Wall clock time and date at job start Mon Mar 30 2020 04:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47152 * 64.99954 * 12 11 10 14 14 C 1.48552 * 110.99962 * 285.41784 * 13 12 11 15 15 C 1.54378 * 104.59578 * 200.95957 * 14 13 12 16 16 C 1.54254 * 105.06215 * 23.85005 * 15 14 13 17 17 C 1.48560 * 111.00070 * 169.99796 * 13 12 11 18 18 H 1.09001 * 110.41348 * 40.26204 * 17 13 12 19 19 C 1.53001 * 110.41143 * 277.81823 * 17 13 12 20 20 F 1.39901 * 109.46892 * 60.00038 * 19 17 13 21 21 F 1.39904 * 109.46935 * 179.97438 * 19 17 13 22 22 F 1.39896 * 109.47173 * 300.00125 * 19 17 13 23 23 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 25 25 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 26 26 H 1.08997 * 109.47171 * 299.99768 * 11 10 9 27 27 H 1.08997 * 109.47442 * 59.99964 * 11 10 9 28 28 H 1.09004 * 109.47113 * 184.99738 * 12 11 10 29 29 H 1.08993 * 109.47646 * 305.00069 * 12 11 10 30 30 H 1.09003 * 110.41368 * 319.73716 * 14 13 12 31 31 H 1.09006 * 110.41484 * 82.18226 * 14 13 12 32 32 H 1.09002 * 110.32494 * 264.95949 * 15 14 13 33 33 H 1.09000 * 110.32896 * 142.75055 * 15 14 13 34 34 H 1.08993 * 110.33005 * 241.10559 * 16 15 14 35 35 H 1.09001 * 110.32590 * 118.89342 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.5652 -4.8754 0.0013 12 6 2.6482 -5.9561 0.0020 13 7 3.4074 -5.8877 1.2578 14 6 4.3294 -4.7229 1.2597 15 6 5.3944 -5.0715 2.3215 16 6 5.3778 -6.6111 2.4155 17 6 4.3042 -7.0633 1.4025 18 1 4.7644 -7.3105 0.4458 19 6 3.5273 -8.2631 1.9482 20 9 2.4903 -8.5871 1.0668 21 9 4.3892 -9.3577 2.0760 22 9 2.9920 -7.9418 3.2001 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8903 26 1 0.9442 -4.9823 0.8906 27 1 0.9461 -4.9826 -0.8894 28 1 2.1823 -6.9375 -0.0879 29 1 3.3224 -5.7956 -0.8393 30 1 4.7935 -4.6038 0.2807 31 1 3.7950 -3.8155 1.5410 32 1 5.1293 -4.6308 3.2826 33 1 6.3762 -4.7223 2.0020 34 1 5.1046 -6.9261 3.4226 35 1 6.3515 -7.0177 2.1419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599599511.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:47 Heat of formation + Delta-G solvation = -202.379058 kcal Electronic energy + Delta-G solvation = -21329.734143 eV Core-core repulsion = 17526.564814 eV Total energy + Delta-G solvation = -3803.169329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.09046 -47.65240 -47.50998 -39.11066 -36.58782 -33.06642 -32.27195 -30.33180 -28.33345 -26.69201 -24.98406 -22.51043 -21.98971 -21.05936 -20.72853 -18.56216 -18.23434 -17.64280 -16.44116 -16.03760 -15.58750 -14.93220 -14.66514 -14.48999 -14.35307 -14.07653 -14.05906 -13.90277 -13.74454 -13.68296 -13.51762 -12.85112 -12.58933 -12.43834 -11.79890 -11.44377 -11.30035 -11.21643 -11.08458 -10.80871 -10.74235 -10.58286 -10.50688 -10.01541 -9.11418 -8.82704 -8.56957 -8.16900 -6.11997 -4.14014 2.67895 3.28640 3.34056 3.38421 3.57682 3.81696 3.90765 4.33039 4.42768 4.61619 4.77246 4.79375 4.91632 5.18205 5.24620 5.33646 5.45583 5.58168 5.67614 5.74215 5.90778 6.01075 6.07393 6.17995 6.31491 6.51013 6.81201 6.99667 7.11788 7.43745 7.76979 8.14117 8.55880 8.98757 9.50927 10.99515 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.004420 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.719387 B = 6333.610686 C = 6820.648201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.394 6.394 11 C 0.069 3.931 12 C 0.035 3.965 13 N -0.492 5.492 14 C 0.047 3.953 15 C -0.125 4.125 16 C -0.117 4.117 17 C 0.009 3.991 18 H 0.092 0.908 19 C 0.465 3.535 20 F -0.183 7.183 21 F -0.187 7.187 22 F -0.172 7.172 23 H 0.264 0.736 24 H 0.003 0.997 25 H 0.006 0.994 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.601 -15.827 3.234 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.314 6.314 11 C -0.009 4.009 12 C -0.093 4.093 13 N -0.217 5.217 14 C -0.080 4.080 15 C -0.163 4.163 16 C -0.155 4.155 17 C -0.102 4.102 18 H 0.110 0.890 19 C 0.410 3.590 20 F -0.164 7.164 21 F -0.169 7.169 22 F -0.153 7.153 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.211 -15.655 3.666 18.530 hybrid contribution 0.326 0.530 -0.714 0.947 sum 9.537 -15.125 2.952 18.122 Atomic orbital electron populations 1.69964 1.06111 1.27145 1.50460 1.24944 0.94946 0.99401 0.95173 0.86360 0.79664 0.82412 0.78178 1.20537 1.21094 1.19646 1.21024 0.93904 0.89368 1.50892 0.91663 1.20174 0.88780 0.83512 0.95369 1.87826 1.35453 1.12978 1.95170 1.22172 0.93952 0.85095 0.99664 1.22648 0.96911 0.99771 0.89928 1.65287 1.20992 1.00340 1.35062 1.23234 0.92280 0.94698 0.97780 1.22372 0.99371 0.93759 1.00811 1.22322 0.96887 0.97546 0.98721 1.23812 0.94014 0.91294 1.01066 0.89016 1.20371 0.78081 0.84128 0.76388 1.93113 1.60916 1.93548 1.68866 1.93162 1.70170 1.57594 1.95977 1.93182 1.86937 1.92561 1.42615 0.92656 0.97908 0.97649 0.93437 0.93884 0.89169 0.93417 0.93094 0.86712 0.90400 0.90918 0.90016 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -14.72 9.43 -34.44 -0.32 -15.05 16 8 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.20 5.26 5.69 36.01 0.20 5.47 16 10 O -0.39 -8.99 7.81 -35.23 -0.28 -9.27 16 11 C 0.07 1.28 6.26 37.16 0.23 1.51 16 12 C 0.04 0.53 5.29 -3.82 -0.02 0.51 16 13 N -0.49 -7.25 4.97 -222.14 -1.10 -8.35 16 14 C 0.05 0.70 5.34 -2.19 -0.01 0.68 16 15 C -0.12 -1.43 7.00 -25.35 -0.18 -1.61 16 16 C -0.12 -1.20 6.35 -25.35 -0.16 -1.36 16 17 C 0.01 0.10 2.36 -66.07 -0.16 -0.05 16 18 H 0.09 0.95 8.00 -51.93 -0.42 0.53 16 19 C 0.47 5.74 2.85 37.16 0.11 5.85 16 20 F -0.18 -2.39 14.89 2.25 0.03 -2.36 16 21 F -0.19 -2.16 17.18 2.25 0.04 -2.12 16 22 F -0.17 -2.37 16.37 2.25 0.04 -2.33 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 24 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.22 5.71 -51.93 -0.30 0.92 16 29 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 30 H 0.05 0.76 7.75 -51.93 -0.40 0.36 16 31 H 0.11 2.11 6.83 -51.93 -0.35 1.75 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.84 7.19 -51.93 -0.37 0.47 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 297.76 15.07 4.49 4.49 Total: -1.00 -30.01 297.76 -6.22 -36.23 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -4.75 Total: -4.28 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.40 Total: -2.54 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.37 Total: -34.31 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.28 Total: -9.27 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.01 -6.22 -36.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599599511.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.147 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds