Wall clock time and date at job start Mon Mar 30 2020 04:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99834 * 2 1 4 4 H 1.48500 * 109.46804 * 269.99908 * 3 2 1 5 5 H 1.48499 * 109.47000 * 29.99994 * 3 2 1 6 6 H 1.48498 * 109.46933 * 149.99995 * 3 2 1 7 7 C 1.37878 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47186 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46857 * 180.02562 * 10 9 7 12 12 C 1.48720 * 111.01831 * 54.49058 * 11 10 9 13 13 C 1.54381 * 104.51692 * 158.96284 * 12 11 10 14 14 C 1.54257 * 105.14978 * 336.27274 * 13 12 11 15 15 H 1.08995 * 110.32672 * 118.84838 * 14 13 12 16 16 C 1.53009 * 110.32339 * 240.95010 * 14 13 12 17 17 H 1.08994 * 109.47500 * 178.54660 * 16 14 13 18 18 O 1.42903 * 109.46828 * 58.54318 * 16 14 13 19 19 C 1.52998 * 109.46894 * 298.54554 * 16 14 13 20 20 F 1.39908 * 109.46906 * 59.99807 * 19 16 14 21 21 F 1.39898 * 109.47457 * 179.97438 * 19 16 14 22 22 F 1.39895 * 109.47248 * 300.00125 * 19 16 14 23 23 C 1.48567 * 110.99718 * 170.00040 * 11 10 9 24 24 H 0.96998 * 120.00087 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47124 * 59.99837 * 9 7 2 26 26 H 1.09000 * 109.47065 * 299.99675 * 9 7 2 27 27 H 1.09003 * 109.47184 * 59.99920 * 10 9 7 28 28 H 1.09000 * 109.46892 * 299.99828 * 10 9 7 29 29 H 1.09004 * 110.38960 * 40.24251 * 12 11 10 30 30 H 1.08996 * 110.50963 * 277.74694 * 12 11 10 31 31 H 1.09002 * 110.32526 * 217.32092 * 13 12 11 32 32 H 1.08998 * 110.32190 * 95.21733 * 13 12 11 33 33 H 0.96701 * 114.00126 * 300.00120 * 18 16 14 34 34 H 1.08999 * 110.41133 * 82.17552 * 23 11 10 35 35 H 1.09001 * 110.41003 * 319.73948 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5108 -4.9342 -0.0001 12 6 0.5462 -4.9926 -1.1305 13 6 0.2739 -6.4991 -1.3294 14 6 1.5098 -7.2129 -0.7441 15 1 1.2173 -7.8586 0.0839 16 6 2.2159 -8.0287 -1.8290 17 1 3.1004 -8.5058 -1.4072 18 8 2.6052 -7.1636 -2.8978 19 6 1.2633 -9.1008 -2.3619 20 9 0.1279 -8.4884 -2.9034 21 9 1.9085 -9.8464 -3.3543 22 9 0.8821 -9.9476 -1.3156 23 6 2.4276 -6.0781 -0.2409 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8895 29 1 0.9887 -4.5643 -2.0299 30 1 -0.3754 -4.4704 -0.8735 31 1 0.1712 -6.7285 -2.3901 32 1 -0.6255 -6.7958 -0.7898 33 1 1.8668 -6.7045 -3.3211 34 1 2.9215 -6.3711 0.6855 35 1 3.1654 -5.8206 -1.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595521268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:26 Heat of formation + Delta-G solvation = -226.264099 kcal Electronic energy + Delta-G solvation = -21283.268817 eV Core-core repulsion = 17479.063755 eV Total energy + Delta-G solvation = -3804.205062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.21946 -48.76587 -48.64011 -40.62923 -37.98718 -35.51997 -33.77478 -31.33525 -30.39720 -28.58854 -26.24361 -24.13060 -23.58547 -21.70455 -21.04672 -19.66663 -19.62596 -19.18710 -18.55723 -17.68832 -16.84861 -16.52947 -15.96034 -15.81014 -15.49409 -15.33225 -15.09802 -15.07577 -14.99438 -14.86261 -14.77597 -14.35759 -13.91479 -13.71168 -13.34488 -13.05478 -12.75404 -12.62443 -12.42386 -12.22972 -12.08711 -11.78467 -11.75949 -11.30390 -11.29639 -11.15827 -10.55772 -9.34901 -8.20691 -6.32123 1.40487 1.41786 1.52998 1.61064 2.40147 2.59288 2.68492 2.87207 3.12969 3.17338 3.40035 3.57836 3.60875 3.81654 4.15311 4.24476 4.41081 4.49756 4.57791 4.58884 4.79050 4.81807 5.02259 5.06217 5.13839 5.16043 5.44600 5.62365 5.78128 5.97360 6.12300 6.24151 6.30512 6.84800 7.37300 8.91322 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.047100 B = 0.003805 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.335966 B = 7356.101907 C = 7428.025514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.069 3.931 11 N -0.525 5.525 12 C 0.037 3.963 13 C -0.134 4.134 14 C -0.119 4.119 15 H 0.115 0.885 16 C 0.088 3.912 17 H 0.166 0.834 18 O -0.538 6.538 19 C 0.424 3.576 20 F -0.181 7.181 21 F -0.184 7.184 22 F -0.179 7.179 23 C 0.042 3.958 24 H 0.264 0.736 25 H -0.003 1.003 26 H -0.010 1.010 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.392 0.608 34 H 0.093 0.907 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.575 -19.754 -4.912 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.059 4.059 11 N -0.249 5.249 12 C -0.092 4.092 13 C -0.172 4.172 14 C -0.138 4.138 15 H 0.133 0.867 16 C 0.027 3.973 17 H 0.183 0.817 18 O -0.346 6.346 19 C 0.369 3.631 20 F -0.162 7.162 21 F -0.166 7.166 22 F -0.161 7.161 23 C -0.085 4.085 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.008 0.992 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.243 0.757 34 H 0.111 0.889 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.732 -19.903 -4.247 20.690 hybrid contribution -0.360 1.231 -0.907 1.571 sum 3.372 -18.671 -5.154 19.661 Atomic orbital electron populations 1.70100 1.07819 1.27790 1.51440 1.25945 0.95725 1.03284 0.94575 0.85444 0.78682 0.78388 0.78512 1.19726 1.20745 1.18710 1.21630 0.93530 0.92315 1.50939 0.92203 1.18960 0.94222 0.92142 0.95092 1.22126 0.95765 0.88775 0.99261 1.65454 1.14795 1.02936 1.41752 1.23038 0.96676 0.97030 0.92411 1.22830 0.98217 0.93090 1.03042 1.22590 0.95557 0.97455 0.98208 0.86724 1.23246 0.98019 0.88017 0.88065 0.81727 1.86686 1.38325 1.60423 1.49148 1.21797 0.81317 0.83820 0.76138 1.93095 1.54396 1.81817 1.86908 1.93201 1.81272 1.78715 1.63379 1.93193 1.92073 1.73270 1.57534 1.23095 0.94519 0.89832 1.01095 0.92751 0.98439 0.99155 0.91854 0.95683 0.94380 0.92358 0.88287 0.90050 0.75693 0.88879 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.77 4.69 29.85 0.14 1.91 16 10 C 0.07 2.88 5.00 86.30 0.43 3.32 16 11 N -0.53 -18.24 5.49 -881.03 -4.83 -23.08 16 12 C 0.04 1.18 5.12 86.42 0.44 1.62 16 13 C -0.13 -3.02 5.25 31.49 0.17 -2.86 16 14 C -0.12 -2.29 2.85 -9.90 -0.03 -2.31 16 15 H 0.11 1.94 7.86 -2.39 -0.02 1.92 16 16 C 0.09 1.40 2.93 30.60 0.09 1.48 16 17 H 0.17 1.91 8.14 -2.39 -0.02 1.89 16 18 O -0.54 -10.04 12.30 -148.98 -1.83 -11.87 16 19 C 0.42 7.21 2.83 71.98 0.20 7.41 16 20 F -0.18 -3.31 13.52 44.97 0.61 -2.70 16 21 F -0.18 -3.51 17.26 44.97 0.78 -2.74 16 22 F -0.18 -3.15 16.84 44.97 0.76 -2.39 16 23 C 0.04 1.06 5.95 86.45 0.51 1.57 16 24 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 25 H 0.00 -0.15 6.84 -2.39 -0.02 -0.17 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.02 1.03 7.88 -2.39 -0.02 1.01 16 29 H 0.04 1.26 8.00 -2.38 -0.02 1.24 16 30 H 0.06 2.18 7.68 -2.39 -0.02 2.16 16 31 H 0.10 1.88 4.14 -2.39 -0.01 1.87 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.39 6.18 7.11 -74.06 -0.53 5.66 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.42 6.83 -2.39 -0.02 1.40 16 Total: -1.00 -65.90 291.80 1.03 -64.87 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.59 Total: 6.46 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 2.65 Total: -18.19 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -4.55 Total: -79.65 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -1.83 Total: -11.87 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 2.14 Total: -7.83 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -65.90 1.03 -64.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595521268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.392 kcal (2) G-P(sol) polarization free energy of solvation -65.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds