Wall clock time and date at job start Mon Mar 30 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50547 * 2 1 4 4 C 1.53104 * 109.50695 * 239.87572 * 2 1 3 5 5 H 1.09002 * 109.50587 * 176.97618 * 4 2 1 6 6 C 1.52998 * 109.50660 * 56.84678 * 4 2 1 7 7 F 1.39899 * 109.47525 * 54.19890 * 6 4 2 8 8 F 1.39899 * 109.46899 * 174.20377 * 6 4 2 9 9 F 1.39899 * 109.47178 * 294.20050 * 6 4 2 10 10 O 1.43014 * 109.25504 * 296.90926 * 4 2 1 11 11 C 1.43012 * 113.74242 * 301.33188 * 10 4 2 12 12 C 1.53100 * 109.25828 * 58.66774 * 11 10 4 13 13 N 1.47009 * 109.50946 * 120.09030 * 2 1 3 14 14 C 1.46901 * 111.00068 * 297.54205 * 13 2 1 15 15 C 1.52992 * 109.47227 * 189.99783 * 14 13 2 16 16 C 1.50706 * 109.47067 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00069 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00267 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99932 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47348 * 89.99794 * 20 18 16 22 22 H 1.48498 * 109.47333 * 209.99622 * 20 18 16 23 23 H 1.48497 * 109.47229 * 329.99865 * 20 18 16 24 24 H 1.08995 * 109.47488 * 291.89089 * 1 2 3 25 25 H 1.09001 * 109.46890 * 171.89406 * 1 2 3 26 26 H 1.08997 * 109.47541 * 51.89376 * 1 2 3 27 27 H 1.09005 * 109.50309 * 298.73706 * 11 10 4 28 28 H 1.09001 * 109.51027 * 178.60810 * 11 10 4 29 29 H 1.09000 * 109.50257 * 183.21753 * 12 11 10 30 30 H 1.09000 * 109.53823 * 63.11466 * 12 11 10 31 31 H 1.08994 * 109.46977 * 310.00351 * 14 13 2 32 32 H 1.09002 * 109.46760 * 70.00002 * 14 13 2 33 33 H 1.09004 * 109.47591 * 300.00106 * 15 14 13 34 34 H 1.09002 * 109.47072 * 60.00410 * 15 14 13 35 35 H 0.96998 * 120.00201 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7243 -1.2482 5 1 3.1299 -0.6776 -1.2758 6 6 1.4684 -0.0538 -2.4985 7 9 1.7623 1.3137 -2.4706 8 9 2.0378 -0.6301 -3.6390 9 9 0.0811 -0.2320 -2.5292 10 8 1.6227 -2.0911 -1.2050 11 6 2.0837 -2.7982 -0.0506 12 6 1.5730 -2.0949 1.2098 13 7 2.0209 -0.6947 1.1989 14 6 1.5990 0.0024 2.4212 15 6 2.3266 -0.5960 3.6267 16 6 1.8932 0.1188 4.8807 17 1 1.1708 0.9195 4.8235 18 6 2.4183 -0.2502 6.1010 19 7 2.0398 0.3732 7.1953 20 14 3.6673 -1.6357 6.1999 21 1 5.0367 -1.0787 6.0587 22 1 3.5443 -2.3204 7.5118 23 1 3.4140 -2.6094 5.1077 24 1 -0.3634 0.3831 0.9535 25 1 -0.3633 -1.0174 -0.1449 26 1 -0.3634 0.6342 -0.8086 27 1 3.1737 -2.8119 -0.0434 28 1 1.7065 -3.8206 -0.0751 29 1 1.9690 -2.5970 2.0925 30 1 0.4837 -2.1285 1.2299 31 1 1.8434 1.0614 2.3382 32 1 0.5230 -0.1130 2.5522 33 1 2.0821 -1.6551 3.7097 34 1 3.4025 -0.4806 3.4957 35 1 2.4095 0.1139 8.0538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595783004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:08 Heat of formation + Delta-G solvation = -189.469856 kcal Electronic energy + Delta-G solvation = -21810.691304 eV Core-core repulsion = 18008.081760 eV Total energy + Delta-G solvation = -3802.609544 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.27233 -47.76415 -47.72862 -40.12459 -36.35067 -33.40907 -32.59118 -30.60494 -28.35054 -27.80981 -24.93945 -23.67080 -23.07364 -20.57959 -19.35705 -18.72484 -18.52268 -17.95223 -16.94774 -16.27854 -15.94423 -15.29998 -14.77889 -14.64467 -14.53602 -14.37693 -14.16486 -14.09891 -13.85260 -13.83821 -13.63511 -13.08500 -12.78163 -12.60243 -12.07716 -11.62069 -11.57767 -11.47330 -11.33264 -10.94656 -10.64165 -10.25608 -10.04636 -9.82069 -9.64693 -9.28296 -8.59092 -8.10573 -6.10188 -4.09170 2.35034 3.17896 3.27329 3.34829 3.37122 3.53649 3.84883 4.18510 4.37942 4.39963 4.52078 4.78189 4.97726 5.06743 5.23134 5.24114 5.30888 5.40288 5.66220 5.71041 5.86614 5.92251 6.09191 6.12225 6.31616 6.63585 6.68758 6.94578 7.09042 7.37001 7.42793 7.74670 8.45823 8.93410 9.51628 11.03095 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.004839 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.948290 B = 5784.623747 C = 6111.899170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.049 3.951 3 H 0.103 0.897 4 C 0.056 3.944 5 H 0.109 0.891 6 C 0.467 3.533 7 F -0.174 7.174 8 F -0.179 7.179 9 F -0.171 7.171 10 O -0.368 6.368 11 C 0.068 3.932 12 C 0.008 3.992 13 N -0.529 5.529 14 C 0.070 3.930 15 C -0.006 4.006 16 C -0.523 4.523 17 H 0.071 0.929 18 C 0.069 3.931 19 N -0.902 5.902 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.016 0.984 34 H 0.021 0.979 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -3.951 -18.853 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.061 4.061 3 H 0.121 0.879 4 C -0.004 4.004 5 H 0.126 0.874 6 C 0.412 3.588 7 F -0.156 7.156 8 F -0.160 7.160 9 F -0.152 7.152 10 O -0.287 6.287 11 C -0.009 4.009 12 C -0.120 4.120 13 N -0.253 5.253 14 C -0.056 4.056 15 C -0.044 4.044 16 C -0.562 4.562 17 H 0.089 0.911 18 C -0.133 4.133 19 N -0.541 5.541 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.191 1.191 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.032 -4.017 -18.828 19.252 hybrid contribution -0.167 -0.442 0.294 0.556 sum -0.135 -4.459 -18.534 19.064 Atomic orbital electron populations 1.22687 0.95912 1.03464 1.03479 1.22268 0.94743 0.99003 0.90079 0.87925 1.23149 1.00684 0.85195 0.91361 0.87367 1.20130 0.76528 0.76912 0.85212 1.93203 1.93209 1.32497 1.96645 1.93196 1.84641 1.84345 1.53823 1.93177 1.30523 1.94961 1.96576 1.87934 1.76126 1.19858 1.44750 1.22851 0.99584 0.95186 0.83237 1.22882 0.99426 0.90483 0.99219 1.62556 1.58878 1.01755 1.02160 1.22209 0.97916 0.97889 0.87557 1.19575 0.96143 0.96214 0.92477 1.21044 1.26060 1.19267 0.89820 0.91082 1.24992 0.96340 0.96337 0.95614 1.69907 1.44042 1.41678 0.98445 0.86747 0.82071 0.82896 0.77341 1.20211 1.21451 1.19078 0.91182 0.91335 0.91314 0.91642 0.87615 0.88326 0.93300 0.91086 0.94662 0.96625 0.96084 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.62 7.15 37.16 0.27 -2.36 16 2 C 0.05 0.66 2.31 -67.60 -0.16 0.50 16 3 H 0.10 1.35 7.73 -51.93 -0.40 0.94 16 4 C 0.06 0.69 2.60 -26.68 -0.07 0.62 16 5 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 6 C 0.47 5.59 2.69 37.16 0.10 5.69 16 7 F -0.17 -2.04 16.64 2.25 0.04 -2.00 16 8 F -0.18 -2.18 17.31 2.25 0.04 -2.14 16 9 F -0.17 -2.18 13.99 2.25 0.03 -2.15 16 10 O -0.37 -4.73 9.64 -35.23 -0.34 -5.07 16 11 C 0.07 0.79 7.01 37.21 0.26 1.05 16 12 C 0.01 0.11 5.05 -3.71 -0.02 0.10 16 13 N -0.53 -8.33 4.68 -226.35 -1.06 -9.39 16 14 C 0.07 1.33 4.28 -3.83 -0.02 1.31 16 15 C -0.01 -0.15 3.98 -27.88 -0.11 -0.26 16 16 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 17 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 20 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 24 H 0.07 0.99 6.31 -51.93 -0.33 0.66 16 25 H 0.07 0.94 6.30 -51.93 -0.33 0.61 16 26 H 0.07 0.85 6.11 -51.93 -0.32 0.53 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.10 1.49 6.38 -51.93 -0.33 1.16 16 30 H 0.05 0.70 6.58 -51.93 -0.34 0.36 16 31 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 32 H 0.04 0.68 6.72 -51.93 -0.35 0.33 16 33 H 0.02 0.35 5.57 -51.93 -0.29 0.06 16 34 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 282.67 15.07 4.26 4.26 Total: -1.00 -29.57 282.67 -5.45 -35.02 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -4.35 Total: -2.22 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: -0.17 Total: -6.30 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.29 Total: -35.99 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.34 Total: -5.07 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.57 -5.45 -35.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595783004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.446 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds