Wall clock time and date at job start Mon Mar 30 2020 04:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99636 * 2 1 4 4 H 1.48504 * 109.47286 * 269.99869 * 3 2 1 5 5 H 1.48503 * 109.47431 * 29.99943 * 3 2 1 6 6 H 1.48498 * 109.46959 * 150.00101 * 3 2 1 7 7 C 1.37878 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99692 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46710 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46717 * 179.97438 * 10 9 7 12 12 C 1.47014 * 111.00085 * 46.36914 * 11 10 9 13 13 C 1.53096 * 109.25577 * 182.38996 * 12 11 10 14 14 O 1.43018 * 109.26016 * 303.14814 * 13 12 11 15 15 C 1.43016 * 113.73600 * 58.67305 * 14 13 12 16 16 H 1.08997 * 109.50587 * 61.26587 * 15 14 13 17 17 C 1.52999 * 109.50507 * 181.39466 * 15 14 13 18 18 C 1.53002 * 109.46897 * 294.78180 * 17 15 14 19 19 F 1.39898 * 109.47033 * 60.00429 * 18 17 15 20 20 F 1.39904 * 109.46864 * 179.97438 * 18 17 15 21 21 F 1.39901 * 109.47343 * 300.00062 * 18 17 15 22 22 C 1.47016 * 110.99529 * 170.00262 * 11 10 9 23 23 H 0.97001 * 119.99964 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47084 * 60.00283 * 9 7 2 25 25 H 1.08992 * 109.47008 * 299.99598 * 9 7 2 26 26 H 1.09008 * 109.46751 * 60.00155 * 10 9 7 27 27 H 1.08997 * 109.47199 * 300.00159 * 10 9 7 28 28 H 1.09004 * 109.50527 * 302.32353 * 12 11 10 29 29 H 1.09000 * 109.50818 * 62.41039 * 12 11 10 30 30 H 1.08995 * 109.50552 * 63.08831 * 13 12 11 31 31 H 1.09006 * 109.50337 * 183.21659 * 13 12 11 32 32 H 1.08997 * 109.47180 * 54.78466 * 17 15 14 33 33 H 1.09005 * 109.47106 * 174.78513 * 17 15 14 34 34 H 1.08999 * 109.50576 * 297.53813 * 22 11 10 35 35 H 1.09000 * 109.51010 * 57.67872 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 0.4271 -4.9173 -0.9919 13 6 -0.3476 -6.2356 -0.9162 14 8 0.5556 -7.3258 -1.1191 15 6 1.6235 -7.3731 -0.1691 16 1 1.2137 -7.4982 0.8332 17 6 2.5457 -8.5495 -0.4953 18 6 1.7837 -9.8627 -0.3059 19 9 0.6767 -9.8870 -1.1609 20 9 2.6269 -10.9383 -0.6048 21 9 1.3508 -9.9635 1.0206 22 6 2.4182 -6.0663 -0.2371 23 1 -0.4850 0.8401 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6243 -2.5567 0.8903 26 1 2.8722 -3.6041 0.8906 27 1 2.8722 -3.6042 -0.8894 28 1 -0.2466 -4.0866 -0.7812 29 1 0.8495 -4.7993 -1.9898 30 1 -0.8147 -6.3275 0.0643 31 1 -1.1161 -6.2510 -1.6891 32 1 2.8831 -8.4710 -1.5288 33 1 3.4083 -8.5306 0.1709 34 1 2.8724 -5.9675 -1.2230 35 1 3.1979 -6.0745 0.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595888268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:54 Heat of formation + Delta-G solvation = -205.666789 kcal Electronic energy + Delta-G solvation = -20996.167607 eV Core-core repulsion = 17192.855711 eV Total energy + Delta-G solvation = -3803.311896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.13210 -47.69244 -47.53194 -39.57594 -35.98163 -33.61803 -32.98761 -29.98483 -29.36317 -26.55368 -24.27626 -23.69166 -22.48760 -20.80074 -19.74018 -18.58552 -18.41855 -17.50029 -16.66266 -16.30615 -15.72711 -14.80123 -14.72609 -14.64078 -14.48719 -14.36189 -14.22923 -14.04566 -13.74632 -13.71670 -13.48303 -12.85271 -12.76660 -12.34206 -12.21719 -11.74200 -11.62546 -11.23222 -11.05976 -10.95490 -10.58072 -10.44320 -10.03539 -9.66801 -9.30106 -9.17441 -8.41113 -7.90915 -6.06749 -4.09483 2.66751 3.27970 3.34596 3.37557 3.50116 3.66799 3.89211 4.08086 4.28752 4.45046 4.81496 4.88706 4.99644 5.11305 5.28122 5.30501 5.36219 5.48397 5.58564 5.70152 5.86500 6.07479 6.21156 6.31340 6.35943 6.80529 7.14089 7.30439 7.42145 7.63752 7.75561 7.95355 8.34400 8.96730 9.54785 11.04617 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.052254 B = 0.003600 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.713295 B = 7775.198338 C = 8052.866187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.021 3.979 10 C 0.062 3.938 11 N -0.537 5.537 12 C 0.014 3.986 13 C 0.066 3.934 14 O -0.380 6.380 15 C 0.090 3.910 16 H 0.079 0.921 17 C -0.160 4.160 18 C 0.455 3.545 19 F -0.170 7.170 20 F -0.190 7.190 21 F -0.186 7.186 22 C 0.027 3.973 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.022 0.978 28 H 0.105 0.895 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.041 0.959 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.420 -18.246 -1.259 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.262 5.262 12 C -0.114 4.114 13 C -0.011 4.011 14 O -0.299 6.299 15 C 0.032 3.968 16 H 0.097 0.903 17 C -0.198 4.198 18 C 0.401 3.599 19 F -0.152 7.152 20 F -0.172 7.172 21 F -0.167 7.167 22 C -0.102 4.102 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.123 0.877 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.059 0.941 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.016 -18.343 -0.933 18.612 hybrid contribution 0.778 1.101 -0.592 1.473 sum 3.794 -17.242 -1.525 17.720 Atomic orbital electron populations 1.69958 1.06043 1.26735 1.50483 1.24991 0.94852 0.99255 0.95152 0.86574 0.79851 0.83356 0.78100 1.20678 1.21142 1.19848 1.21155 0.93015 0.90922 1.51145 0.92718 1.19237 0.94099 0.90474 0.97832 1.22371 0.97095 0.87688 0.99247 1.62351 1.11767 1.03746 1.48370 1.22885 0.95534 0.98880 0.94134 1.22757 0.91391 0.84959 1.01976 1.87988 1.38869 1.49646 1.53394 1.22005 0.88055 0.92845 0.93916 0.90302 1.22927 0.99364 0.89669 1.07857 1.20436 0.78689 0.86871 0.73912 1.93242 1.54878 1.96758 1.70283 1.93175 1.71239 1.59608 1.93144 1.93179 1.90599 1.96699 1.36229 1.22654 0.95639 0.91023 1.00836 0.92902 0.96161 0.95606 0.91644 0.95945 0.87732 0.94321 0.92259 0.88392 0.86523 0.85918 0.94091 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.52 4.24 -27.88 -0.12 0.40 16 10 C 0.06 1.27 5.22 -3.82 -0.02 1.25 16 11 N -0.54 -9.34 4.88 -234.30 -1.14 -10.49 16 12 C 0.01 0.23 4.94 -3.71 -0.02 0.21 16 13 C 0.07 0.92 7.01 37.21 0.26 1.18 16 14 O -0.38 -5.36 8.95 -35.23 -0.32 -5.67 16 15 C 0.09 1.11 2.74 -26.68 -0.07 1.03 16 16 H 0.08 1.00 7.66 -51.93 -0.40 0.60 16 17 C -0.16 -1.47 5.04 -26.73 -0.13 -1.61 16 18 C 0.46 4.91 3.16 37.16 0.12 5.02 16 19 F -0.17 -2.18 15.76 2.25 0.04 -2.14 16 20 F -0.19 -2.02 17.32 2.25 0.04 -1.98 16 21 F -0.19 -2.15 16.71 2.25 0.04 -2.11 16 22 C 0.03 0.37 4.91 -3.71 -0.02 0.36 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.53 6.28 -51.93 -0.33 0.20 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 27 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.10 1.95 6.05 -51.93 -0.31 1.64 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -30.01 296.98 -6.37 -36.39 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.80 Total: -3.81 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.42 Total: -5.38 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.41 Total: -36.01 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.32 Total: -5.67 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.01 -6.37 -36.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595888268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.281 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds