 -6.14614 1.42525 1.43154 1.47860 1.55158 2.48048 2.50553 2.55230 2.74119 3.15215 3.19862 3.30801 3.50243 3.56589 4.05437 4.21680 4.28694 4.36018 4.45853 4.54709 4.60254 4.65872 4.89250 4.96911 5.14030 5.16219 5.28461 5.45981 5.70914 5.89496 6.10359 6.23366 6.45243 6.49310 6.99424 7.51714 9.01676 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.029981 B = 0.005565 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.712559 B = 5029.959222 C = 5425.438339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.082 3.918 3 H 0.068 0.932 4 C 0.035 3.965 5 C -0.502 4.502 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.499 5.499 14 C 0.044 3.956 15 C -0.144 4.144 16 C 0.099 3.901 17 O -0.524 6.524 18 C 0.438 3.562 19 F -0.177 7.177 20 F -0.180 7.180 21 F -0.177 7.177 22 C 0.039 3.961 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.071 0.929 26 H -0.005 1.005 27 H 0.003 0.997 28 H 0.259 0.741 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.398 0.602 34 H 0.093 0.907 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -0.236 -16.717 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.086 0.914 4 C -0.002 4.002 5 C -0.540 4.540 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.580 5.580 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.223 5.223 14 C -0.083 4.083 15 C -0.182 4.182 16 C 0.054 3.946 17 O -0.332 6.332 18 C 0.383 3.617 19 F -0.159 7.159 20 F -0.161 7.161 21 F -0.159 7.159 22 C -0.089 4.089 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.013 0.987 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.250 0.750 34 H 0.111 0.889 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.087 0.236 -16.196 17.680 hybrid contribution -0.089 -0.602 -0.010 0.609 sum -7.176 -0.366 -16.206 17.728 Atomic orbital electron populations 1.22455 0.96741 1.02119 1.02567 1.21807 0.92460 0.97853 0.90542 0.91410 1.19072 0.95174 0.94636 0.91354 1.21484 0.93093 1.31678 1.07755 0.92622 1.25788 1.02656 0.95638 0.95673 1.70080 1.36933 1.37019 1.13978 0.85626 0.80955 0.77337 0.78176 1.20241 1.21146 1.19406 1.64927 1.54650 1.01929 1.00785 1.22700 0.99749 0.90508 0.95386 1.23161 1.04624 0.96116 0.94297 1.23095 0.82171 0.99881 0.89427 1.86757 1.25597 1.57041 1.63844 1.21259 0.82412 0.73914 0.84102 1.93180 1.41042 1.96140 1.85502 1.93198 1.94244 1.47943 1.80729 1.93185 1.95965 1.54799 1.71925 1.23402 1.00422 0.96384 0.88680 0.92252 0.92014 0.91013 0.98720 0.97890 0.93243 0.92837 0.92060 0.88243 0.87504 0.75043 0.88897 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.64 8.35 71.98 0.60 -5.04 16 2 C 0.08 3.23 2.48 44.91 0.11 3.34 16 3 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 4 C 0.03 1.76 4.24 29.85 0.13 1.89 16 5 C -0.50 -28.25 8.79 25.60 0.22 -28.03 16 6 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 8 N -0.94 -56.81 13.29 21.44 0.28 -56.52 16 9 Si 0.95 45.43 29.54 68.60 2.03 47.45 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 13 N -0.50 -18.31 5.01 -857.86 -4.30 -22.61 16 14 C 0.04 1.49 5.07 86.45 0.44 1.93 16 15 C -0.14 -3.44 6.01 31.47 0.19 -3.25 16 16 C 0.10 2.41 0.83 -9.59 -0.01 2.40 16 17 O -0.52 -13.07 13.06 -148.98 -1.95 -15.02 16 18 C 0.44 9.56 2.42 71.98 0.17 9.74 16 19 F -0.18 -3.92 15.78 44.97 0.71 -3.21 16 20 F -0.18 -4.25 17.14 44.97 0.77 -3.48 16 21 F -0.18 -3.52 16.86 44.97 0.76 -2.76 16 22 C 0.04 1.12 5.37 86.65 0.47 1.59 16 23 H 0.06 1.80 5.95 -2.39 -0.01 1.78 16 24 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 25 H 0.07 1.86 6.39 -2.39 -0.02 1.85 16 26 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 27 H 0.00 0.15 6.76 -2.39 -0.02 0.13 16 28 H 0.26 14.89 8.31 -92.71 -0.77 14.11 16 29 H 0.05 1.78 5.28 -2.39 -0.01 1.77 16 30 H 0.06 2.43 8.13 -2.38 -0.02 2.41 16 31 H 0.10 2.00 7.35 -2.39 -0.02 1.98 16 32 H 0.11 2.21 8.08 -2.39 -0.02 2.19 16 33 H 0.40 6.25 8.84 -74.06 -0.65 5.60 16 34 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 35 H 0.08 2.18 4.82 -2.39 -0.01 2.16 16 Total: -1.00 -65.20 291.24 1.56 -63.64 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.47 Total: 7.56 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 2.78 Total: -15.05 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -4.02 Total: -79.14 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.95 Total: -15.02 kcal Atomic # 9 Polarization: -11.68 SS G_CDS: 2.24 Total: -9.44 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -65.20 1.56 -63.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411308503.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.454 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds