Wall clock time and date at job start Mon Mar 30 2020 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99834 * 2 1 4 4 H 1.48500 * 109.46804 * 269.99908 * 3 2 1 5 5 H 1.48499 * 109.47000 * 29.99994 * 3 2 1 6 6 H 1.48498 * 109.46933 * 149.99995 * 3 2 1 7 7 C 1.37878 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47186 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46857 * 180.02562 * 10 9 7 12 12 C 1.48720 * 111.01831 * 54.49058 * 11 10 9 13 13 C 1.54381 * 104.51692 * 158.96284 * 12 11 10 14 14 C 1.54257 * 105.14978 * 336.27274 * 13 12 11 15 15 H 1.08995 * 110.32672 * 118.84838 * 14 13 12 16 16 C 1.53009 * 110.32339 * 240.95010 * 14 13 12 17 17 H 1.08994 * 109.47500 * 178.54660 * 16 14 13 18 18 O 1.42903 * 109.46828 * 58.54318 * 16 14 13 19 19 C 1.52998 * 109.46894 * 298.54554 * 16 14 13 20 20 F 1.39908 * 109.46906 * 59.99807 * 19 16 14 21 21 F 1.39898 * 109.47457 * 179.97438 * 19 16 14 22 22 F 1.39895 * 109.47248 * 300.00125 * 19 16 14 23 23 C 1.48567 * 110.99718 * 170.00040 * 11 10 9 24 24 H 0.96998 * 120.00087 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47124 * 59.99837 * 9 7 2 26 26 H 1.09000 * 109.47065 * 299.99675 * 9 7 2 27 27 H 1.09003 * 109.47184 * 59.99920 * 10 9 7 28 28 H 1.09000 * 109.46892 * 299.99828 * 10 9 7 29 29 H 1.09004 * 110.38960 * 40.24251 * 12 11 10 30 30 H 1.08996 * 110.50963 * 277.74694 * 12 11 10 31 31 H 1.09002 * 110.32526 * 217.32092 * 13 12 11 32 32 H 1.08998 * 110.32190 * 95.21733 * 13 12 11 33 33 H 0.96701 * 114.00126 * 300.00120 * 18 16 14 34 34 H 1.08999 * 110.41133 * 82.17552 * 23 11 10 35 35 H 1.09001 * 110.41003 * 319.73948 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5108 -4.9342 -0.0001 12 6 0.5462 -4.9926 -1.1305 13 6 0.2739 -6.4991 -1.3294 14 6 1.5098 -7.2129 -0.7441 15 1 1.2173 -7.8586 0.0839 16 6 2.2159 -8.0287 -1.8290 17 1 3.1004 -8.5058 -1.4072 18 8 2.6052 -7.1636 -2.8978 19 6 1.2633 -9.1008 -2.3619 20 9 0.1279 -8.4884 -2.9034 21 9 1.9085 -9.8464 -3.3543 22 9 0.8821 -9.9476 -1.3156 23 6 2.4276 -6.0781 -0.2409 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 0.9887 -4.5643 -2.0299 30 1 -0.3754 -4.4704 -0.8735 31 1 0.1712 -6.7285 -2.3901 32 1 -0.6255 -6.7958 -0.7898 33 1 1.8668 -6.7045 -3.3211 34 1 2.9215 -6.3711 0.6855 35 1 3.1654 -5.8206 -1.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595521268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:27 Heat of formation + Delta-G solvation = -204.074620 kcal Electronic energy + Delta-G solvation = -21282.306609 eV Core-core repulsion = 17479.063755 eV Total energy + Delta-G solvation = -3803.242854 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.43471 -47.97569 -47.85399 -39.56368 -36.90728 -33.70320 -32.20568 -30.06531 -28.98070 -27.38791 -24.46819 -23.23399 -21.97911 -20.57189 -19.64202 -18.88203 -18.80933 -18.38312 -16.75014 -16.47178 -15.71835 -14.98085 -14.70972 -14.63659 -14.49585 -14.41032 -14.26828 -14.06796 -14.00104 -13.79248 -13.71580 -12.87818 -12.58586 -12.08041 -11.95414 -11.70455 -11.27431 -11.05967 -10.96597 -10.88180 -10.74461 -10.50057 -10.34912 -9.93238 -9.37249 -9.15740 -8.37076 -7.93435 -6.01916 -4.04499 2.38825 3.30928 3.37149 3.37875 3.40777 3.44366 3.67289 4.06966 4.29732 4.43825 4.50634 4.74602 4.82850 5.05812 5.17000 5.34288 5.49472 5.63954 5.81704 5.91865 6.00093 6.14670 6.26320 6.37375 6.45393 6.88572 6.94466 7.34659 7.41085 7.69496 7.83641 8.02730 8.40321 9.02382 9.59523 11.09464 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.047100 B = 0.003805 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.335966 B = 7356.101907 C = 7428.025514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.051 3.949 11 N -0.510 5.510 12 C 0.039 3.961 13 C -0.144 4.144 14 C -0.129 4.129 15 H 0.099 0.901 16 C 0.080 3.920 17 H 0.142 0.858 18 O -0.527 6.527 19 C 0.420 3.580 20 F -0.177 7.177 21 F -0.180 7.180 22 F -0.179 7.179 23 C 0.041 3.959 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.024 0.976 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.386 0.614 34 H 0.079 0.921 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -18.850 -4.682 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.076 4.076 11 N -0.234 5.234 12 C -0.089 4.089 13 C -0.181 4.181 14 C -0.148 4.148 15 H 0.118 0.882 16 C 0.018 3.982 17 H 0.160 0.840 18 O -0.334 6.334 19 C 0.365 3.635 20 F -0.158 7.158 21 F -0.161 7.161 22 F -0.160 7.160 23 C -0.087 4.087 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.237 0.763 34 H 0.097 0.903 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.420 -18.977 -4.012 19.547 hybrid contribution 0.095 0.984 -0.980 1.392 sum 2.515 -17.993 -4.992 18.842 Atomic orbital electron populations 1.69963 1.06044 1.26629 1.50636 1.24988 0.94826 0.99201 0.95237 0.86592 0.79869 0.83449 0.78081 1.20692 1.21182 1.19857 1.21183 0.93003 0.91019 1.50941 0.92755 1.19140 0.93977 0.90356 0.97786 1.22506 0.97148 0.88618 0.99299 1.65543 1.13894 1.03295 1.40690 1.23076 0.98268 0.94274 0.93287 1.22878 0.97424 0.96223 1.01617 1.22666 0.96834 0.98087 0.97264 0.88246 1.23206 0.97511 0.88548 0.88937 0.84014 1.86693 1.37657 1.60198 1.48854 1.21797 0.81518 0.83864 0.76319 1.93107 1.54109 1.81792 1.86823 1.93206 1.81191 1.78598 1.63152 1.93189 1.92070 1.73207 1.57583 1.23039 0.94737 0.90733 1.00193 0.92972 0.96418 0.95768 0.91811 0.95791 0.93705 0.89482 0.90089 0.90325 0.76343 0.90263 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.63 4.69 -27.88 -0.13 0.50 16 10 C 0.05 1.07 5.00 -3.82 -0.02 1.05 16 11 N -0.51 -8.90 5.49 -229.82 -1.26 -10.16 16 12 C 0.04 0.62 5.12 -2.09 -0.01 0.61 16 13 C -0.14 -1.72 5.25 -25.35 -0.13 -1.85 16 14 C -0.13 -1.40 2.85 -89.24 -0.25 -1.66 16 15 H 0.10 1.01 7.86 -51.93 -0.41 0.60 16 16 C 0.08 0.75 2.93 -26.73 -0.08 0.67 16 17 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 18 O -0.53 -5.54 12.30 -35.23 -0.43 -5.97 16 19 C 0.42 4.11 2.83 37.16 0.11 4.22 16 20 F -0.18 -1.82 13.52 2.25 0.03 -1.79 16 21 F -0.18 -1.93 17.26 2.25 0.04 -1.89 16 22 F -0.18 -1.81 16.84 2.25 0.04 -1.78 16 23 C 0.04 0.56 5.95 -2.18 -0.01 0.55 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.47 6.84 -51.93 -0.36 0.11 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.02 0.49 7.88 -51.93 -0.41 0.08 16 29 H 0.04 0.73 8.00 -51.93 -0.42 0.31 16 30 H 0.09 1.54 7.68 -51.93 -0.40 1.14 16 31 H 0.08 0.84 4.14 -51.93 -0.21 0.63 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.39 3.42 7.11 45.56 0.32 3.74 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.77 6.83 -51.93 -0.35 0.42 16 LS Contribution 291.80 15.07 4.40 4.40 Total: -1.00 -30.42 291.80 -6.31 -36.73 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.89 Total: -0.75 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.94 Total: -9.35 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.52 Total: -36.11 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.43 Total: -5.97 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.11 Total: -5.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.42 -6.31 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595521268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.347 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds