Wall clock time and date at job start Mon Mar 30 2020 04:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00406 * 2 1 4 4 H 1.48493 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46972 * 300.00151 * 3 2 1 6 6 H 1.48506 * 109.46685 * 59.99929 * 3 2 1 7 7 C 1.37881 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47034 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.46872 * 180.02562 * 10 9 7 12 12 C 1.48537 * 111.00268 * 287.39842 * 11 10 9 13 13 C 1.54937 * 103.22920 * 200.27880 * 12 11 10 14 14 C 1.54596 * 102.92013 * 37.41287 * 13 12 11 15 15 H 1.09008 * 110.39386 * 97.00201 * 14 13 12 16 16 C 1.52997 * 110.31075 * 219.12657 * 14 13 12 17 17 H 1.09000 * 109.47140 * 55.71563 * 16 14 13 18 18 O 1.42906 * 109.47139 * 175.72036 * 16 14 13 19 19 C 1.53006 * 109.47164 * 295.71614 * 16 14 13 20 20 F 1.39900 * 109.46764 * 59.99811 * 19 16 14 21 21 F 1.39897 * 109.47129 * 179.97438 * 19 16 14 22 22 F 1.39903 * 109.46814 * 300.00282 * 19 16 14 23 23 C 1.47901 * 110.99827 * 170.00315 * 11 10 9 24 24 H 0.96995 * 119.99565 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46408 * 60.00300 * 9 7 2 26 26 H 1.08993 * 109.47098 * 300.00579 * 9 7 2 27 27 H 1.09001 * 109.46621 * 60.00490 * 10 9 7 28 28 H 1.09000 * 109.47338 * 300.00463 * 10 9 7 29 29 H 1.09005 * 110.66821 * 318.71577 * 12 11 10 30 30 H 1.09005 * 110.66589 * 81.67825 * 12 11 10 31 31 H 1.08999 * 110.72386 * 279.05770 * 13 12 11 32 32 H 1.08999 * 110.72209 * 155.77121 * 13 12 11 33 33 H 0.96693 * 114.00047 * 60.00288 * 18 16 14 34 34 H 1.08995 * 109.91829 * 26.49244 * 23 11 10 35 35 H 1.08999 * 109.91599 * 265.19456 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4993 -0.0005 10 6 2.2452 -3.6622 -0.0018 11 7 1.5106 -4.9343 -0.0024 12 6 0.8859 -5.1890 1.3209 13 6 0.6395 -6.7186 1.3082 14 6 1.8854 -7.2633 0.5725 15 1 2.6339 -7.5989 1.2904 16 6 1.4922 -8.4114 -0.3592 17 1 0.7173 -8.0723 -1.0467 18 8 2.6368 -8.8348 -1.1027 19 6 0.9613 -9.5824 0.4703 20 9 -0.1592 -9.1679 1.1983 21 9 0.6012 -10.6320 -0.3817 22 9 1.9559 -10.0175 1.3528 23 6 2.4231 -6.0731 -0.2434 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8724 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8922 29 1 1.5670 -4.9157 2.1269 30 1 -0.0547 -4.6460 1.4131 31 1 -0.2696 -6.9582 0.7566 32 1 0.5899 -7.1097 2.3244 33 1 3.3677 -9.1503 -0.5538 34 1 3.4296 -5.8193 0.0893 35 1 2.4319 -6.3238 -1.3041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595521271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:38 Heat of formation + Delta-G solvation = -232.585104 kcal Electronic energy + Delta-G solvation = -21051.150204 eV Core-core repulsion = 17246.671042 eV Total energy + Delta-G solvation = -3804.479161 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.16361 -48.66630 -48.64555 -40.45525 -38.10869 -35.60802 -33.89090 -31.25734 -30.21197 -28.64314 -26.24146 -24.04564 -23.30818 -21.70451 -21.55334 -19.64054 -19.47314 -19.25448 -18.55625 -17.55293 -16.74683 -16.53451 -15.99814 -15.68215 -15.53835 -15.36672 -15.25272 -15.05266 -14.78579 -14.77016 -14.54723 -14.29564 -13.89948 -13.72173 -13.40704 -13.09060 -12.87326 -12.75766 -12.43353 -12.33334 -12.11642 -11.78089 -11.69132 -11.38810 -11.27702 -11.15404 -10.55327 -9.28772 -8.19912 -6.31420 1.40683 1.41139 1.54327 1.62638 2.40590 2.62997 2.70025 2.88655 3.13757 3.16692 3.31671 3.53034 3.68186 3.79830 4.13045 4.31074 4.36946 4.47745 4.49778 4.62240 4.78816 4.89458 4.99855 5.03098 5.12956 5.16636 5.46147 5.63732 5.79019 6.05009 6.15731 6.31379 6.39552 6.86320 7.38045 8.92507 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.049627 B = 0.003624 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.068023 B = 7723.918306 C = 7952.890892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.037 3.963 10 C 0.072 3.928 11 N -0.535 5.535 12 C 0.035 3.965 13 C -0.111 4.111 14 C -0.123 4.123 15 H 0.109 0.891 16 C 0.095 3.905 17 H 0.145 0.855 18 O -0.535 6.535 19 C 0.423 3.577 20 F -0.179 7.179 21 F -0.185 7.185 22 F -0.183 7.183 23 C 0.049 3.951 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.399 0.601 34 H 0.052 0.948 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -20.813 2.464 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.056 4.056 11 N -0.259 5.259 12 C -0.093 4.093 13 C -0.149 4.149 14 C -0.143 4.143 15 H 0.127 0.873 16 C 0.033 3.967 17 H 0.162 0.838 18 O -0.343 6.343 19 C 0.369 3.631 20 F -0.161 7.161 21 F -0.167 7.167 22 F -0.164 7.164 23 C -0.079 4.079 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.010 0.990 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.251 0.749 34 H 0.070 0.930 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.745 -20.531 1.564 20.929 hybrid contribution 0.834 0.734 1.251 1.673 sum 4.579 -19.798 2.815 20.514 Atomic orbital electron populations 1.70118 1.07859 1.27707 1.51528 1.25964 0.95728 1.03335 0.94623 0.85382 0.79078 0.78685 0.77786 1.18501 1.20375 1.20361 1.21673 0.93534 0.92317 1.50788 0.92150 1.18869 0.94202 0.91980 0.94968 1.22126 0.95385 0.88921 0.99172 1.64774 1.29659 1.01995 1.29517 1.23215 0.99325 0.96783 0.89994 1.22666 0.97523 0.93157 1.01603 1.22702 0.99698 0.94552 0.97299 0.87264 1.23165 0.91585 0.88087 0.93835 0.83776 1.86715 1.25888 1.85173 1.36520 1.21755 0.76297 0.85626 0.79429 1.93201 1.53963 1.89838 1.79050 1.93195 1.92073 1.60902 1.70513 1.93170 1.61283 1.91145 1.70837 1.22795 0.94859 0.89104 1.01103 0.92768 0.99064 0.98990 0.95633 0.91953 0.94030 0.91785 0.89781 0.88881 0.74912 0.92955 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.08 5.46 84.66 0.46 0.54 16 3 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.54 -31.20 9.11 25.60 0.23 -30.96 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.04 2.00 5.06 29.85 0.15 2.16 16 10 C 0.07 3.01 4.64 86.30 0.40 3.41 16 11 N -0.54 -18.60 5.24 -883.00 -4.63 -23.23 16 12 C 0.03 1.08 5.91 86.65 0.51 1.60 16 13 C -0.11 -2.46 4.92 31.80 0.16 -2.31 16 14 C -0.12 -2.32 2.64 -9.91 -0.03 -2.35 16 15 H 0.11 1.65 7.79 -2.38 -0.02 1.63 16 16 C 0.10 1.59 2.35 30.60 0.07 1.66 16 17 H 0.14 2.53 8.11 -2.39 -0.02 2.52 16 18 O -0.54 -8.37 12.71 -148.98 -1.89 -10.26 16 19 C 0.42 7.32 2.84 71.98 0.20 7.53 16 20 F -0.18 -3.41 14.46 44.97 0.65 -2.76 16 21 F -0.19 -3.66 17.26 44.97 0.78 -2.89 16 22 F -0.18 -3.01 16.41 44.97 0.74 -2.27 16 23 C 0.05 1.24 6.11 86.45 0.53 1.77 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H -0.01 -0.48 7.37 -2.39 -0.02 -0.50 16 27 H 0.03 1.04 7.83 -2.39 -0.02 1.03 16 28 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 29 H 0.04 1.30 7.81 -2.38 -0.02 1.28 16 30 H 0.06 2.28 7.80 -2.38 -0.02 2.26 16 31 H 0.08 1.85 7.04 -2.39 -0.02 1.84 16 32 H 0.09 1.75 7.96 -2.39 -0.02 1.73 16 33 H 0.40 3.36 8.69 -74.06 -0.64 2.71 16 34 H 0.05 1.28 7.77 -2.39 -0.02 1.26 16 35 H 0.09 2.19 7.41 -2.39 -0.02 2.18 16 Total: -1.00 -66.61 297.13 1.11 -65.50 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 0.46 Total: 3.50 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 2.69 Total: -16.95 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -4.35 Total: -80.15 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.89 Total: -10.26 kcal Atomic # 9 Polarization: -10.08 SS G_CDS: 2.16 Total: -7.92 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.61 1.11 -65.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595521271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.084 kcal (2) G-P(sol) polarization free energy of solvation -66.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds