Wall clock time and date at job start Mon Mar 30 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.54545 * 2 1 4 4 O 1.43013 * 109.50390 * 239.88797 * 2 1 3 5 5 C 1.43019 * 113.74100 * 298.73321 * 4 2 1 6 6 C 1.53093 * 109.25920 * 301.33665 * 5 4 2 7 7 N 1.47011 * 109.26075 * 56.84666 * 6 5 4 8 8 C 1.46899 * 110.99880 * 177.60923 * 7 6 5 9 9 C 1.53005 * 109.47166 * 301.56512 * 8 7 6 10 10 C 1.50698 * 109.47305 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99926 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00141 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99719 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00228 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.46968 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47492 * 119.99971 * 14 12 10 17 17 H 1.48506 * 109.46948 * 239.99948 * 14 12 10 18 18 C 1.47016 * 110.75469 * 301.38218 * 7 6 5 19 19 H 1.09001 * 109.50553 * 298.64283 * 18 7 6 20 20 C 1.52990 * 109.51070 * 178.55250 * 18 7 6 21 21 F 1.39894 * 109.47183 * 67.54373 * 20 18 7 22 22 F 1.39905 * 109.47062 * 307.54076 * 20 18 7 23 23 F 1.39904 * 109.47313 * 187.54475 * 20 18 7 24 24 H 1.08999 * 109.47183 * 309.79239 * 1 2 3 25 25 H 1.09000 * 109.46880 * 69.78792 * 1 2 3 26 26 H 1.08996 * 109.47818 * 189.78914 * 1 2 3 27 27 H 1.08996 * 109.50209 * 181.39539 * 5 4 2 28 28 H 1.09007 * 109.50125 * 61.26973 * 5 4 2 29 29 H 1.09001 * 109.50483 * 296.90695 * 6 5 4 30 30 H 1.09005 * 109.53842 * 176.80430 * 6 5 4 31 31 H 1.08990 * 109.47437 * 61.56865 * 8 7 6 32 32 H 1.09007 * 109.47072 * 181.57229 * 8 7 6 33 33 H 1.09003 * 109.47090 * 300.00824 * 9 8 7 34 34 H 1.09007 * 109.46540 * 60.00391 * 9 8 7 35 35 H 0.97002 * 119.99830 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 8 2.0075 -0.6763 -1.1661 5 6 1.6065 -2.0471 -1.2415 6 6 2.1184 -2.7916 -0.0056 7 7 1.6108 -2.1290 1.2045 8 6 2.0334 -2.8470 2.4144 9 6 1.5243 -4.2887 2.3559 10 6 1.9573 -5.0251 3.5973 11 1 2.5372 -4.5157 4.3528 12 6 1.6131 -6.3491 3.7688 13 7 0.9065 -6.9693 2.8491 14 14 2.1491 -7.2618 5.3080 15 1 2.9273 -6.3462 6.1806 16 1 0.9507 -7.7445 6.0400 17 1 2.9962 -8.4205 4.9266 18 6 2.0411 -0.7239 1.2485 19 1 3.1298 -0.6774 1.2768 20 6 1.4684 -0.0530 2.4985 21 9 2.0634 -0.6048 3.6380 22 9 0.0857 -0.2608 2.5473 23 9 1.7322 1.3202 2.4532 24 1 -0.3633 0.6577 0.7896 25 1 -0.3633 0.3551 -0.9644 26 1 -0.3634 -1.0126 0.1747 27 1 2.0264 -2.5002 -2.1394 28 1 0.5187 -2.1065 -1.2776 29 1 3.2083 -2.7781 0.0019 30 1 1.7673 -3.8233 -0.0302 31 1 3.1216 -2.8482 2.4748 32 1 1.6212 -2.3516 3.2936 33 1 0.4360 -4.2875 2.2954 34 1 1.9365 -4.7841 1.4768 35 1 0.6646 -7.9009 2.9695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595895730.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:11 Heat of formation + Delta-G solvation = -207.193071 kcal Electronic energy + Delta-G solvation = -22324.593189 eV Core-core repulsion = 18521.215109 eV Total energy + Delta-G solvation = -3803.378080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.26470 -48.79255 -48.61095 -41.07077 -37.46692 -35.18567 -33.93754 -31.83205 -30.09155 -28.46391 -26.38734 -25.03114 -24.13473 -22.22905 -20.89323 -19.63473 -19.60691 -18.92871 -18.20603 -17.38359 -17.06242 -16.54925 -16.31649 -15.81179 -15.69883 -15.51527 -15.31348 -15.14924 -14.95581 -14.89993 -14.72946 -14.42148 -14.15271 -13.72896 -13.35807 -12.90896 -12.79946 -12.67266 -12.57460 -12.47291 -12.35457 -11.91475 -11.51357 -11.27703 -11.24145 -10.75945 -10.55378 -9.54030 -8.22623 -6.33017 1.38639 1.39618 1.52329 1.58192 2.31481 2.46211 2.53892 2.85648 2.94739 3.11365 3.31145 3.60650 3.80164 3.90645 4.08339 4.19211 4.29444 4.35282 4.47325 4.63375 4.67606 4.84107 4.91264 4.98829 5.01573 5.36832 5.37361 5.53099 5.67753 5.80355 5.90798 6.01732 6.23146 6.82349 7.35898 8.89325 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.006243 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.164868 B = 4484.067933 C = 5207.225877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.101 3.899 3 H 0.137 0.863 4 O -0.374 6.374 5 C 0.063 3.937 6 C 0.020 3.980 7 N -0.528 5.528 8 C 0.054 3.946 9 C 0.039 3.961 10 C -0.545 4.545 11 H 0.056 0.944 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.962 3.038 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.276 1.276 18 C 0.004 3.996 19 H 0.094 0.906 20 C 0.464 3.536 21 F -0.186 7.186 22 F -0.172 7.172 23 F -0.173 7.173 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.126 0.874 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.026 0.974 32 H 0.079 0.921 33 H -0.005 1.005 34 H 0.005 0.995 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 15.026 -6.688 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.043 3.957 3 H 0.155 0.845 4 O -0.292 6.292 5 C -0.013 4.013 6 C -0.107 4.107 7 N -0.254 5.254 8 C -0.073 4.073 9 C 0.002 3.998 10 C -0.583 4.583 11 H 0.074 0.926 12 C -0.193 4.193 13 N -0.567 5.567 14 Si 0.787 3.213 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.202 1.202 18 C -0.107 4.107 19 H 0.112 0.888 20 C 0.410 3.590 21 F -0.168 7.168 22 F -0.154 7.154 23 F -0.155 7.155 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.144 0.856 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.013 0.987 34 H 0.023 0.977 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.089 14.963 -6.868 16.499 hybrid contribution 0.761 -0.981 1.421 1.887 sum 1.849 13.981 -5.447 15.118 Atomic orbital electron populations 1.22545 0.94244 1.03782 1.03707 1.22327 0.95502 0.96175 0.81723 0.84548 1.88054 1.75705 1.24070 1.41370 1.22850 1.00627 0.80724 0.97143 1.22897 0.98350 0.99904 0.89569 1.62306 1.59602 0.99445 1.04021 1.22576 0.97147 0.96151 0.91442 1.18918 0.95108 0.89997 0.95774 1.21591 1.34385 0.96653 1.05720 0.92611 1.25874 0.94976 0.98573 0.99829 1.70089 1.39032 1.11676 1.35903 0.85439 0.78203 0.78425 0.79224 1.18920 1.20351 1.20151 1.23578 1.00803 0.92435 0.93843 0.88821 1.20292 0.76583 0.76806 0.85367 1.93124 1.83897 1.84733 1.55031 1.93181 1.31008 1.94594 1.96592 1.93176 1.93770 1.31905 1.96603 0.90730 0.90066 0.91848 0.85618 0.91402 0.93767 0.89491 0.95621 0.90334 0.98656 0.97712 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.23 7.37 71.98 0.53 -3.70 16 2 C 0.10 2.34 3.24 30.63 0.10 2.44 16 3 H 0.14 2.51 7.75 -2.39 -0.02 2.49 16 4 O -0.37 -9.17 10.64 -148.98 -1.59 -10.76 16 5 C 0.06 1.53 6.62 72.01 0.48 2.01 16 6 C 0.02 0.63 5.30 86.31 0.46 1.08 16 7 N -0.53 -18.14 3.61 -870.01 -3.14 -21.28 16 8 C 0.05 2.25 4.17 86.31 0.36 2.61 16 9 C 0.04 2.05 4.70 29.85 0.14 2.19 16 10 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 11 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 12 C 0.01 0.34 5.46 84.65 0.46 0.80 16 13 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 14 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 C 0.00 0.12 1.92 44.92 0.09 0.21 16 19 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 20 C 0.46 13.40 2.28 71.98 0.16 13.57 16 21 F -0.19 -6.18 14.12 44.97 0.64 -5.55 16 22 F -0.17 -5.38 14.08 44.97 0.63 -4.75 16 23 F -0.17 -4.25 16.59 44.97 0.75 -3.50 16 24 H 0.07 1.65 6.32 -2.39 -0.02 1.64 16 25 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.74 6.37 -2.39 -0.02 1.73 16 27 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.07 1.65 6.72 -2.38 -0.02 1.63 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 3.10 6.15 -2.38 -0.01 3.09 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 3.40 5.27 -2.38 -0.01 3.39 16 33 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.00 0.25 6.33 -2.38 -0.02 0.24 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -62.72 283.15 3.72 -59.01 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.10 Total: 5.48 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 3.01 Total: -9.60 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -2.85 Total: -76.59 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -1.59 Total: -10.76 kcal Atomic # 9 Polarization: -15.82 SS G_CDS: 2.01 Total: -13.80 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -62.72 3.72 -59.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595895730.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.187 kcal (2) G-P(sol) polarization free energy of solvation -62.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds