Wall clock time and date at job start Mon Mar 30 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.54545 * 2 1 4 4 O 1.43013 * 109.50390 * 239.88797 * 2 1 3 5 5 C 1.43019 * 113.74100 * 298.73321 * 4 2 1 6 6 C 1.53093 * 109.25920 * 301.33665 * 5 4 2 7 7 N 1.47011 * 109.26075 * 56.84666 * 6 5 4 8 8 C 1.46899 * 110.99880 * 177.60923 * 7 6 5 9 9 C 1.53005 * 109.47166 * 301.56512 * 8 7 6 10 10 C 1.50698 * 109.47305 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99926 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00141 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99719 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00228 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46968 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47492 * 119.99971 * 14 12 10 17 17 H 1.48506 * 109.46948 * 239.99948 * 14 12 10 18 18 C 1.47016 * 110.75469 * 301.38218 * 7 6 5 19 19 H 1.09001 * 109.50553 * 298.64283 * 18 7 6 20 20 C 1.52990 * 109.51070 * 178.55250 * 18 7 6 21 21 F 1.39894 * 109.47183 * 67.54373 * 20 18 7 22 22 F 1.39905 * 109.47062 * 307.54076 * 20 18 7 23 23 F 1.39904 * 109.47313 * 187.54475 * 20 18 7 24 24 H 1.08999 * 109.47183 * 309.79239 * 1 2 3 25 25 H 1.09000 * 109.46880 * 69.78792 * 1 2 3 26 26 H 1.08996 * 109.47818 * 189.78914 * 1 2 3 27 27 H 1.08996 * 109.50209 * 181.39539 * 5 4 2 28 28 H 1.09007 * 109.50125 * 61.26973 * 5 4 2 29 29 H 1.09001 * 109.50483 * 296.90695 * 6 5 4 30 30 H 1.09005 * 109.53842 * 176.80430 * 6 5 4 31 31 H 1.08990 * 109.47437 * 61.56865 * 8 7 6 32 32 H 1.09007 * 109.47072 * 181.57229 * 8 7 6 33 33 H 1.09003 * 109.47090 * 300.00824 * 9 8 7 34 34 H 1.09007 * 109.46540 * 60.00391 * 9 8 7 35 35 H 0.97002 * 119.99830 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 8 2.0075 -0.6763 -1.1661 5 6 1.6065 -2.0471 -1.2415 6 6 2.1184 -2.7916 -0.0056 7 7 1.6108 -2.1290 1.2045 8 6 2.0334 -2.8470 2.4144 9 6 1.5243 -4.2887 2.3559 10 6 1.9573 -5.0251 3.5973 11 1 2.5372 -4.5157 4.3528 12 6 1.6131 -6.3491 3.7688 13 7 0.9065 -6.9693 2.8491 14 14 2.1491 -7.2618 5.3080 15 1 2.9273 -6.3462 6.1806 16 1 0.9507 -7.7445 6.0400 17 1 2.9962 -8.4205 4.9266 18 6 2.0411 -0.7239 1.2485 19 1 3.1298 -0.6774 1.2768 20 6 1.4684 -0.0530 2.4985 21 9 2.0634 -0.6048 3.6380 22 9 0.0857 -0.2608 2.5473 23 9 1.7322 1.3202 2.4532 24 1 -0.3633 0.6577 0.7896 25 1 -0.3633 0.3551 -0.9644 26 1 -0.3634 -1.0126 0.1747 27 1 2.0264 -2.5002 -2.1394 28 1 0.5187 -2.1065 -1.2776 29 1 3.2083 -2.7781 0.0019 30 1 1.7673 -3.8233 -0.0302 31 1 3.1216 -2.8482 2.4748 32 1 1.6212 -2.3516 3.2936 33 1 0.4360 -4.2875 2.2954 34 1 1.9365 -4.7841 1.4768 35 1 0.6646 -7.9009 2.9695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595895730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:14 Heat of formation + Delta-G solvation = -188.311235 kcal Electronic energy + Delta-G solvation = -22323.774411 eV Core-core repulsion = 18521.215109 eV Total energy + Delta-G solvation = -3802.559302 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 5.13 seconds Orbital eigenvalues (eV) -50.04145 -47.56773 -47.38310 -39.88825 -36.07503 -33.32524 -32.58861 -30.08463 -28.93554 -26.98746 -24.83867 -23.48868 -22.90753 -20.49850 -19.71384 -18.41185 -18.37889 -17.46487 -16.45767 -16.10908 -15.89617 -15.05990 -14.68689 -14.51914 -14.31470 -14.28474 -14.02050 -13.85925 -13.67144 -13.61748 -13.47189 -12.93607 -12.41916 -12.20342 -11.92960 -11.52269 -11.46438 -11.38328 -11.10510 -10.92051 -10.56939 -10.32003 -10.02684 -9.66008 -9.37086 -9.17278 -8.39565 -8.13835 -6.05427 -4.07689 2.78630 3.28655 3.36302 3.40498 3.63019 3.72501 4.02465 4.07924 4.41744 4.54941 4.77032 4.89129 5.09798 5.16490 5.30787 5.34585 5.39984 5.52993 5.70160 5.89180 6.00094 6.05717 6.19308 6.26392 6.38474 6.80591 7.05094 7.09102 7.16026 7.62495 7.76187 7.96401 8.35491 8.98634 9.56515 11.05967 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.006243 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.164868 B = 4484.067933 C = 5207.225877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.100 3.900 3 H 0.111 0.889 4 O -0.373 6.373 5 C 0.056 3.944 6 C 0.020 3.980 7 N -0.520 5.520 8 C 0.035 3.965 9 C 0.030 3.970 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.004 3.996 19 H 0.085 0.915 20 C 0.463 3.537 21 F -0.174 7.174 22 F -0.166 7.166 23 F -0.187 7.187 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.110 0.890 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.018 0.982 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.934 13.969 -6.492 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.041 3.959 3 H 0.128 0.872 4 O -0.291 6.291 5 C -0.021 4.021 6 C -0.107 4.107 7 N -0.246 5.246 8 C -0.091 4.091 9 C -0.008 4.008 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.142 4.142 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.107 4.107 19 H 0.103 0.897 20 C 0.409 3.591 21 F -0.155 7.155 22 F -0.147 7.147 23 F -0.168 7.168 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.128 0.872 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.444 13.887 -6.661 15.408 hybrid contribution 0.981 -0.691 1.394 1.839 sum 1.425 13.196 -5.267 14.279 Atomic orbital electron populations 1.22601 0.94551 1.04992 1.02593 1.22148 0.95262 0.95429 0.83063 0.87160 1.88043 1.75621 1.24149 1.41336 1.22830 1.00425 0.81047 0.97794 1.22885 0.98308 1.00607 0.88918 1.62444 1.59146 0.98124 1.04918 1.22988 0.97714 0.98554 0.89798 1.19124 0.97282 0.87211 0.97149 1.21180 1.34193 0.95884 1.04771 0.92626 1.24978 0.95075 0.97625 0.96554 1.69973 1.38095 1.11192 1.33947 0.86524 0.78430 0.79734 0.83255 1.19728 1.20920 1.21008 1.23438 1.00202 0.94222 0.92863 0.89715 1.20244 0.76969 0.76223 0.85703 1.93152 1.83716 1.84403 1.54244 1.93190 1.30435 1.94472 1.96584 1.93150 1.93906 1.33090 1.96696 0.91022 0.91828 0.89668 0.88223 0.91572 0.93887 0.87221 0.95455 0.89708 0.95526 0.96368 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 7.37 37.16 0.27 -2.08 16 2 C 0.10 1.28 3.24 -26.68 -0.09 1.19 16 3 H 0.11 1.22 7.75 -51.93 -0.40 0.82 16 4 O -0.37 -5.09 10.64 -35.23 -0.37 -5.46 16 5 C 0.06 0.72 6.62 37.21 0.25 0.97 16 6 C 0.02 0.32 5.30 -3.71 -0.02 0.30 16 7 N -0.52 -8.97 3.61 -226.34 -0.82 -9.79 16 8 C 0.04 0.73 4.17 -3.82 -0.02 0.71 16 9 C 0.03 0.75 4.70 -27.88 -0.13 0.61 16 10 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C 0.00 0.06 1.92 -67.60 -0.13 -0.07 16 19 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.46 6.98 2.28 37.15 0.08 7.06 16 21 F -0.17 -2.93 14.12 2.25 0.03 -2.90 16 22 F -0.17 -2.64 14.08 2.25 0.03 -2.61 16 23 F -0.19 -2.50 16.59 2.25 0.04 -2.46 16 24 H 0.07 0.87 6.32 -51.93 -0.33 0.54 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.08 1.21 6.37 -51.93 -0.33 0.88 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.07 0.85 6.72 -51.93 -0.35 0.50 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 1.89 6.15 -51.93 -0.32 1.57 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.81 5.27 -51.93 -0.27 1.54 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.47 6.33 -51.93 -0.33 0.14 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 LS Contribution 283.15 15.07 4.27 4.27 Total: -1.00 -29.35 283.15 -5.71 -35.05 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -4.41 Total: -2.36 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -0.19 Total: -4.64 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.08 Total: -35.39 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.37 Total: -5.46 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.10 Total: -7.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.35 -5.71 -35.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595895730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.259 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.13 seconds