Wall clock time and date at job start Mon Mar 30 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.53602 * 2 1 4 4 C 1.53097 * 109.50408 * 239.89452 * 2 1 3 5 5 O 1.43017 * 109.26075 * 296.90901 * 4 2 1 6 6 C 1.43016 * 113.73559 * 301.33327 * 5 4 2 7 7 H 1.08995 * 109.50762 * 298.73591 * 6 5 4 8 8 C 1.53005 * 109.50337 * 178.60232 * 6 5 4 9 9 F 1.39896 * 109.47113 * 300.21818 * 8 6 5 10 10 F 1.39899 * 109.47027 * 60.21800 * 8 6 5 11 11 F 1.39896 * 109.46812 * 180.21873 * 8 6 5 12 12 C 1.53102 * 109.25912 * 58.67224 * 6 5 4 13 13 N 1.47010 * 109.50697 * 120.10762 * 2 1 3 14 14 C 1.46896 * 111.00170 * 297.54655 * 13 2 1 15 15 C 1.53002 * 109.46836 * 189.67853 * 14 13 2 16 16 C 1.50706 * 109.47153 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00434 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99826 * 359.72891 * 18 16 15 20 20 Si 1.86800 * 120.00406 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47364 * 179.72558 * 20 18 16 22 22 H 1.48508 * 109.46883 * 299.72681 * 20 18 16 23 23 H 1.48497 * 109.46870 * 59.72491 * 20 18 16 24 24 H 1.08993 * 109.47343 * 299.88631 * 1 2 3 25 25 H 1.09001 * 109.47405 * 59.89006 * 1 2 3 26 26 H 1.09005 * 109.46919 * 179.89031 * 1 2 3 27 27 H 1.09009 * 109.50376 * 176.97430 * 4 2 1 28 28 H 1.08995 * 109.51279 * 56.85031 * 4 2 1 29 29 H 1.08994 * 109.50446 * 183.21272 * 12 6 5 30 30 H 1.08996 * 109.54098 * 63.10008 * 12 6 5 31 31 H 1.08999 * 109.47051 * 69.68543 * 14 13 2 32 32 H 1.08993 * 109.47142 * 309.68044 * 14 13 2 33 33 H 1.09004 * 109.47178 * 60.00344 * 15 14 13 34 34 H 1.08993 * 109.47411 * 300.00026 * 15 14 13 35 35 H 0.97000 * 120.00236 * 0.27947 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2484 5 8 1.6227 -2.0908 -1.2058 6 6 2.0839 -2.7982 -0.0515 7 1 3.1737 -2.8118 -0.0443 8 6 1.5542 -4.2332 -0.0865 9 9 0.1554 -4.2139 -0.0982 10 9 2.0214 -4.8748 -1.2386 11 9 2.0016 -4.9231 1.0454 12 6 1.5730 -2.0954 1.2091 13 7 2.0209 -0.6951 1.1988 14 6 1.5989 0.0016 2.4212 15 6 2.3206 -0.6026 3.6275 16 6 1.8881 0.1125 4.8816 17 1 1.1701 0.9171 4.8240 18 6 2.4091 -0.2604 6.1024 19 7 3.2795 -1.2438 6.1731 20 14 1.8726 0.6255 7.6569 21 1 2.5685 0.0352 8.8284 22 1 2.2180 2.0659 7.5500 23 1 0.4047 0.4798 7.8280 24 1 -0.3633 0.5120 0.8909 25 1 -0.3634 0.5155 -0.8890 26 1 -0.3633 -1.0277 -0.0020 27 1 3.1299 -0.6772 -1.2761 28 1 1.6332 -0.2460 -2.1390 29 1 1.9690 -2.5977 2.0916 30 1 0.4837 -2.1289 1.2291 31 1 0.5221 -0.1091 2.5492 32 1 1.8484 1.0595 2.3410 33 1 3.3974 -0.4920 3.4996 34 1 2.0710 -1.6606 3.7077 35 1 3.5580 -1.7041 5.3660 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586777655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:39 Heat of formation + Delta-G solvation = -222.555036 kcal Electronic energy + Delta-G solvation = -21790.137705 eV Core-core repulsion = 17986.093480 eV Total energy + Delta-G solvation = -3804.044225 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.26597 -48.79127 -48.73389 -41.26105 -37.67611 -35.55682 -33.87500 -32.11613 -29.56540 -27.67093 -26.94725 -25.58186 -23.83242 -22.71866 -20.68654 -19.70039 -19.36266 -19.13962 -18.92320 -17.46607 -17.28690 -16.41084 -16.15469 -15.66425 -15.60941 -15.54710 -15.46679 -15.17815 -15.08580 -14.89256 -14.87997 -14.55011 -14.20612 -14.09246 -13.53963 -13.13693 -12.89481 -12.73036 -12.59531 -12.46156 -12.05283 -11.93997 -11.73552 -11.56807 -10.94040 -10.69219 -10.53119 -9.44665 -8.69134 -6.39884 1.31971 1.52910 1.61128 1.80338 2.14020 2.41186 2.57616 2.79232 3.01788 3.16172 3.33463 3.51348 3.71276 3.81987 3.91984 4.10573 4.26843 4.38717 4.42015 4.47519 4.62142 4.65761 4.79097 4.82855 4.90960 5.18452 5.23426 5.37346 5.66740 5.75587 5.98983 6.05547 6.18164 6.57150 7.42311 8.72168 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.005477 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.846992 B = 5111.302937 C = 5867.251184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.033 3.967 3 H 0.111 0.889 4 C 0.073 3.927 5 O -0.372 6.372 6 C 0.062 3.938 7 H 0.122 0.878 8 C 0.469 3.531 9 F -0.181 7.181 10 F -0.173 7.173 11 F -0.177 7.177 12 C 0.022 3.978 13 N -0.533 5.533 14 C 0.089 3.911 15 C 0.018 3.982 16 C -0.620 4.620 17 H 0.052 0.948 18 C -0.037 4.037 19 N -0.937 5.937 20 Si 1.117 2.883 21 H -0.285 1.285 22 H -0.267 1.267 23 H -0.270 1.270 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.026 0.974 32 H 0.073 0.927 33 H -0.007 1.007 34 H -0.011 1.011 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -0.423 -16.734 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.075 4.075 3 H 0.129 0.871 4 C -0.003 4.003 5 O -0.291 6.291 6 C 0.001 3.999 7 H 0.139 0.861 8 C 0.414 3.586 9 F -0.162 7.162 10 F -0.155 7.155 11 F -0.158 7.158 12 C -0.107 4.107 13 N -0.258 5.258 14 C -0.038 4.038 15 C -0.019 4.019 16 C -0.659 4.659 17 H 0.070 0.930 18 C -0.235 4.235 19 N -0.574 5.574 20 Si 0.938 3.062 21 H -0.210 1.210 22 H -0.192 1.192 23 H -0.195 1.195 24 H 0.066 0.934 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.158 0.842 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.012 0.988 34 H 0.008 0.992 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.358 -0.478 -15.286 15.658 hybrid contribution -0.900 -0.503 -1.164 1.556 sum -4.258 -0.981 -16.451 17.021 Atomic orbital electron populations 1.22322 0.96333 1.01966 1.02985 1.22664 0.94484 0.99980 0.90406 0.87145 1.23065 1.00625 0.78682 0.97881 1.87946 1.76205 1.25288 1.39630 1.23040 1.01466 0.86993 0.88357 0.86078 1.20108 0.75771 0.89089 0.73584 1.93179 1.30036 1.96921 1.96105 1.93197 1.88277 1.83926 1.50077 1.93224 1.89142 1.81466 1.52004 1.22618 0.99335 0.91603 0.97149 1.62430 1.59351 1.00823 1.03167 1.21849 0.96517 0.97617 0.87850 1.19120 0.94852 0.94759 0.93205 1.22423 1.28385 1.20769 0.94281 0.92993 1.27405 0.93869 0.96514 1.05691 1.70913 1.31984 1.22541 1.31933 0.82939 0.76420 0.75293 0.71541 1.21007 1.19188 1.19549 0.93379 0.89364 0.93375 0.90667 0.84238 0.90247 0.93121 0.95615 0.90892 0.98845 0.99239 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.19 8.39 71.98 0.60 -3.58 16 2 C 0.03 0.79 2.97 44.93 0.13 0.92 16 3 H 0.11 2.39 8.09 -2.39 -0.02 2.37 16 4 C 0.07 1.42 6.41 72.01 0.46 1.88 16 5 O -0.37 -9.11 9.81 -148.98 -1.46 -10.57 16 6 C 0.06 1.65 2.78 30.63 0.09 1.73 16 7 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 8 C 0.47 12.80 2.85 71.98 0.21 13.00 16 9 F -0.18 -5.23 16.69 44.97 0.75 -4.48 16 10 F -0.17 -4.52 17.26 44.97 0.78 -3.74 16 11 F -0.18 -5.18 16.86 44.97 0.76 -4.42 16 12 C 0.02 0.70 4.07 86.31 0.35 1.05 16 13 N -0.53 -17.47 4.68 -870.02 -4.07 -21.54 16 14 C 0.09 3.55 4.27 86.30 0.37 3.92 16 15 C 0.02 0.92 4.21 29.85 0.13 1.05 16 16 C -0.62 -35.09 9.11 25.60 0.23 -34.86 16 17 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 18 C -0.04 -2.15 5.46 84.65 0.46 -1.68 16 19 N -0.94 -58.27 13.65 21.45 0.29 -57.98 16 20 Si 1.12 49.93 29.90 68.60 2.05 51.98 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 H 0.05 1.26 6.69 -2.39 -0.02 1.25 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.28 6.07 -2.38 -0.01 1.26 16 27 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 2.97 6.13 -2.39 -0.01 2.96 16 30 H 0.05 1.69 5.97 -2.39 -0.01 1.68 16 31 H 0.03 1.04 6.88 -2.39 -0.02 1.03 16 32 H 0.07 2.83 8.04 -2.39 -0.02 2.81 16 33 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16 34 H -0.01 -0.58 6.37 -2.39 -0.02 -0.59 16 35 H 0.26 16.13 7.22 -92.71 -0.67 15.46 16 Total: -1.00 -65.22 290.49 3.33 -61.89 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 1.20 Total: 5.43 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 3.03 Total: -16.56 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -3.78 Total: -79.52 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.46 Total: -10.57 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 2.29 Total: -12.65 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 2.05 Total: 51.98 kcal Total: -65.22 3.33 -61.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586777655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.662 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds