Wall clock time and date at job start Mon Mar 30 2020 04:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00406 * 2 1 4 4 H 1.48493 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46972 * 300.00151 * 3 2 1 6 6 H 1.48506 * 109.46685 * 59.99929 * 3 2 1 7 7 C 1.37881 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47034 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.46872 * 180.02562 * 10 9 7 12 12 C 1.48537 * 111.00268 * 287.39842 * 11 10 9 13 13 C 1.54937 * 103.22920 * 200.27880 * 12 11 10 14 14 C 1.54596 * 102.92013 * 37.41287 * 13 12 11 15 15 H 1.09008 * 110.39386 * 97.00201 * 14 13 12 16 16 C 1.52997 * 110.31075 * 219.12657 * 14 13 12 17 17 H 1.09000 * 109.47140 * 55.71563 * 16 14 13 18 18 O 1.42906 * 109.47139 * 175.72036 * 16 14 13 19 19 C 1.53006 * 109.47164 * 295.71614 * 16 14 13 20 20 F 1.39900 * 109.46764 * 59.99811 * 19 16 14 21 21 F 1.39897 * 109.47129 * 179.97438 * 19 16 14 22 22 F 1.39903 * 109.46814 * 300.00282 * 19 16 14 23 23 C 1.47901 * 110.99827 * 170.00315 * 11 10 9 24 24 H 0.96995 * 119.99565 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46408 * 60.00300 * 9 7 2 26 26 H 1.08993 * 109.47098 * 300.00579 * 9 7 2 27 27 H 1.09001 * 109.46621 * 60.00490 * 10 9 7 28 28 H 1.09000 * 109.47338 * 300.00463 * 10 9 7 29 29 H 1.09005 * 110.66821 * 318.71577 * 12 11 10 30 30 H 1.09005 * 110.66589 * 81.67825 * 12 11 10 31 31 H 1.08999 * 110.72386 * 279.05770 * 13 12 11 32 32 H 1.08999 * 110.72209 * 155.77121 * 13 12 11 33 33 H 0.96693 * 114.00047 * 60.00288 * 18 16 14 34 34 H 1.08995 * 109.91829 * 26.49244 * 23 11 10 35 35 H 1.08999 * 109.91599 * 265.19456 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4993 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 7 1.5106 -4.9343 -0.0024 12 6 0.8859 -5.1890 1.3209 13 6 0.6395 -6.7186 1.3082 14 6 1.8854 -7.2633 0.5725 15 1 2.6339 -7.5989 1.2904 16 6 1.4922 -8.4114 -0.3592 17 1 0.7173 -8.0723 -1.0467 18 8 2.6368 -8.8348 -1.1027 19 6 0.9613 -9.5824 0.4703 20 9 -0.1592 -9.1679 1.1983 21 9 0.6012 -10.6320 -0.3817 22 9 1.9559 -10.0175 1.3528 23 6 2.4231 -6.0731 -0.2434 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8724 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 1.5670 -4.9157 2.1269 30 1 -0.0547 -4.6460 1.4131 31 1 -0.2696 -6.9582 0.7566 32 1 0.5899 -7.1097 2.3244 33 1 3.3677 -9.1503 -0.5538 34 1 3.4296 -5.8193 0.0893 35 1 2.4319 -6.3238 -1.3041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595521271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:38 Heat of formation + Delta-G solvation = -210.096661 kcal Electronic energy + Delta-G solvation = -21050.175032 eV Core-core repulsion = 17246.671042 eV Total energy + Delta-G solvation = -3803.503989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.37812 -47.89581 -47.83757 -39.38753 -37.14799 -33.80985 -32.28465 -29.87172 -28.90427 -27.46209 -24.44345 -23.14891 -21.74720 -20.73449 -19.99593 -18.85393 -18.67168 -18.46985 -16.70313 -16.43423 -15.59576 -14.95625 -14.77388 -14.66372 -14.42140 -14.34596 -14.26715 -14.09815 -13.97973 -13.83219 -13.49308 -12.66594 -12.61100 -12.31478 -11.96973 -11.87844 -11.34035 -11.17453 -11.03881 -10.86245 -10.76429 -10.53884 -10.40197 -9.84969 -9.40688 -9.12338 -8.35017 -7.90336 -6.00471 -4.03054 2.40937 3.30512 3.37960 3.39425 3.41824 3.43885 3.68061 4.10776 4.33598 4.39100 4.48933 4.62997 4.80771 5.01166 5.30254 5.35647 5.43770 5.57232 5.81112 5.86580 6.03658 6.08793 6.20407 6.37526 6.40316 6.90723 6.93613 7.34416 7.43059 7.74416 7.87498 8.06520 8.41995 9.04506 9.60839 11.10957 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.049627 B = 0.003624 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.068023 B = 7723.918306 C = 7952.890892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.030 3.970 10 C 0.054 3.946 11 N -0.517 5.517 12 C 0.039 3.961 13 C -0.121 4.121 14 C -0.135 4.135 15 H 0.087 0.913 16 C 0.085 3.915 17 H 0.147 0.853 18 O -0.529 6.529 19 C 0.418 3.582 20 F -0.175 7.175 21 F -0.180 7.180 22 F -0.186 7.186 23 C 0.048 3.952 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.016 0.984 27 H 0.023 0.977 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.384 0.616 34 H 0.045 0.955 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -19.979 2.176 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.073 4.073 11 N -0.241 5.241 12 C -0.089 4.089 13 C -0.159 4.159 14 C -0.154 4.154 15 H 0.105 0.895 16 C 0.023 3.977 17 H 0.165 0.835 18 O -0.334 6.334 19 C 0.364 3.636 20 F -0.156 7.156 21 F -0.161 7.161 22 F -0.168 7.168 23 C -0.080 4.080 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.233 0.767 34 H 0.064 0.936 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.243 -19.668 1.270 19.836 hybrid contribution 1.319 0.518 1.344 1.952 sum 3.561 -19.151 2.614 19.654 Atomic orbital electron populations 1.69981 1.06028 1.26476 1.50701 1.24992 0.94822 0.99180 0.95290 0.86547 0.80075 0.83836 0.77598 1.19788 1.20954 1.21040 1.21235 0.92996 0.91088 1.50831 0.92781 1.19041 0.93912 0.89976 0.97850 1.22522 0.96859 0.88820 0.99075 1.64917 1.28809 1.02102 1.28259 1.23214 1.00675 0.94121 0.90865 1.22716 0.96788 0.96222 1.00180 1.22792 0.99987 0.95365 0.97302 0.89461 1.23358 0.91332 0.88690 0.94303 0.83524 1.86725 1.25488 1.85205 1.35965 1.21796 0.76442 0.85802 0.79585 1.93207 1.53625 1.89820 1.78945 1.93204 1.92003 1.60627 1.70274 1.93160 1.61511 1.91161 1.70953 1.22785 0.95235 0.89624 1.00402 0.93040 0.95687 0.96583 0.95890 0.92057 0.93898 0.89309 0.89928 0.90752 0.76737 0.93636 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.77 5.06 -27.88 -0.14 0.63 16 10 C 0.05 1.13 4.64 -3.83 -0.02 1.11 16 11 N -0.52 -9.00 5.24 -230.45 -1.21 -10.20 16 12 C 0.04 0.61 5.91 -1.90 -0.01 0.60 16 13 C -0.12 -1.44 4.92 -24.87 -0.12 -1.56 16 14 C -0.14 -1.44 2.64 -89.26 -0.24 -1.68 16 15 H 0.09 0.82 7.79 -51.92 -0.40 0.42 16 16 C 0.08 0.81 2.35 -26.73 -0.06 0.75 16 17 H 0.15 1.43 8.11 -51.93 -0.42 1.01 16 18 O -0.53 -4.84 12.71 -35.23 -0.45 -5.29 16 19 C 0.42 4.12 2.84 37.16 0.11 4.22 16 20 F -0.17 -1.85 14.46 2.25 0.03 -1.82 16 21 F -0.18 -1.95 17.26 2.25 0.04 -1.91 16 22 F -0.19 -1.80 16.41 2.25 0.04 -1.76 16 23 C 0.05 0.65 6.11 -2.75 -0.02 0.63 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.02 0.43 7.37 -51.93 -0.38 0.05 16 27 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 28 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 29 H 0.04 0.67 7.81 -51.93 -0.41 0.27 16 30 H 0.09 1.51 7.80 -51.93 -0.40 1.10 16 31 H 0.08 0.97 7.04 -51.93 -0.37 0.60 16 32 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 33 H 0.38 2.22 8.69 45.56 0.40 2.61 16 34 H 0.05 0.61 7.77 -51.93 -0.40 0.20 16 35 H 0.09 1.16 7.41 -51.93 -0.38 0.77 16 LS Contribution 297.13 15.07 4.48 4.48 Total: -1.00 -30.75 297.13 -6.25 -37.00 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.98 Total: -2.16 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.91 Total: -8.79 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.47 Total: -36.28 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.45 Total: -5.29 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.11 Total: -5.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.75 -6.25 -37.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595521271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.094 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds