Wall clock time and date at job start Mon Mar 30 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.50547 * 2 1 4 4 C 1.53104 * 109.50695 * 239.87572 * 2 1 3 5 5 H 1.09002 * 109.50587 * 176.97618 * 4 2 1 6 6 C 1.52998 * 109.50660 * 56.84678 * 4 2 1 7 7 F 1.39899 * 109.47525 * 54.19890 * 6 4 2 8 8 F 1.39899 * 109.46899 * 174.20377 * 6 4 2 9 9 F 1.39899 * 109.47178 * 294.20050 * 6 4 2 10 10 O 1.43014 * 109.25504 * 296.90926 * 4 2 1 11 11 C 1.43012 * 113.74242 * 301.33188 * 10 4 2 12 12 C 1.53100 * 109.25828 * 58.66774 * 11 10 4 13 13 N 1.47009 * 109.50946 * 120.09030 * 2 1 3 14 14 C 1.46901 * 111.00068 * 297.54205 * 13 2 1 15 15 C 1.52992 * 109.47227 * 189.99783 * 14 13 2 16 16 C 1.50706 * 109.47067 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00069 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00267 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99932 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47348 * 89.99794 * 20 18 16 22 22 H 1.48498 * 109.47333 * 209.99622 * 20 18 16 23 23 H 1.48497 * 109.47229 * 329.99865 * 20 18 16 24 24 H 1.08995 * 109.47488 * 291.89089 * 1 2 3 25 25 H 1.09001 * 109.46890 * 171.89406 * 1 2 3 26 26 H 1.08997 * 109.47541 * 51.89376 * 1 2 3 27 27 H 1.09005 * 109.50309 * 298.73706 * 11 10 4 28 28 H 1.09001 * 109.51027 * 178.60810 * 11 10 4 29 29 H 1.09000 * 109.50257 * 183.21753 * 12 11 10 30 30 H 1.09000 * 109.53823 * 63.11466 * 12 11 10 31 31 H 1.08994 * 109.46977 * 310.00351 * 14 13 2 32 32 H 1.09002 * 109.46760 * 70.00002 * 14 13 2 33 33 H 1.09004 * 109.47591 * 300.00106 * 15 14 13 34 34 H 1.09002 * 109.47072 * 60.00410 * 15 14 13 35 35 H 0.96998 * 120.00201 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7243 -1.2482 5 1 3.1299 -0.6776 -1.2758 6 6 1.4684 -0.0538 -2.4985 7 9 1.7623 1.3137 -2.4706 8 9 2.0378 -0.6301 -3.6390 9 9 0.0811 -0.2320 -2.5292 10 8 1.6227 -2.0911 -1.2050 11 6 2.0837 -2.7982 -0.0506 12 6 1.5730 -2.0949 1.2098 13 7 2.0209 -0.6947 1.1989 14 6 1.5990 0.0024 2.4212 15 6 2.3266 -0.5960 3.6267 16 6 1.8932 0.1188 4.8807 17 1 1.1708 0.9195 4.8235 18 6 2.4183 -0.2502 6.1010 19 7 2.0398 0.3732 7.1953 20 14 3.6673 -1.6357 6.1999 21 1 5.0367 -1.0787 6.0587 22 1 3.5443 -2.3204 7.5118 23 1 3.4140 -2.6094 5.1077 24 1 -0.3634 0.3831 0.9535 25 1 -0.3633 -1.0174 -0.1449 26 1 -0.3634 0.6342 -0.8086 27 1 3.1737 -2.8119 -0.0434 28 1 1.7065 -3.8206 -0.0751 29 1 1.9690 -2.5970 2.0925 30 1 0.4837 -2.1285 1.2299 31 1 1.8434 1.0614 2.3382 32 1 0.5230 -0.1130 2.5522 33 1 2.0821 -1.6551 3.7097 34 1 3.4025 -0.4806 3.4957 35 1 2.4095 0.1139 8.0538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595783004.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:08 Heat of formation + Delta-G solvation = -209.699695 kcal Electronic energy + Delta-G solvation = -21811.568535 eV Core-core repulsion = 18008.081760 eV Total energy + Delta-G solvation = -3803.486776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.22160 -48.70121 -48.69227 -41.20722 -37.57622 -35.19323 -33.93185 -32.27729 -29.37345 -29.19066 -26.40967 -24.84201 -24.30576 -22.16881 -20.52326 -19.69490 -19.53255 -19.08730 -18.77062 -17.37522 -17.02860 -16.63900 -16.02530 -15.90963 -15.67994 -15.56048 -15.30052 -15.11035 -14.98888 -14.88630 -14.79811 -14.59909 -14.42964 -13.87953 -13.47113 -13.00634 -12.91445 -12.62607 -12.54380 -12.46302 -11.97054 -11.87396 -11.66269 -11.46029 -11.34590 -10.83936 -10.74293 -9.38192 -8.29153 -6.33879 1.38642 1.39326 1.40145 1.51312 2.21263 2.37088 2.49996 2.88751 3.06647 3.07342 3.43048 3.51282 3.78955 3.91885 4.00132 4.22321 4.28925 4.33266 4.48198 4.60174 4.60630 4.73528 4.84354 4.90043 4.97129 5.16734 5.26862 5.44806 5.61916 5.73208 5.95735 6.00453 6.28070 6.74212 7.31058 8.87573 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.004839 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.948290 B = 5784.623747 C = 6111.899170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.047 3.953 3 H 0.107 0.893 4 C 0.060 3.940 5 H 0.125 0.875 6 C 0.471 3.529 7 F -0.172 7.172 8 F -0.178 7.178 9 F -0.176 7.176 10 O -0.375 6.375 11 C 0.072 3.928 12 C 0.004 3.996 13 N -0.530 5.530 14 C 0.084 3.916 15 C 0.001 3.999 16 C -0.533 4.533 17 H 0.031 0.969 18 C 0.006 3.994 19 N -0.952 5.952 20 Si 0.953 3.047 21 H -0.268 1.268 22 H -0.287 1.287 23 H -0.242 1.242 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 -5.635 -20.559 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.062 4.062 3 H 0.125 0.875 4 C 0.000 4.000 5 H 0.142 0.858 6 C 0.416 3.584 7 F -0.154 7.154 8 F -0.159 7.159 9 F -0.157 7.157 10 O -0.294 6.294 11 C -0.003 4.003 12 C -0.124 4.124 13 N -0.255 5.255 14 C -0.043 4.043 15 C -0.037 4.037 16 C -0.572 4.572 17 H 0.049 0.951 18 C -0.191 4.191 19 N -0.592 5.592 20 Si 0.776 3.224 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.166 1.166 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.220 -5.703 -20.569 21.380 hybrid contribution -0.615 0.160 0.808 1.028 sum 0.605 -5.544 -19.762 20.533 Atomic orbital electron populations 1.22616 0.95872 1.03362 1.03026 1.22327 0.94792 0.99327 0.89786 0.87537 1.23145 1.01507 0.84879 0.90451 0.85762 1.20057 0.76231 0.76929 0.85139 1.93211 1.93160 1.32382 1.96633 1.93198 1.84604 1.84364 1.53781 1.93168 1.30995 1.94995 1.96590 1.87941 1.76404 1.19945 1.45074 1.22961 1.00292 0.95776 0.81321 1.22971 0.99282 0.89567 1.00571 1.62448 1.59029 1.02506 1.01472 1.21855 0.96846 0.97615 0.88034 1.19441 0.96384 0.96097 0.91787 1.21402 1.25014 1.18530 0.92225 0.95085 1.25986 0.98706 0.99316 0.95060 1.70067 1.45996 1.43921 0.99266 0.85626 0.79101 0.79665 0.78029 1.19332 1.21257 1.16556 0.92580 0.91612 0.90388 0.90521 0.85008 0.89093 0.93769 0.91734 0.95535 0.95829 0.95860 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.85 7.15 71.98 0.51 -4.34 16 2 C 0.05 1.18 2.31 44.93 0.10 1.29 16 3 H 0.11 2.62 7.73 -2.39 -0.02 2.60 16 4 C 0.06 1.32 2.60 30.63 0.08 1.40 16 5 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 6 C 0.47 10.22 2.69 71.98 0.19 10.41 16 7 F -0.17 -3.68 16.64 44.97 0.75 -2.94 16 8 F -0.18 -3.92 17.31 44.97 0.78 -3.15 16 9 F -0.18 -4.14 13.99 44.97 0.63 -3.51 16 10 O -0.37 -8.50 9.64 -148.98 -1.44 -9.93 16 11 C 0.07 1.44 7.01 72.02 0.50 1.94 16 12 C 0.00 0.10 5.05 86.32 0.44 0.54 16 13 N -0.53 -15.79 4.68 -870.03 -4.07 -19.85 16 14 C 0.08 3.13 4.28 86.30 0.37 3.50 16 15 C 0.00 0.03 3.98 29.85 0.12 0.15 16 16 C -0.53 -30.08 9.66 25.60 0.25 -29.83 16 17 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 18 C 0.01 0.35 5.47 84.66 0.46 0.82 16 19 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 20 Si 0.95 43.20 27.47 68.60 1.88 45.09 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 24 H 0.06 1.58 6.31 -2.39 -0.02 1.56 16 25 H 0.06 1.71 6.30 -2.39 -0.02 1.69 16 26 H 0.08 1.83 6.11 -2.39 -0.01 1.82 16 27 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 2.53 6.38 -2.39 -0.02 2.52 16 30 H 0.04 1.20 6.58 -2.39 -0.02 1.19 16 31 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 32 H 0.03 1.03 6.72 -2.39 -0.02 1.01 16 33 H 0.02 1.02 5.57 -2.39 -0.01 1.01 16 34 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -63.63 282.67 2.92 -60.71 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.05 Total: 6.56 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 3.03 Total: -14.13 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -3.77 Total: -78.70 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -1.44 Total: -9.93 kcal Atomic # 9 Polarization: -11.75 SS G_CDS: 2.16 Total: -9.59 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.09 kcal Total: -63.63 2.92 -60.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595783004.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.985 kcal (2) G-P(sol) polarization free energy of solvation -63.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds