Wall clock time and date at job start Mon Mar 30 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.50838 * 2 1 4 4 C 1.53101 * 109.50932 * 120.08340 * 2 1 3 5 5 N 1.47007 * 109.25735 * 176.78275 * 4 2 1 6 6 C 1.46902 * 111.00246 * 177.60785 * 5 4 2 7 7 C 1.50710 * 109.47047 * 58.83746 * 6 5 4 8 8 H 1.08003 * 119.99342 * 4.98560 * 7 6 5 9 9 C 1.37868 * 120.00271 * 184.98477 * 7 6 5 10 10 N 1.31521 * 120.00081 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00284 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46536 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47239 * 119.99653 * 11 9 7 14 14 H 1.48499 * 109.47050 * 240.00269 * 11 9 7 15 15 C 1.47011 * 110.75517 * 301.38477 * 5 4 2 16 16 C 1.53096 * 109.26017 * 58.61768 * 15 5 4 17 17 H 1.09003 * 109.50195 * 63.13074 * 16 15 5 18 18 C 1.52994 * 109.50813 * 183.21712 * 16 15 5 19 19 C 1.53001 * 109.47054 * 184.99635 * 18 16 15 20 20 F 1.39903 * 109.46896 * 60.00180 * 19 18 16 21 21 F 1.39901 * 109.47070 * 179.97438 * 19 18 16 22 22 F 1.39897 * 109.47685 * 300.00105 * 19 18 16 23 23 O 1.43013 * 109.50693 * 239.86670 * 2 1 3 24 24 H 1.09003 * 109.46789 * 299.91599 * 1 2 3 25 25 H 1.08994 * 109.47359 * 59.91242 * 1 2 3 26 26 H 1.09000 * 109.46940 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.50650 * 56.84884 * 4 2 1 28 28 H 1.09003 * 109.54230 * 296.74177 * 4 2 1 29 29 H 1.08996 * 109.47581 * 178.83644 * 6 5 4 30 30 H 1.09004 * 109.47115 * 298.84632 * 6 5 4 31 31 H 0.96997 * 120.00119 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.50547 * 298.68084 * 15 5 4 33 33 H 1.09006 * 109.51099 * 178.55611 * 15 5 4 34 34 H 1.09004 * 109.47269 * 65.00230 * 18 16 15 35 35 H 1.08995 * 109.47517 * 304.99659 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7234 1.2487 5 7 3.5093 -0.7879 1.2047 6 6 4.0448 -1.4258 2.4148 7 6 3.4803 -2.8175 2.5408 8 1 2.8568 -3.2203 1.7563 9 6 3.7597 -3.5763 3.6575 10 7 4.5185 -3.0855 4.6130 11 14 3.0606 -5.3015 3.8133 12 1 2.2447 -5.6152 2.6129 13 1 4.1735 -6.2784 3.9251 14 1 2.2074 -5.3822 5.0261 15 6 3.9639 -1.4883 -0.0052 16 6 3.4335 -0.7573 -1.2413 17 1 3.8541 0.2476 -1.2782 18 6 3.8358 -1.5262 -2.5014 19 6 3.4142 -0.7323 -3.7396 20 9 4.0481 0.5149 -3.7319 21 9 3.7826 -1.4351 -4.8918 22 9 2.0272 -0.5505 -3.7272 23 8 2.0075 -0.6767 -1.1659 24 1 -0.3633 0.5126 0.8908 25 1 -0.3634 0.5152 -0.8891 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6332 -1.7337 1.2768 28 1 1.7274 -0.1792 2.1395 29 1 5.1313 -1.4792 2.3470 30 1 3.7636 -0.8392 3.2895 31 1 4.7155 -3.6195 5.3985 32 1 3.5866 -2.5109 0.0028 33 1 5.0536 -1.5021 -0.0301 34 1 3.3419 -2.4979 -2.5074 35 1 4.9164 -1.6678 -2.5112 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595888578.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:50 Heat of formation + Delta-G solvation = -226.096637 kcal Electronic energy + Delta-G solvation = -21670.734284 eV Core-core repulsion = 17866.536484 eV Total energy + Delta-G solvation = -3804.197800 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -50.98951 -48.53088 -48.42181 -40.74704 -37.04898 -35.12776 -34.47247 -31.94623 -29.60996 -28.21965 -26.42957 -24.83855 -22.91670 -22.76993 -21.34374 -19.44961 -19.29101 -18.66102 -18.24794 -17.49464 -17.04548 -16.45096 -16.12798 -15.55733 -15.36215 -15.34853 -15.15225 -14.90981 -14.68430 -14.62513 -14.58526 -13.85551 -13.70109 -13.54539 -13.40421 -13.01932 -12.91347 -12.85028 -12.77030 -12.55001 -12.22666 -12.09902 -11.88313 -11.80680 -11.31970 -10.64021 -10.47762 -9.13763 -8.19448 -6.38428 1.34481 1.36864 1.47641 1.84489 2.35005 2.53835 2.82178 3.05348 3.07321 3.23000 3.34194 3.91734 3.94577 4.08355 4.14560 4.26686 4.39578 4.41062 4.51656 4.68878 4.75912 4.91090 4.97618 5.02110 5.17379 5.19096 5.28363 5.32449 5.70580 5.95816 6.15687 6.18867 6.38210 6.80791 7.33344 8.83938 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024336 B = 0.005414 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.287423 B = 5170.855002 C = 5527.579505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.093 3.907 3 H 0.067 0.933 4 C 0.035 3.965 5 N -0.542 5.542 6 C 0.200 3.800 7 C -0.556 4.556 8 H 0.055 0.945 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.956 3.044 12 H -0.269 1.269 13 H -0.277 1.277 14 H -0.278 1.278 15 C 0.036 3.964 16 C 0.096 3.904 17 H 0.078 0.922 18 C -0.153 4.153 19 C 0.459 3.541 20 F -0.189 7.189 21 F -0.188 7.188 22 F -0.182 7.182 23 O -0.385 6.385 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.266 0.734 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 4.654 -14.676 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.036 3.964 3 H 0.085 0.915 4 C -0.094 4.094 5 N -0.265 5.265 6 C 0.073 3.927 7 C -0.595 4.595 8 H 0.074 0.926 9 C -0.185 4.185 10 N -0.564 5.564 11 Si 0.781 3.219 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.204 1.204 15 C -0.092 4.092 16 C 0.037 3.963 17 H 0.096 0.904 18 C -0.191 4.191 19 C 0.405 3.595 20 F -0.171 7.171 21 F -0.169 7.169 22 F -0.163 7.163 23 O -0.304 6.304 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.572 5.052 -14.689 15.939 hybrid contribution -0.258 -1.563 0.713 1.737 sum -3.830 3.489 -13.976 14.905 Atomic orbital electron populations 1.21708 0.91169 1.02858 1.03531 1.22268 0.95980 0.94982 0.83211 0.91484 1.22627 0.88681 0.99379 0.98678 1.62661 1.08931 1.51808 1.03139 1.19440 0.94189 0.91694 0.87336 1.21955 1.31565 1.01444 1.04568 0.92646 1.25774 0.95206 1.02213 0.95345 1.70060 1.38209 1.38879 1.09257 0.85542 0.78363 0.79842 0.78160 1.19303 1.20239 1.20407 1.22531 1.00845 0.96047 0.89808 1.22036 0.82234 0.99130 0.92859 0.90448 1.22946 1.07260 1.00554 0.88340 1.20500 0.75024 0.78380 0.85600 1.93164 1.82134 1.45013 1.96788 1.93174 1.91451 1.78663 1.53634 1.93213 1.30948 1.95487 1.96696 1.87968 1.20261 1.78940 1.43263 0.89495 0.90675 0.92612 0.95397 0.91065 0.97229 0.97212 0.92521 0.94887 0.89758 0.85850 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.57 71.98 0.69 -2.65 16 2 C 0.09 2.86 3.43 30.63 0.10 2.96 16 3 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 4 C 0.04 1.34 4.58 86.32 0.40 1.73 16 5 N -0.54 -22.56 4.94 -899.76 -4.44 -27.00 16 6 C 0.20 10.21 5.15 85.56 0.44 10.65 16 7 C -0.56 -30.01 7.64 25.60 0.20 -29.81 16 8 H 0.06 2.98 5.81 -2.91 -0.02 2.96 16 9 C 0.01 0.79 5.46 84.65 0.46 1.25 16 10 N -0.92 -53.82 13.29 21.44 0.28 -53.53 16 11 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 14 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 15 C 0.04 1.30 4.65 86.31 0.40 1.70 16 16 C 0.10 2.74 2.74 30.62 0.08 2.83 16 17 H 0.08 2.18 7.66 -2.39 -0.02 2.16 16 18 C -0.15 -3.33 5.04 30.59 0.15 -3.17 16 19 C 0.46 10.66 3.16 71.98 0.23 10.88 16 20 F -0.19 -4.59 16.71 44.97 0.75 -3.84 16 21 F -0.19 -4.23 17.32 44.97 0.78 -3.45 16 22 F -0.18 -4.92 15.76 44.97 0.71 -4.21 16 23 O -0.38 -12.09 8.59 -148.98 -1.28 -13.37 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.03 1.19 6.58 -2.39 -0.02 1.18 16 28 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.01 0.52 8.12 -2.39 -0.02 0.50 16 30 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.03 1.31 6.76 -2.39 -0.02 1.29 16 33 H 0.08 2.84 8.13 -2.38 -0.02 2.83 16 34 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -61.43 295.38 3.07 -58.36 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.09 Total: 5.63 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 3.15 Total: -3.63 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -4.16 Total: -80.53 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.28 Total: -13.37 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 2.24 Total: -11.50 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -61.43 3.07 -58.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595888578.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.737 kcal (2) G-P(sol) polarization free energy of solvation -61.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds