Wall clock time and date at job start Mon Mar 30 2020 04:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99636 * 2 1 4 4 H 1.48504 * 109.47286 * 269.99869 * 3 2 1 5 5 H 1.48503 * 109.47431 * 29.99943 * 3 2 1 6 6 H 1.48498 * 109.46959 * 150.00101 * 3 2 1 7 7 C 1.37878 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99692 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46710 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46717 * 179.97438 * 10 9 7 12 12 C 1.47014 * 111.00085 * 46.36914 * 11 10 9 13 13 C 1.53096 * 109.25577 * 182.38996 * 12 11 10 14 14 O 1.43018 * 109.26016 * 303.14814 * 13 12 11 15 15 C 1.43016 * 113.73600 * 58.67305 * 14 13 12 16 16 H 1.08997 * 109.50587 * 61.26587 * 15 14 13 17 17 C 1.52999 * 109.50507 * 181.39466 * 15 14 13 18 18 C 1.53002 * 109.46897 * 294.78180 * 17 15 14 19 19 F 1.39898 * 109.47033 * 60.00429 * 18 17 15 20 20 F 1.39904 * 109.46864 * 179.97438 * 18 17 15 21 21 F 1.39901 * 109.47343 * 300.00062 * 18 17 15 22 22 C 1.47016 * 110.99529 * 170.00262 * 11 10 9 23 23 H 0.97001 * 119.99964 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47084 * 60.00283 * 9 7 2 25 25 H 1.08992 * 109.47008 * 299.99598 * 9 7 2 26 26 H 1.09008 * 109.46751 * 60.00155 * 10 9 7 27 27 H 1.08997 * 109.47199 * 300.00159 * 10 9 7 28 28 H 1.09004 * 109.50527 * 302.32353 * 12 11 10 29 29 H 1.09000 * 109.50818 * 62.41039 * 12 11 10 30 30 H 1.08995 * 109.50552 * 63.08831 * 13 12 11 31 31 H 1.09006 * 109.50337 * 183.21659 * 13 12 11 32 32 H 1.08997 * 109.47180 * 54.78466 * 17 15 14 33 33 H 1.09005 * 109.47106 * 174.78513 * 17 15 14 34 34 H 1.08999 * 109.50576 * 297.53813 * 22 11 10 35 35 H 1.09000 * 109.51010 * 57.67872 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 0.4271 -4.9173 -0.9919 13 6 -0.3476 -6.2356 -0.9162 14 8 0.5556 -7.3258 -1.1191 15 6 1.6235 -7.3731 -0.1691 16 1 1.2137 -7.4982 0.8332 17 6 2.5457 -8.5495 -0.4953 18 6 1.7837 -9.8627 -0.3059 19 9 0.6767 -9.8870 -1.1609 20 9 2.6269 -10.9383 -0.6048 21 9 1.3508 -9.9635 1.0206 22 6 2.4182 -6.0663 -0.2371 23 1 -0.4850 0.8401 -0.0004 24 1 0.6249 -2.5571 -0.8897 25 1 0.6243 -2.5567 0.8903 26 1 2.8722 -3.6041 0.8906 27 1 2.8722 -3.6042 -0.8894 28 1 -0.2466 -4.0866 -0.7812 29 1 0.8495 -4.7993 -1.9898 30 1 -0.8147 -6.3275 0.0643 31 1 -1.1161 -6.2510 -1.6891 32 1 2.8831 -8.4710 -1.5288 33 1 3.4083 -8.5306 0.1709 34 1 2.8724 -5.9675 -1.2230 35 1 3.1979 -6.0745 0.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595888268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:54 Heat of formation + Delta-G solvation = -225.352977 kcal Electronic energy + Delta-G solvation = -20997.021264 eV Core-core repulsion = 17192.855711 eV Total energy + Delta-G solvation = -3804.165553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.99228 -48.53732 -48.43183 -40.75422 -37.39618 -35.02704 -34.53863 -31.78676 -30.45601 -28.05017 -25.77728 -25.00144 -23.66480 -22.08332 -21.21028 -19.45326 -19.29248 -18.73016 -18.27718 -17.39141 -17.06767 -16.57298 -16.13100 -15.77268 -15.63941 -15.37698 -15.30194 -14.92528 -14.90491 -14.63305 -14.61412 -14.39287 -14.12592 -13.60780 -13.31741 -13.27386 -12.86860 -12.76504 -12.63891 -12.37021 -12.29614 -11.94215 -11.59840 -11.32164 -11.24444 -10.62095 -10.54477 -9.31279 -8.21330 -6.32350 1.40773 1.41674 1.52812 1.84489 2.39410 2.55385 2.74813 2.97903 3.12669 3.19910 3.24013 3.86941 3.90207 4.02852 4.07224 4.18979 4.34772 4.39530 4.50953 4.59154 4.62244 4.67644 4.85624 4.90504 4.97926 5.02745 5.42853 5.61128 5.75340 5.97123 6.05403 6.16957 6.27169 6.84066 7.36975 8.90533 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.052254 B = 0.003600 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.713295 B = 7775.198338 C = 8052.866187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.029 3.971 10 C 0.078 3.922 11 N -0.547 5.547 12 C 0.017 3.983 13 C 0.074 3.926 14 O -0.386 6.386 15 C 0.089 3.911 16 H 0.076 0.924 17 C -0.150 4.150 18 C 0.454 3.546 19 F -0.185 7.185 20 F -0.188 7.188 21 F -0.192 7.192 22 C 0.027 3.973 23 H 0.264 0.736 24 H 0.001 0.999 25 H -0.005 1.005 26 H 0.070 0.930 27 H 0.023 0.977 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.155 0.845 34 H 0.045 0.955 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -18.876 -1.316 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.009 4.009 10 C -0.049 4.049 11 N -0.272 5.272 12 C -0.111 4.111 13 C -0.003 4.003 14 O -0.305 6.305 15 C 0.031 3.969 16 H 0.094 0.906 17 C -0.188 4.188 18 C 0.400 3.600 19 F -0.166 7.166 20 F -0.170 7.170 21 F -0.173 7.173 22 C -0.101 4.101 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.013 0.987 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.148 0.852 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.700 -18.999 -0.991 19.597 hybrid contribution 0.234 1.239 -0.564 1.381 sum 4.934 -17.760 -1.554 18.498 Atomic orbital electron populations 1.70093 1.07760 1.27803 1.51387 1.25931 0.95733 1.03245 0.94610 0.85453 0.78717 0.78465 0.78441 1.19859 1.20817 1.18665 1.21616 0.93572 0.92235 1.50955 0.92124 1.19061 0.94361 0.92088 0.95363 1.22021 0.95766 0.87643 0.99443 1.62283 1.12438 1.03592 1.48929 1.22802 0.95219 0.99612 0.93500 1.22699 0.91358 0.83483 1.02765 1.87998 1.39337 1.49151 1.54057 1.22106 0.87880 0.93306 0.93606 0.90616 1.22964 0.99143 0.87101 1.09612 1.20651 0.78375 0.87570 0.73378 1.93217 1.55804 1.96862 1.70735 1.93179 1.71029 1.59655 1.93099 1.93170 1.90718 1.96773 1.36666 1.22778 0.95581 0.89925 1.01798 0.92746 0.98072 0.98709 0.91186 0.95840 0.90637 0.95023 0.92205 0.86587 0.85195 0.82687 0.93666 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.47 4.24 29.85 0.13 1.60 16 10 C 0.08 3.17 5.22 86.30 0.45 3.62 16 11 N -0.55 -18.76 4.88 -895.18 -4.36 -23.12 16 12 C 0.02 0.58 4.94 86.31 0.43 1.00 16 13 C 0.07 2.02 7.01 72.01 0.50 2.52 16 14 O -0.39 -10.25 8.95 -148.98 -1.33 -11.59 16 15 C 0.09 1.99 2.74 30.63 0.08 2.07 16 16 H 0.08 1.76 7.66 -2.39 -0.02 1.75 16 17 C -0.15 -2.30 5.04 30.59 0.15 -2.14 16 18 C 0.45 8.78 3.16 71.98 0.23 9.01 16 19 F -0.18 -4.43 15.76 44.97 0.71 -3.72 16 20 F -0.19 -3.56 17.32 44.97 0.78 -2.78 16 21 F -0.19 -4.09 16.71 44.97 0.75 -3.34 16 22 C 0.03 0.68 4.91 86.32 0.42 1.11 16 23 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.00 0.06 6.28 -2.39 -0.02 0.04 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 27 H 0.02 0.94 8.08 -2.39 -0.02 0.92 16 28 H 0.08 2.98 6.05 -2.39 -0.01 2.96 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 32 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.16 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -64.85 296.98 3.03 -61.82 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.09 Total: 3.53 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 3.09 Total: -10.81 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -4.08 Total: -78.65 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.33 Total: -11.59 kcal Atomic # 9 Polarization: -12.08 SS G_CDS: 2.24 Total: -9.84 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.85 3.03 -61.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595888268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.538 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds