Wall clock time and date at job start Mon Mar 30 2020 04:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99895 * 2 1 4 4 H 1.48503 * 109.46660 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47020 * 299.99433 * 3 2 1 6 6 H 1.48496 * 109.47419 * 60.00032 * 3 2 1 7 7 C 1.37873 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00472 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47419 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47292 * 179.97438 * 10 9 7 12 12 C 1.47018 * 110.99928 * 66.04577 * 11 10 9 13 13 C 1.53095 * 109.29409 * 177.62963 * 12 11 10 14 14 O 1.43016 * 109.25799 * 56.82300 * 13 12 11 15 15 C 1.43015 * 113.74083 * 301.33083 * 14 13 12 16 16 H 1.08993 * 109.50392 * 298.68643 * 15 14 13 17 17 C 1.53003 * 109.50687 * 178.60307 * 15 14 13 18 18 C 1.52999 * 109.46920 * 64.99991 * 17 15 14 19 19 F 1.39893 * 109.47310 * 60.00127 * 18 17 15 20 20 F 1.39902 * 109.47357 * 179.97438 * 18 17 15 21 21 F 1.39906 * 109.47434 * 299.99956 * 18 17 15 22 22 C 1.47014 * 111.03763 * 302.38390 * 11 10 9 23 23 H 0.97003 * 119.99395 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47311 * 59.99186 * 9 7 2 25 25 H 1.09005 * 109.46872 * 299.99671 * 9 7 2 26 26 H 1.08999 * 109.47582 * 59.99306 * 10 9 7 27 27 H 1.09004 * 109.47316 * 299.99707 * 10 9 7 28 28 H 1.09002 * 109.50864 * 57.67198 * 12 11 10 29 29 H 1.09003 * 109.50425 * 297.58837 * 12 11 10 30 30 H 1.08994 * 109.50879 * 176.75852 * 13 12 11 31 31 H 1.09001 * 109.51139 * 296.84757 * 13 12 11 32 32 H 1.08993 * 109.47014 * 184.99828 * 17 15 14 33 33 H 1.08999 * 109.47288 * 305.00365 * 17 15 14 34 34 H 1.09006 * 109.46615 * 62.41273 * 22 11 10 35 35 H 1.08996 * 109.54154 * 302.33367 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0018 11 7 1.5107 -4.9342 0.0024 12 6 0.7652 -5.1128 -1.2521 13 6 0.0638 -6.4735 -1.2344 14 8 -0.7836 -6.5525 -0.0850 15 6 -0.0899 -6.3846 1.1543 16 1 0.6510 -7.1759 1.2668 17 6 -1.0884 -6.4513 2.3117 18 6 -1.7002 -7.8522 2.3773 19 9 -0.6866 -8.7946 2.5809 20 9 -2.6128 -7.9135 3.4359 21 9 -2.3603 -8.1296 1.1753 22 6 0.6099 -5.0229 1.1609 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8713 -3.6039 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 1.4553 -5.0699 -2.0948 29 1 0.0220 -4.3214 -1.3496 30 1 -0.5362 -6.5854 -2.1374 31 1 0.8099 -7.2671 -1.1925 32 1 -0.5742 -6.2353 3.2481 33 1 -1.8782 -5.7171 2.1531 34 1 -0.1359 -4.2301 1.1027 35 1 1.1859 -4.9141 2.0798 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595888266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:51 Heat of formation + Delta-G solvation = -227.207533 kcal Electronic energy + Delta-G solvation = -21272.832249 eV Core-core repulsion = 17468.586276 eV Total energy + Delta-G solvation = -3804.245972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.00769 -48.54731 -48.44223 -40.79522 -37.45693 -34.96726 -34.53799 -31.68781 -30.28087 -28.16222 -25.65248 -25.09148 -23.68669 -22.61023 -20.87053 -19.46830 -19.33869 -18.60755 -18.32408 -17.47550 -17.02810 -16.57359 -16.13487 -15.77430 -15.45044 -15.38773 -15.29448 -14.92733 -14.73237 -14.64389 -14.62721 -14.55086 -14.19379 -13.58281 -13.31837 -13.20372 -12.91986 -12.78092 -12.59375 -12.49651 -12.20104 -11.98677 -11.65529 -11.54186 -11.19032 -10.64686 -10.57319 -9.23161 -8.23305 -6.35191 1.38349 1.39340 1.52198 1.82026 2.38176 2.57325 2.74586 2.98234 3.10099 3.19965 3.23714 3.88629 3.89956 4.02568 4.09127 4.25306 4.35144 4.37233 4.55713 4.58573 4.64476 4.74726 4.89552 4.90220 4.94346 5.10040 5.45273 5.52207 5.69334 5.93656 6.04809 6.13746 6.27272 6.82684 7.34867 8.87931 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.004304 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.270744 B = 6504.768125 C = 6876.252083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.000 4.000 10 C 0.071 3.929 11 N -0.532 5.532 12 C 0.012 3.988 13 C 0.072 3.928 14 O -0.392 6.392 15 C 0.097 3.903 16 H 0.087 0.913 17 C -0.157 4.157 18 C 0.459 3.541 19 F -0.187 7.187 20 F -0.189 7.189 21 F -0.183 7.183 22 C 0.025 3.975 23 H 0.263 0.737 24 H -0.012 1.012 25 H -0.003 1.003 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.020 0.980 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.118 0.882 34 H 0.028 0.972 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -15.650 3.464 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.038 4.038 10 C -0.057 4.057 11 N -0.255 5.255 12 C -0.117 4.117 13 C -0.005 4.005 14 O -0.311 6.311 15 C 0.038 3.962 16 H 0.105 0.895 17 C -0.195 4.195 18 C 0.405 3.595 19 F -0.169 7.169 20 F -0.170 7.170 21 F -0.164 7.164 22 C -0.104 4.104 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.015 0.985 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.038 0.962 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.170 0.830 33 H 0.136 0.864 34 H 0.047 0.953 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.876 -16.009 3.484 16.407 hybrid contribution -0.397 1.748 -0.176 1.801 sum -1.273 -14.261 3.308 14.695 Atomic orbital electron populations 1.70110 1.07880 1.27680 1.51726 1.25955 0.95670 1.03353 0.94634 0.85415 0.79239 0.78822 0.77684 1.18347 1.20608 1.20454 1.21645 0.93642 0.92147 1.50468 0.91878 1.19531 0.95169 0.94244 0.94867 1.22113 0.95845 0.85895 1.01819 1.62647 1.26602 1.33933 1.02297 1.22843 0.97332 0.97945 0.93533 1.22760 0.94075 0.94976 0.88640 1.88007 1.35720 1.93063 1.14348 1.22052 0.93021 0.97042 0.84048 0.89475 1.22974 1.02247 0.91903 1.02407 1.20483 0.76327 0.89501 0.73164 1.93163 1.60154 1.68761 1.94803 1.93177 1.68818 1.97047 1.57971 1.93216 1.81861 1.94923 1.46431 1.22709 0.95766 0.96221 0.95702 0.92849 0.99360 0.98512 0.91023 0.91366 0.88921 0.96192 0.86697 0.90921 0.83044 0.86387 0.95329 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -29.92 9.11 25.60 0.23 -29.68 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.00 0.01 4.26 29.84 0.13 0.14 16 10 C 0.07 2.81 5.32 86.30 0.46 3.27 16 11 N -0.53 -17.90 4.94 -895.22 -4.42 -22.31 16 12 C 0.01 0.38 5.33 86.31 0.46 0.84 16 13 C 0.07 1.85 7.01 72.01 0.50 2.36 16 14 O -0.39 -11.32 8.94 -148.98 -1.33 -12.65 16 15 C 0.10 2.46 2.74 30.63 0.08 2.54 16 16 H 0.09 2.05 7.67 -2.39 -0.02 2.03 16 17 C -0.16 -3.24 5.04 30.60 0.15 -3.08 16 18 C 0.46 10.21 3.16 71.98 0.23 10.44 16 19 F -0.19 -4.19 16.71 44.97 0.75 -3.44 16 20 F -0.19 -4.20 17.32 44.97 0.78 -3.42 16 21 F -0.18 -4.82 15.75 44.97 0.71 -4.11 16 22 C 0.02 0.76 4.42 86.31 0.38 1.14 16 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 24 H -0.01 -0.67 6.61 -2.39 -0.02 -0.68 16 25 H 0.00 -0.19 6.42 -2.38 -0.02 -0.20 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.07 2.65 8.11 -2.38 -0.02 2.63 16 28 H 0.09 2.71 8.12 -2.39 -0.02 2.69 16 29 H 0.02 0.77 6.59 -2.39 -0.02 0.76 16 30 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.03 1.08 6.40 -2.38 -0.02 1.06 16 35 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -64.56 294.46 2.98 -61.58 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.09 Total: 6.26 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 3.09 Total: -11.48 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -4.13 Total: -78.23 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.33 Total: -12.65 kcal Atomic # 9 Polarization: -13.21 SS G_CDS: 2.24 Total: -10.97 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.56 2.98 -61.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595888266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.631 kcal (2) G-P(sol) polarization free energy of solvation -64.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds