Wall clock time and date at job start Mon Mar 30 2020 04:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99895 * 2 1 4 4 H 1.48503 * 109.46660 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47020 * 299.99433 * 3 2 1 6 6 H 1.48496 * 109.47419 * 60.00032 * 3 2 1 7 7 C 1.37873 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00472 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47419 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47292 * 179.97438 * 10 9 7 12 12 C 1.47018 * 110.99928 * 66.04577 * 11 10 9 13 13 C 1.53095 * 109.29409 * 177.62963 * 12 11 10 14 14 O 1.43016 * 109.25799 * 56.82300 * 13 12 11 15 15 C 1.43015 * 113.74083 * 301.33083 * 14 13 12 16 16 H 1.08993 * 109.50392 * 298.68643 * 15 14 13 17 17 C 1.53003 * 109.50687 * 178.60307 * 15 14 13 18 18 C 1.52999 * 109.46920 * 64.99991 * 17 15 14 19 19 F 1.39893 * 109.47310 * 60.00127 * 18 17 15 20 20 F 1.39902 * 109.47357 * 179.97438 * 18 17 15 21 21 F 1.39906 * 109.47434 * 299.99956 * 18 17 15 22 22 C 1.47014 * 111.03763 * 302.38390 * 11 10 9 23 23 H 0.97003 * 119.99395 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47311 * 59.99186 * 9 7 2 25 25 H 1.09005 * 109.46872 * 299.99671 * 9 7 2 26 26 H 1.08999 * 109.47582 * 59.99306 * 10 9 7 27 27 H 1.09004 * 109.47316 * 299.99707 * 10 9 7 28 28 H 1.09002 * 109.50864 * 57.67198 * 12 11 10 29 29 H 1.09003 * 109.50425 * 297.58837 * 12 11 10 30 30 H 1.08994 * 109.50879 * 176.75852 * 13 12 11 31 31 H 1.09001 * 109.51139 * 296.84757 * 13 12 11 32 32 H 1.08993 * 109.47014 * 184.99828 * 17 15 14 33 33 H 1.08999 * 109.47288 * 305.00365 * 17 15 14 34 34 H 1.09006 * 109.46615 * 62.41273 * 22 11 10 35 35 H 1.08996 * 109.54154 * 302.33367 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 7 1.5107 -4.9342 0.0024 12 6 0.7652 -5.1128 -1.2521 13 6 0.0638 -6.4735 -1.2344 14 8 -0.7836 -6.5525 -0.0850 15 6 -0.0899 -6.3846 1.1543 16 1 0.6510 -7.1759 1.2668 17 6 -1.0884 -6.4513 2.3117 18 6 -1.7002 -7.8522 2.3773 19 9 -0.6866 -8.7946 2.5809 20 9 -2.6128 -7.9135 3.4359 21 9 -2.3603 -8.1296 1.1753 22 6 0.6099 -5.0229 1.1609 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8713 -3.6039 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 1.4553 -5.0699 -2.0948 29 1 0.0220 -4.3214 -1.3496 30 1 -0.5362 -6.5854 -2.1374 31 1 0.8099 -7.2671 -1.1925 32 1 -0.5742 -6.2353 3.2481 33 1 -1.8782 -5.7171 2.1531 34 1 -0.1359 -4.2301 1.1027 35 1 1.1859 -4.9141 2.0798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595888266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:51 Heat of formation + Delta-G solvation = -207.452243 kcal Electronic energy + Delta-G solvation = -21271.975595 eV Core-core repulsion = 17468.586276 eV Total energy + Delta-G solvation = -3803.389319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.03956 -47.59746 -47.44087 -39.55191 -36.01751 -33.49240 -32.94079 -29.95897 -29.06643 -26.60178 -24.09720 -23.78547 -22.31746 -21.29733 -19.45483 -18.49628 -18.33747 -17.31511 -16.57003 -16.33632 -15.73439 -14.83076 -14.63536 -14.60363 -14.40590 -14.28408 -13.97557 -13.94883 -13.65969 -13.63315 -13.19212 -13.00864 -12.63165 -12.27284 -12.16812 -11.71375 -11.35144 -11.31916 -11.02831 -10.88970 -10.81157 -10.42188 -9.96590 -9.81789 -9.44825 -9.20588 -8.43474 -7.69491 -6.09354 -4.12756 2.77612 3.25119 3.33111 3.36889 3.59862 3.77517 4.00992 4.18130 4.35852 4.45111 4.92860 5.01756 5.12381 5.23954 5.26494 5.33296 5.47128 5.53141 5.66724 5.76666 6.05398 6.11022 6.22895 6.27980 6.54343 6.78227 7.19110 7.33477 7.34481 7.56947 7.69489 7.89898 8.32004 8.94335 9.52274 11.01736 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.004304 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.270744 B = 6504.768125 C = 6876.252083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.057 0.943 9 C -0.010 4.010 10 C 0.057 3.943 11 N -0.540 5.540 12 C 0.012 3.988 13 C 0.068 3.932 14 O -0.377 6.377 15 C 0.092 3.908 16 H 0.075 0.925 17 C -0.161 4.161 18 C 0.455 3.545 19 F -0.187 7.187 20 F -0.190 7.190 21 F -0.171 7.171 22 C 0.024 3.976 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.061 0.939 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -15.053 3.073 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.048 4.048 10 C -0.070 4.070 11 N -0.263 5.263 12 C -0.116 4.116 13 C -0.008 4.008 14 O -0.296 6.296 15 C 0.033 3.967 16 H 0.093 0.907 17 C -0.199 4.199 18 C 0.401 3.599 19 F -0.169 7.169 20 F -0.171 7.171 21 F -0.152 7.152 22 C -0.104 4.104 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.038 -15.390 3.092 15.829 hybrid contribution -0.010 1.593 -0.051 1.594 sum -2.048 -13.797 3.041 14.276 Atomic orbital electron populations 1.69974 1.06116 1.26630 1.50627 1.25025 0.94835 0.99365 0.95113 0.86527 0.80142 0.83663 0.77640 1.19656 1.20971 1.20969 1.21174 0.93071 0.90835 1.50900 0.92494 1.19673 0.94951 0.92807 0.97377 1.22356 0.96826 0.86429 1.01385 1.62605 1.26123 1.36326 1.01293 1.22771 0.97885 0.97330 0.93615 1.22667 0.93623 0.96413 0.88139 1.88007 1.34805 1.93214 1.13587 1.22024 0.92349 0.98521 0.83775 0.90699 1.22938 1.02528 0.92419 1.02058 1.20466 0.76457 0.89358 0.73608 1.93163 1.60223 1.68667 1.94842 1.93175 1.68799 1.97046 1.58097 1.93238 1.81556 1.94809 1.45615 1.22657 0.96482 0.95597 0.95688 0.92979 0.96440 0.96304 0.91690 0.91709 0.90011 0.92706 0.88607 0.92719 0.85846 0.86232 0.92126 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C -0.01 -0.25 4.26 -27.89 -0.12 -0.37 16 10 C 0.06 1.13 5.32 -3.83 -0.02 1.11 16 11 N -0.54 -9.26 4.94 -234.31 -1.16 -10.41 16 12 C 0.01 0.20 5.33 -3.71 -0.02 0.18 16 13 C 0.07 0.93 7.01 37.21 0.26 1.19 16 14 O -0.38 -5.66 8.94 -35.23 -0.31 -5.97 16 15 C 0.09 1.24 2.74 -26.68 -0.07 1.16 16 16 H 0.08 0.98 7.67 -51.93 -0.40 0.58 16 17 C -0.16 -1.79 5.04 -26.73 -0.13 -1.92 16 18 C 0.46 5.44 3.16 37.16 0.12 5.56 16 19 F -0.19 -2.30 16.71 2.25 0.04 -2.26 16 20 F -0.19 -2.26 17.32 2.25 0.04 -2.22 16 21 F -0.17 -2.35 15.75 2.25 0.04 -2.32 16 22 C 0.02 0.38 4.42 -3.71 -0.02 0.37 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.46 6.61 -51.93 -0.34 0.12 16 25 H 0.02 0.49 6.42 -51.93 -0.33 0.16 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.28 8.11 -51.93 -0.42 0.86 16 28 H 0.08 1.22 8.12 -51.93 -0.42 0.80 16 29 H 0.05 1.02 6.59 -51.93 -0.34 0.68 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.11 6.40 -51.93 -0.33 0.78 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 294.46 15.07 4.44 4.44 Total: -1.00 -30.02 294.46 -6.29 -36.32 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.67 Total: -2.34 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.42 Total: -5.80 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.42 Total: -36.05 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.31 Total: -5.97 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 0.11 Total: -6.80 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.02 -6.29 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595888266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.136 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds