Wall clock time and date at job start Mon Mar 30 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.53602 * 2 1 4 4 C 1.53097 * 109.50408 * 239.89452 * 2 1 3 5 5 O 1.43017 * 109.26075 * 296.90901 * 4 2 1 6 6 C 1.43016 * 113.73559 * 301.33327 * 5 4 2 7 7 H 1.08995 * 109.50762 * 298.73591 * 6 5 4 8 8 C 1.53005 * 109.50337 * 178.60232 * 6 5 4 9 9 F 1.39896 * 109.47113 * 300.21818 * 8 6 5 10 10 F 1.39899 * 109.47027 * 60.21800 * 8 6 5 11 11 F 1.39896 * 109.46812 * 180.21873 * 8 6 5 12 12 C 1.53102 * 109.25912 * 58.67224 * 6 5 4 13 13 N 1.47010 * 109.50697 * 120.10762 * 2 1 3 14 14 C 1.46896 * 111.00170 * 297.54655 * 13 2 1 15 15 C 1.53002 * 109.46836 * 189.67853 * 14 13 2 16 16 C 1.50706 * 109.47153 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 H 1.08993 * 109.47343 * 299.88631 * 1 2 3 25 25 H 1.09001 * 109.47405 * 59.89006 * 1 2 3 26 26 H 1.09005 * 109.46919 * 179.89031 * 1 2 3 27 27 H 1.09009 * 109.50376 * 176.97430 * 4 2 1 28 28 H 1.08995 * 109.51279 * 56.85031 * 4 2 1 29 29 H 1.08994 * 109.50446 * 183.21272 * 12 6 5 30 30 H 1.08996 * 109.54098 * 63.10008 * 12 6 5 31 31 H 1.08999 * 109.47051 * 69.68543 * 14 13 2 32 32 H 1.08993 * 109.47142 * 309.68044 * 14 13 2 33 33 H 1.09004 * 109.47178 * 60.00344 * 15 14 13 34 34 H 1.08993 * 109.47411 * 300.00026 * 15 14 13 35 35 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2484 5 8 1.6227 -2.0908 -1.2058 6 6 2.0839 -2.7982 -0.0515 7 1 3.1737 -2.8118 -0.0443 8 6 1.5542 -4.2332 -0.0865 9 9 0.1554 -4.2139 -0.0982 10 9 2.0214 -4.8748 -1.2386 11 9 2.0016 -4.9231 1.0454 12 6 1.5730 -2.0954 1.2091 13 7 2.0209 -0.6951 1.1988 14 6 1.5989 0.0016 2.4212 15 6 2.3206 -0.6026 3.6275 16 6 1.8881 0.1125 4.8816 17 1 1.1701 0.9171 4.8240 18 6 2.4091 -0.2604 6.1024 19 7 3.2795 -1.2438 6.1731 20 14 1.8726 0.6255 7.6569 21 1 2.5685 0.0352 8.8284 22 1 2.2180 2.0659 7.5500 23 1 0.4047 0.4798 7.8280 24 1 -0.3633 0.5120 0.8909 25 1 -0.3634 0.5155 -0.8890 26 1 -0.3633 -1.0277 -0.0020 27 1 3.1299 -0.6772 -1.2761 28 1 1.6332 -0.2460 -2.1390 29 1 1.9690 -2.5977 2.0916 30 1 0.4837 -2.1289 1.2291 31 1 0.5221 -0.1091 2.5492 32 1 1.8484 1.0595 2.3410 33 1 3.3974 -0.4920 3.4996 34 1 2.0710 -1.6606 3.7077 35 1 3.5580 -1.7041 5.3660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586777655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:41 Heat of formation + Delta-G solvation = -202.495807 kcal Electronic energy + Delta-G solvation = -21789.267872 eV Core-core repulsion = 17986.093480 eV Total energy + Delta-G solvation = -3803.174392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.11808 -47.63816 -47.58886 -40.10052 -36.34767 -33.61931 -32.65082 -30.49127 -28.12175 -26.51235 -25.64000 -23.71089 -22.64309 -21.00967 -19.50379 -18.55771 -18.19119 -17.93963 -16.97111 -16.20226 -16.15494 -15.22872 -14.80186 -14.43786 -14.30220 -14.07531 -14.01116 -13.94841 -13.74604 -13.73088 -13.69875 -13.13010 -12.85573 -12.34078 -12.03045 -11.73283 -11.58863 -11.51378 -11.20586 -10.86185 -10.67531 -10.21395 -10.08677 -9.98374 -9.64414 -8.62833 -8.35294 -8.08665 -6.39603 -4.09371 2.43336 3.24025 3.41936 3.43679 3.62076 3.62819 3.93828 4.20666 4.44243 4.53731 4.69078 4.77221 4.92879 5.02234 5.17578 5.37621 5.42668 5.46487 5.64161 5.68883 5.78919 5.86981 6.10256 6.13911 6.29082 6.67073 6.70260 7.04885 7.14929 7.45873 7.54575 8.16559 8.41643 8.84342 9.63019 11.01426 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.005477 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.846992 B = 5111.302937 C = 5867.251184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.037 3.963 3 H 0.096 0.904 4 C 0.074 3.926 5 O -0.368 6.368 6 C 0.052 3.948 7 H 0.110 0.890 8 C 0.467 3.533 9 F -0.176 7.176 10 F -0.178 7.178 11 F -0.171 7.171 12 C 0.019 3.981 13 N -0.527 5.527 14 C 0.070 3.930 15 C 0.014 3.986 16 C -0.605 4.605 17 H 0.048 0.952 18 C 0.017 3.983 19 N -0.910 5.910 20 Si 1.069 2.931 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.017 0.983 34 H 0.008 0.992 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 -1.692 -15.468 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.072 4.072 3 H 0.114 0.886 4 C -0.003 4.003 5 O -0.287 6.287 6 C -0.008 4.008 7 H 0.128 0.872 8 C 0.412 3.588 9 F -0.158 7.158 10 F -0.159 7.159 11 F -0.152 7.152 12 C -0.110 4.110 13 N -0.251 5.251 14 C -0.056 4.056 15 C -0.024 4.024 16 C -0.644 4.644 17 H 0.066 0.934 18 C -0.187 4.187 19 N -0.546 5.546 20 Si 0.897 3.103 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.215 1.215 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.026 0.974 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.748 -1.751 -13.977 14.351 hybrid contribution -1.087 -0.107 -1.482 1.841 sum -3.835 -1.858 -15.459 16.035 Atomic orbital electron populations 1.22376 0.96764 1.02735 1.02292 1.22453 0.94082 0.99297 0.91400 0.88589 1.22813 0.99735 0.79937 0.97781 1.87932 1.76022 1.24248 1.40465 1.23190 1.01019 0.87360 0.89252 0.87232 1.20115 0.76035 0.88994 0.73688 1.93190 1.29589 1.96897 1.96086 1.93190 1.88362 1.84003 1.50393 1.93233 1.89105 1.81291 1.51589 1.22737 0.99785 0.91714 0.96750 1.62549 1.58884 1.00595 1.03098 1.22248 0.97651 0.97646 0.88027 1.19247 0.95888 0.95697 0.91529 1.21964 1.28703 1.20753 0.92980 0.93411 1.25827 0.94504 0.96584 1.01807 1.70779 1.30172 1.21029 1.32613 0.83546 0.75846 0.75410 0.75506 1.20711 1.21428 1.21489 0.91944 0.92203 0.91921 0.91660 0.87729 0.87652 0.92532 0.95205 0.91367 0.96511 0.97433 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.39 37.16 0.31 -2.05 16 2 C 0.04 0.49 2.97 -67.60 -0.20 0.29 16 3 H 0.10 1.19 8.09 -51.93 -0.42 0.77 16 4 C 0.07 0.84 6.41 37.21 0.24 1.08 16 5 O -0.37 -4.96 9.81 -35.23 -0.35 -5.30 16 6 C 0.05 0.72 2.78 -26.68 -0.07 0.65 16 7 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 8 C 0.47 6.51 2.85 37.16 0.11 6.62 16 9 F -0.18 -2.60 16.69 2.25 0.04 -2.56 16 10 F -0.18 -2.44 17.26 2.25 0.04 -2.40 16 11 F -0.17 -2.49 16.86 2.25 0.04 -2.45 16 12 C 0.02 0.30 4.07 -3.71 -0.02 0.29 16 13 N -0.53 -8.80 4.68 -226.34 -1.06 -9.86 16 14 C 0.07 1.41 4.27 -3.83 -0.02 1.39 16 15 C 0.01 0.34 4.21 -27.88 -0.12 0.22 16 16 C -0.61 -16.95 9.11 -34.44 -0.31 -17.26 16 17 H 0.05 1.31 7.74 -52.49 -0.41 0.90 16 18 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 19 N -0.91 -27.68 13.65 55.43 0.76 -26.93 16 20 Si 1.07 25.06 29.90 -169.99 -5.08 19.97 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.06 0.87 6.69 -51.93 -0.35 0.52 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.88 6.07 -51.93 -0.32 0.57 16 27 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.11 1.88 6.13 -51.93 -0.32 1.56 16 30 H 0.06 0.93 5.97 -51.93 -0.31 0.62 16 31 H 0.03 0.60 6.88 -51.93 -0.36 0.24 16 32 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 33 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 34 H 0.01 0.20 6.37 -51.93 -0.33 -0.14 16 35 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 LS Contribution 290.49 15.07 4.38 4.38 Total: -1.00 -30.12 290.49 -5.84 -35.96 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.42 Total: -2.43 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.18 Total: -8.39 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.30 Total: -36.78 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.35 Total: -5.30 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.11 Total: -7.41 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.97 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.12 -5.84 -35.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586777655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.537 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds