Wall clock time and date at job start Mon Mar 30 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.50838 * 2 1 4 4 C 1.53101 * 109.50932 * 120.08340 * 2 1 3 5 5 N 1.47007 * 109.25735 * 176.78275 * 4 2 1 6 6 C 1.46902 * 111.00246 * 177.60785 * 5 4 2 7 7 C 1.50710 * 109.47047 * 58.83746 * 6 5 4 8 8 H 1.08003 * 119.99342 * 4.98560 * 7 6 5 9 9 C 1.37868 * 120.00271 * 184.98477 * 7 6 5 10 10 N 1.31521 * 120.00081 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00284 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46536 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47239 * 119.99653 * 11 9 7 14 14 H 1.48499 * 109.47050 * 240.00269 * 11 9 7 15 15 C 1.47011 * 110.75517 * 301.38477 * 5 4 2 16 16 C 1.53096 * 109.26017 * 58.61768 * 15 5 4 17 17 H 1.09003 * 109.50195 * 63.13074 * 16 15 5 18 18 C 1.52994 * 109.50813 * 183.21712 * 16 15 5 19 19 C 1.53001 * 109.47054 * 184.99635 * 18 16 15 20 20 F 1.39903 * 109.46896 * 60.00180 * 19 18 16 21 21 F 1.39901 * 109.47070 * 179.97438 * 19 18 16 22 22 F 1.39897 * 109.47685 * 300.00105 * 19 18 16 23 23 O 1.43013 * 109.50693 * 239.86670 * 2 1 3 24 24 H 1.09003 * 109.46789 * 299.91599 * 1 2 3 25 25 H 1.08994 * 109.47359 * 59.91242 * 1 2 3 26 26 H 1.09000 * 109.46940 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.50650 * 56.84884 * 4 2 1 28 28 H 1.09003 * 109.54230 * 296.74177 * 4 2 1 29 29 H 1.08996 * 109.47581 * 178.83644 * 6 5 4 30 30 H 1.09004 * 109.47115 * 298.84632 * 6 5 4 31 31 H 0.96997 * 120.00119 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.50547 * 298.68084 * 15 5 4 33 33 H 1.09006 * 109.51099 * 178.55611 * 15 5 4 34 34 H 1.09004 * 109.47269 * 65.00230 * 18 16 15 35 35 H 1.08995 * 109.47517 * 304.99659 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7234 1.2487 5 7 3.5093 -0.7879 1.2047 6 6 4.0448 -1.4258 2.4148 7 6 3.4803 -2.8175 2.5408 8 1 2.8568 -3.2203 1.7563 9 6 3.7597 -3.5763 3.6575 10 7 4.5185 -3.0855 4.6130 11 14 3.0606 -5.3015 3.8133 12 1 2.2447 -5.6152 2.6129 13 1 4.1735 -6.2784 3.9251 14 1 2.2074 -5.3822 5.0261 15 6 3.9639 -1.4883 -0.0052 16 6 3.4335 -0.7573 -1.2413 17 1 3.8541 0.2476 -1.2782 18 6 3.8358 -1.5262 -2.5014 19 6 3.4142 -0.7323 -3.7396 20 9 4.0481 0.5149 -3.7319 21 9 3.7826 -1.4351 -4.8918 22 9 2.0272 -0.5505 -3.7272 23 8 2.0075 -0.6767 -1.1659 24 1 -0.3633 0.5126 0.8908 25 1 -0.3634 0.5152 -0.8891 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6332 -1.7337 1.2768 28 1 1.7274 -0.1792 2.1395 29 1 5.1313 -1.4792 2.3470 30 1 3.7636 -0.8392 3.2895 31 1 4.7155 -3.6195 5.3985 32 1 3.5866 -2.5109 0.0028 33 1 5.0536 -1.5021 -0.0301 34 1 3.3419 -2.4979 -2.5074 35 1 4.9164 -1.6678 -2.5112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595888578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:53 Heat of formation + Delta-G solvation = -207.575372 kcal Electronic energy + Delta-G solvation = -21669.931142 eV Core-core repulsion = 17866.536484 eV Total energy + Delta-G solvation = -3803.394658 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.96473 -47.52527 -47.36428 -39.34244 -35.39220 -33.93929 -32.45646 -30.74190 -27.93929 -26.71370 -24.76634 -23.45606 -21.67302 -21.25537 -19.82624 -18.41333 -18.23902 -17.26468 -16.53658 -16.23390 -15.48311 -14.74672 -14.57144 -14.44024 -14.29968 -13.93739 -13.88042 -13.70267 -13.57983 -13.54004 -12.97416 -12.63830 -12.27958 -12.15808 -11.89537 -11.76738 -11.71767 -11.19695 -11.00745 -10.95769 -10.69682 -10.42707 -10.25579 -9.86569 -9.76521 -9.06317 -8.52166 -7.35452 -6.11764 -4.21306 2.86470 3.20833 3.29566 3.32802 3.69946 3.88719 4.13168 4.26251 4.33520 4.79738 5.07681 5.14391 5.18544 5.32585 5.38722 5.49396 5.57351 5.63664 5.83072 5.88175 6.02273 6.15391 6.32074 6.42397 6.53656 6.72084 7.09645 7.41770 7.48599 7.78921 7.87502 8.09039 8.17451 8.88288 9.46250 10.93666 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024336 B = 0.005414 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.287423 B = 5170.855002 C = 5527.579505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.089 3.911 3 H 0.059 0.941 4 C 0.032 3.968 5 N -0.540 5.540 6 C 0.187 3.813 7 C -0.552 4.552 8 H 0.058 0.942 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.889 3.111 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.036 3.964 16 C 0.090 3.910 17 H 0.072 0.928 18 C -0.159 4.159 19 C 0.454 3.546 20 F -0.187 7.187 21 F -0.192 7.192 22 F -0.171 7.171 23 O -0.378 6.378 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.263 0.737 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 4.979 -13.344 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 H 0.077 0.923 4 C -0.096 4.096 5 N -0.264 5.264 6 C 0.061 3.939 7 C -0.591 4.591 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.717 3.283 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.094 4.094 16 C 0.032 3.968 17 H 0.090 0.910 18 C -0.197 4.197 19 C 0.400 3.600 20 F -0.169 7.169 21 F -0.173 7.173 22 F -0.152 7.152 23 O -0.298 6.298 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.973 5.369 -13.333 14.678 hybrid contribution -0.467 -1.713 0.313 1.803 sum -3.440 3.656 -13.020 13.954 Atomic orbital electron populations 1.21707 0.93381 1.02782 1.01944 1.22226 0.94276 0.95337 0.84999 0.92315 1.22595 0.89927 1.00331 0.96793 1.62749 1.07827 1.52161 1.03669 1.19784 0.95401 0.92385 0.86283 1.21754 1.31946 1.00735 1.04688 0.92377 1.24958 0.94870 0.98253 0.95620 1.69950 1.36938 1.37256 1.08633 0.86585 0.78987 0.84630 0.78126 1.19813 1.20870 1.20856 1.22476 1.00310 0.96908 0.89658 1.22044 0.82894 0.98857 0.92999 0.90979 1.22931 1.05421 1.01039 0.90331 1.20516 0.75602 0.78484 0.85366 1.93165 1.82178 1.44770 1.96763 1.93165 1.91549 1.78775 1.53823 1.93232 1.29954 1.95417 1.96628 1.87948 1.19544 1.78875 1.43403 0.91116 0.92211 0.91942 0.92971 0.90644 0.95235 0.94444 0.92754 0.92973 0.90469 0.86528 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.57 37.16 0.36 -1.52 16 2 C 0.09 1.43 3.43 -26.68 -0.09 1.34 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.03 0.62 4.58 -3.71 -0.02 0.60 16 5 N -0.54 -11.16 4.94 -235.75 -1.16 -12.32 16 6 C 0.19 4.64 5.15 -4.97 -0.03 4.61 16 7 C -0.55 -14.68 7.64 -34.44 -0.26 -14.95 16 8 H 0.06 1.55 5.81 -52.48 -0.31 1.24 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 11 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 C 0.04 0.64 4.65 -3.71 -0.02 0.63 16 16 C 0.09 1.38 2.74 -26.68 -0.07 1.30 16 17 H 0.07 1.09 7.66 -51.93 -0.40 0.69 16 18 C -0.16 -1.92 5.04 -26.73 -0.13 -2.06 16 19 C 0.45 5.81 3.16 37.16 0.12 5.93 16 20 F -0.19 -2.48 16.71 2.25 0.04 -2.45 16 21 F -0.19 -2.39 17.32 2.25 0.04 -2.35 16 22 F -0.17 -2.49 15.76 2.25 0.04 -2.45 16 23 O -0.38 -6.27 8.59 -35.23 -0.30 -6.57 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 1.10 6.58 -51.93 -0.34 0.76 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.03 0.78 8.12 -51.93 -0.42 0.35 16 30 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.05 1.04 6.76 -51.93 -0.35 0.69 16 33 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 34 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 295.38 15.07 4.45 4.45 Total: -1.00 -28.82 295.38 -6.19 -35.01 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.76 Total: -2.05 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.25 Total: -2.41 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.43 Total: -37.12 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.30 Total: -6.57 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.11 Total: -7.25 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.82 -6.19 -35.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595888578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.564 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds