Wall clock time and date at job start Mon Mar 30 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.54380 * 2 1 4 4 C 1.53096 * 109.50447 * 239.89142 * 2 1 3 5 5 O 1.43023 * 109.25861 * 183.21721 * 4 2 1 6 6 C 1.43005 * 113.73627 * 58.67069 * 5 4 2 7 7 H 1.08999 * 109.54415 * 61.28747 * 6 5 4 8 8 C 1.53003 * 109.50683 * 181.39908 * 6 5 4 9 9 F 1.39899 * 109.47106 * 179.78467 * 8 6 5 10 10 F 1.39907 * 109.46578 * 299.78308 * 8 6 5 11 11 F 1.39895 * 109.47112 * 59.77794 * 8 6 5 12 12 C 1.53101 * 109.26043 * 301.33198 * 6 5 4 13 13 N 1.47005 * 109.50729 * 120.11164 * 2 1 3 14 14 C 1.46902 * 111.00075 * 302.32456 * 13 2 1 15 15 C 1.53000 * 109.47361 * 189.99735 * 14 13 2 16 16 C 1.50697 * 109.47131 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00302 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99948 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99670 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00064 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47056 * 89.99973 * 20 18 16 22 22 H 1.48499 * 109.47290 * 209.99636 * 20 18 16 23 23 H 1.48495 * 109.47451 * 329.99876 * 20 18 16 24 24 H 1.09000 * 109.47050 * 180.10864 * 1 2 3 25 25 H 1.08993 * 109.46793 * 300.11124 * 1 2 3 26 26 H 1.08998 * 109.47040 * 60.10784 * 1 2 3 27 27 H 1.08999 * 109.51205 * 303.15477 * 4 2 1 28 28 H 1.09004 * 109.50767 * 63.28232 * 4 2 1 29 29 H 1.09005 * 109.50693 * 296.91053 * 12 6 5 30 30 H 1.08996 * 109.50882 * 176.78807 * 12 6 5 31 31 H 1.09000 * 109.47188 * 310.00467 * 14 13 2 32 32 H 1.09006 * 109.46803 * 69.99741 * 14 13 2 33 33 H 1.09000 * 109.47567 * 300.00500 * 15 14 13 34 34 H 1.08999 * 109.46532 * 60.00416 * 15 14 13 35 35 H 0.97005 * 119.99627 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2484 5 8 3.4694 -0.7868 -1.2057 6 6 3.9818 -1.4579 -0.0515 7 1 3.6308 -2.4898 -0.0439 8 6 5.5113 -1.4387 -0.0864 9 9 6.0118 -2.0911 1.0454 10 9 5.9597 -2.0936 -1.2386 11 9 5.9610 -0.1140 -0.0982 12 6 3.4903 -0.7414 1.2090 13 7 2.0209 -0.6952 1.1987 14 6 1.5055 -0.0645 2.4212 15 6 2.2255 -0.6479 3.6386 16 6 1.6971 -0.0004 4.8927 17 1 0.9247 0.7517 4.8279 18 6 2.1998 -0.3682 6.1227 19 7 1.7383 0.1966 7.2172 20 14 3.5361 -1.6684 6.2348 21 1 4.8685 -1.0164 6.1627 22 1 3.4109 -2.3974 7.5225 23 1 3.3917 -2.6252 5.1084 24 1 -0.3633 -1.0277 0.0019 25 1 -0.3632 0.5155 0.8889 26 1 -0.3633 0.5121 -0.8909 27 1 1.6331 -1.7343 -1.2761 28 1 1.7273 -0.1795 -2.1390 29 1 3.8863 0.2739 1.2285 30 1 3.8312 -1.2826 2.0916 31 1 1.6797 1.0106 2.3766 32 1 0.4357 -0.2559 2.5055 33 1 2.0512 -1.7230 3.6832 34 1 3.2952 -0.4564 3.5543 35 1 2.0916 -0.0624 8.0827 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586777658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:06 Heat of formation + Delta-G solvation = -195.247186 kcal Electronic energy + Delta-G solvation = -21761.108098 eV Core-core repulsion = 17958.248030 eV Total energy + Delta-G solvation = -3802.860068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.13396 -47.66172 -47.59716 -39.94855 -36.43176 -33.56570 -32.72140 -30.80672 -28.80655 -26.84609 -25.17101 -23.89136 -22.25152 -20.71367 -19.88642 -18.59790 -18.32520 -18.06097 -16.90563 -16.34211 -15.65136 -15.25957 -15.01144 -14.50899 -14.43343 -14.32586 -14.04064 -13.91508 -13.75345 -13.73912 -13.63431 -13.29730 -12.62622 -12.48422 -12.24591 -11.85729 -11.69145 -11.43233 -11.16911 -11.02010 -10.79629 -10.17199 -9.98984 -9.90240 -9.67516 -9.26718 -8.59497 -8.14546 -6.10615 -4.09850 2.41090 3.22046 3.27729 3.35831 3.38760 3.59268 3.91786 4.16138 4.40113 4.42647 4.63820 4.74585 4.90587 5.04298 5.13039 5.23281 5.44959 5.48826 5.62365 5.69819 5.80511 5.96036 6.03966 6.10067 6.22864 6.58589 6.66462 6.94229 7.08083 7.28521 7.41043 7.73351 8.44835 8.92498 9.51117 11.02516 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.006995 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.772936 B = 4001.723970 C = 5246.023708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 H 0.051 0.949 4 C 0.073 3.927 5 O -0.370 6.370 6 C 0.050 3.950 7 H 0.110 0.890 8 C 0.466 3.534 9 F -0.172 7.172 10 F -0.178 7.178 11 F -0.175 7.175 12 C 0.018 3.982 13 N -0.531 5.531 14 C 0.071 3.929 15 C -0.016 4.016 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.070 3.930 19 N -0.901 5.901 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.013 0.987 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -3.476 -17.728 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 H 0.069 0.931 4 C -0.003 4.003 5 O -0.289 6.289 6 C -0.010 4.010 7 H 0.128 0.872 8 C 0.411 3.589 9 F -0.153 7.153 10 F -0.159 7.159 11 F -0.156 7.156 12 C -0.111 4.111 13 N -0.257 5.257 14 C -0.055 4.055 15 C -0.053 4.053 16 C -0.561 4.561 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.539 5.539 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.188 1.188 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.031 0.969 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.018 -3.868 -17.689 18.357 hybrid contribution 1.104 0.139 0.490 1.216 sum 4.122 -3.729 -17.198 18.074 Atomic orbital electron populations 1.21774 0.93086 1.02916 1.02312 1.22369 0.96880 0.96619 0.91208 0.93087 1.22868 0.78584 1.01030 0.97820 1.87943 1.22517 1.77906 1.40544 1.23227 0.87756 1.00673 0.89301 0.87222 1.20118 0.91090 0.74002 0.73661 1.93227 1.89015 1.81430 1.51648 1.93192 1.91085 1.81289 1.50381 1.93198 1.91012 1.35338 1.96068 1.22808 0.90729 1.00850 0.96686 1.62403 1.06125 1.53971 1.03201 1.22217 1.00208 0.95800 0.87299 1.19735 0.95276 0.97280 0.93042 1.21003 1.22699 1.23253 0.89195 0.90998 1.24988 0.96485 0.96075 0.95663 1.69909 1.43116 1.42917 0.97998 0.86821 0.82488 0.82525 0.77793 1.20194 1.21238 1.18767 0.91551 0.91388 0.92240 0.91604 0.87721 0.92612 0.87256 0.95061 0.90337 0.95525 0.96932 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.89 37.16 0.33 -1.27 16 2 C 0.04 0.50 2.55 -67.60 -0.17 0.32 16 3 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 4 C 0.07 0.82 6.29 37.21 0.23 1.05 16 5 O -0.37 -4.97 10.36 -35.23 -0.36 -5.33 16 6 C 0.05 0.68 2.78 -26.68 -0.07 0.61 16 7 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 8 C 0.47 6.40 2.85 37.16 0.11 6.50 16 9 F -0.17 -2.43 16.86 2.25 0.04 -2.39 16 10 F -0.18 -2.39 17.26 2.25 0.04 -2.35 16 11 F -0.17 -2.58 16.69 2.25 0.04 -2.54 16 12 C 0.02 0.28 3.98 -3.71 -0.01 0.27 16 13 N -0.53 -8.50 4.69 -226.34 -1.06 -9.56 16 14 C 0.07 1.35 4.42 -3.82 -0.02 1.33 16 15 C -0.02 -0.36 3.31 -27.88 -0.09 -0.46 16 16 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 17 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 20 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.85 6.61 -51.93 -0.34 0.50 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 30 H 0.11 1.86 5.81 -51.93 -0.30 1.56 16 31 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.08 1.48 6.87 -51.93 -0.36 1.12 16 33 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 34 H 0.01 0.29 5.70 -51.93 -0.30 -0.01 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -29.95 291.40 -5.56 -35.51 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.61 Total: -3.22 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.13 Total: -4.62 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.29 Total: -36.23 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.36 Total: -5.33 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 0.11 Total: -7.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.95 -5.56 -35.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586777658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.734 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds