Wall clock time and date at job start Mon Mar 30 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.54380 * 2 1 4 4 C 1.53096 * 109.50447 * 239.89142 * 2 1 3 5 5 O 1.43023 * 109.25861 * 183.21721 * 4 2 1 6 6 C 1.43005 * 113.73627 * 58.67069 * 5 4 2 7 7 H 1.08999 * 109.54415 * 61.28747 * 6 5 4 8 8 C 1.53003 * 109.50683 * 181.39908 * 6 5 4 9 9 F 1.39899 * 109.47106 * 179.78467 * 8 6 5 10 10 F 1.39907 * 109.46578 * 299.78308 * 8 6 5 11 11 F 1.39895 * 109.47112 * 59.77794 * 8 6 5 12 12 C 1.53101 * 109.26043 * 301.33198 * 6 5 4 13 13 N 1.47005 * 109.50729 * 120.11164 * 2 1 3 14 14 C 1.46902 * 111.00075 * 302.32456 * 13 2 1 15 15 C 1.53000 * 109.47361 * 189.99735 * 14 13 2 16 16 C 1.50697 * 109.47131 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00302 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99948 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99670 * 180.02562 * 18 16 15 20 20 Si 1.86792 * 120.00064 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47056 * 89.99973 * 20 18 16 22 22 H 1.48499 * 109.47290 * 209.99636 * 20 18 16 23 23 H 1.48495 * 109.47451 * 329.99876 * 20 18 16 24 24 H 1.09000 * 109.47050 * 180.10864 * 1 2 3 25 25 H 1.08993 * 109.46793 * 300.11124 * 1 2 3 26 26 H 1.08998 * 109.47040 * 60.10784 * 1 2 3 27 27 H 1.08999 * 109.51205 * 303.15477 * 4 2 1 28 28 H 1.09004 * 109.50767 * 63.28232 * 4 2 1 29 29 H 1.09005 * 109.50693 * 296.91053 * 12 6 5 30 30 H 1.08996 * 109.50882 * 176.78807 * 12 6 5 31 31 H 1.09000 * 109.47188 * 310.00467 * 14 13 2 32 32 H 1.09006 * 109.46803 * 69.99741 * 14 13 2 33 33 H 1.09000 * 109.47567 * 300.00500 * 15 14 13 34 34 H 1.08999 * 109.46532 * 60.00416 * 15 14 13 35 35 H 0.97005 * 119.99627 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2484 5 8 3.4694 -0.7868 -1.2057 6 6 3.9818 -1.4579 -0.0515 7 1 3.6308 -2.4898 -0.0439 8 6 5.5113 -1.4387 -0.0864 9 9 6.0118 -2.0911 1.0454 10 9 5.9597 -2.0936 -1.2386 11 9 5.9610 -0.1140 -0.0982 12 6 3.4903 -0.7414 1.2090 13 7 2.0209 -0.6952 1.1987 14 6 1.5055 -0.0645 2.4212 15 6 2.2255 -0.6479 3.6386 16 6 1.6971 -0.0004 4.8927 17 1 0.9247 0.7517 4.8279 18 6 2.1998 -0.3682 6.1227 19 7 1.7383 0.1966 7.2172 20 14 3.5361 -1.6684 6.2348 21 1 4.8685 -1.0164 6.1627 22 1 3.4109 -2.3974 7.5225 23 1 3.3917 -2.6252 5.1084 24 1 -0.3633 -1.0277 0.0019 25 1 -0.3632 0.5155 0.8889 26 1 -0.3633 0.5121 -0.8909 27 1 1.6331 -1.7343 -1.2761 28 1 1.7273 -0.1795 -2.1390 29 1 3.8863 0.2739 1.2285 30 1 3.8312 -1.2826 2.0916 31 1 1.6797 1.0106 2.3766 32 1 0.4357 -0.2559 2.5055 33 1 2.0512 -1.7230 3.6832 34 1 3.2952 -0.4564 3.5543 35 1 2.0916 -0.0624 8.0827 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586777658.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:04 Heat of formation + Delta-G solvation = -215.858743 kcal Electronic energy + Delta-G solvation = -21762.001882 eV Core-core repulsion = 17958.248030 eV Total energy + Delta-G solvation = -3803.753852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -51.22069 -48.74501 -48.69315 -41.05861 -37.68737 -35.23070 -34.17738 -32.44710 -30.11677 -28.10764 -26.27298 -25.54479 -23.35510 -22.23166 -21.18269 -19.67749 -19.43725 -19.32917 -18.78666 -17.43301 -16.85498 -16.40446 -16.33871 -16.08486 -15.62694 -15.53764 -15.20869 -15.12904 -14.96191 -14.85368 -14.82370 -14.73292 -14.56541 -13.71371 -13.45857 -13.13997 -12.91698 -12.81980 -12.59989 -12.26043 -11.99296 -11.87846 -11.76413 -11.58470 -11.33657 -10.82285 -10.77841 -9.46460 -8.31972 -6.36457 1.34890 1.35977 1.36546 1.47940 2.17691 2.33833 2.45277 2.83701 3.02115 3.03750 3.37747 3.54274 3.73824 3.84924 3.98873 4.18608 4.31141 4.40458 4.48388 4.56577 4.63420 4.77108 4.82347 4.87088 5.02495 5.23898 5.32953 5.38219 5.57876 5.68461 5.88518 6.01154 6.24868 6.71159 7.28356 8.84517 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.018121 B = 0.006995 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.772936 B = 4001.723970 C = 5246.023708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.034 3.966 3 H 0.041 0.959 4 C 0.074 3.926 5 O -0.379 6.379 6 C 0.059 3.941 7 H 0.130 0.870 8 C 0.468 3.532 9 F -0.175 7.175 10 F -0.174 7.174 11 F -0.183 7.183 12 C 0.015 3.985 13 N -0.530 5.530 14 C 0.084 3.916 15 C -0.009 4.009 16 C -0.532 4.532 17 H 0.034 0.966 18 C 0.009 3.991 19 N -0.949 5.949 20 Si 0.943 3.057 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.243 1.243 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.019 0.981 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.018 0.982 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -4.942 -19.871 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.075 4.075 3 H 0.059 0.941 4 C -0.002 4.002 5 O -0.298 6.298 6 C -0.001 4.001 7 H 0.147 0.853 8 C 0.413 3.587 9 F -0.156 7.156 10 F -0.156 7.156 11 F -0.164 7.164 12 C -0.114 4.114 13 N -0.255 5.255 14 C -0.043 4.043 15 C -0.047 4.047 16 C -0.571 4.571 17 H 0.053 0.947 18 C -0.188 4.188 19 N -0.589 5.589 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.166 1.166 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.154 0.846 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.563 -5.334 -19.865 20.875 hybrid contribution 0.861 0.684 1.123 1.572 sum 4.424 -4.649 -18.743 19.811 Atomic orbital electron populations 1.21757 0.91626 1.03383 1.02865 1.22554 0.98094 0.96135 0.90679 0.94115 1.23091 0.77327 1.02087 0.97651 1.87951 1.23872 1.77936 1.40021 1.23135 0.87434 1.01274 0.88219 0.85299 1.20148 0.91265 0.73640 0.73633 1.93221 1.89108 1.81433 1.51862 1.93199 1.91059 1.81154 1.50143 1.93184 1.91142 1.36007 1.96106 1.22777 0.90535 1.00373 0.97667 1.62377 1.06298 1.53864 1.02964 1.21886 0.99802 0.94940 0.87632 1.19615 0.95657 0.96889 0.92529 1.21358 1.21699 1.22493 0.91502 0.94719 1.25934 0.99129 0.98548 0.95199 1.70058 1.45100 1.44980 0.98763 0.85763 0.79231 0.79901 0.78496 1.19386 1.20851 1.16583 0.91064 0.93292 0.89310 0.90115 0.84646 0.93837 0.88541 0.96285 0.90393 0.95360 0.96413 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.89 71.98 0.64 -2.14 16 2 C 0.03 0.80 2.55 44.93 0.11 0.92 16 3 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.07 1.38 6.29 72.01 0.45 1.83 16 5 O -0.38 -9.02 10.36 -148.98 -1.54 -10.56 16 6 C 0.06 1.46 2.78 30.63 0.09 1.55 16 7 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 8 C 0.47 11.94 2.85 71.98 0.21 12.14 16 9 F -0.17 -4.64 16.86 44.97 0.76 -3.88 16 10 F -0.17 -4.27 17.26 44.97 0.78 -3.50 16 11 F -0.18 -5.15 16.69 44.97 0.75 -4.40 16 12 C 0.02 0.46 3.98 86.32 0.34 0.80 16 13 N -0.53 -16.14 4.69 -870.01 -4.08 -20.21 16 14 C 0.08 3.20 4.42 86.30 0.38 3.58 16 15 C -0.01 -0.43 3.31 29.85 0.10 -0.33 16 16 C -0.53 -30.27 9.66 25.60 0.25 -30.02 16 17 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 18 C 0.01 0.53 5.47 84.65 0.46 1.00 16 19 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 20 Si 0.94 43.93 27.47 68.60 1.88 45.82 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.17 6.61 -2.39 -0.02 1.15 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.04 1.41 7.72 -2.38 -0.02 1.39 16 30 H 0.10 3.14 5.81 -2.39 -0.01 3.13 16 31 H 0.02 0.75 8.08 -2.39 -0.02 0.74 16 32 H 0.08 2.95 6.87 -2.38 -0.02 2.93 16 33 H 0.03 1.28 7.20 -2.39 -0.02 1.27 16 34 H 0.02 0.80 5.70 -2.39 -0.01 0.78 16 35 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -65.04 291.40 2.92 -62.11 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: 1.04 Total: 4.19 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.03 Total: -10.67 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -3.78 Total: -79.12 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -1.54 Total: -10.56 kcal Atomic # 9 Polarization: -14.06 SS G_CDS: 2.29 Total: -11.77 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -65.04 2.92 -62.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586777658.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.744 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds