Wall clock time and date at job start Mon Mar 30 2020 04:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47152 * 64.99954 * 12 11 10 14 14 C 1.48552 * 110.99962 * 285.41784 * 13 12 11 15 15 C 1.54378 * 104.59578 * 200.95957 * 14 13 12 16 16 C 1.54254 * 105.06215 * 23.85005 * 15 14 13 17 17 C 1.48560 * 111.00070 * 169.99796 * 13 12 11 18 18 H 1.09001 * 110.41348 * 40.26204 * 17 13 12 19 19 C 1.53001 * 110.41143 * 277.81823 * 17 13 12 20 20 F 1.39901 * 109.46892 * 60.00038 * 19 17 13 21 21 F 1.39904 * 109.46935 * 179.97438 * 19 17 13 22 22 F 1.39896 * 109.47173 * 300.00125 * 19 17 13 23 23 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 25 25 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 26 26 H 1.08997 * 109.47171 * 299.99768 * 11 10 9 27 27 H 1.08997 * 109.47442 * 59.99964 * 11 10 9 28 28 H 1.09004 * 109.47113 * 184.99738 * 12 11 10 29 29 H 1.08993 * 109.47646 * 305.00069 * 12 11 10 30 30 H 1.09003 * 110.41368 * 319.73716 * 14 13 12 31 31 H 1.09006 * 110.41484 * 82.18226 * 14 13 12 32 32 H 1.09002 * 110.32494 * 264.95949 * 15 14 13 33 33 H 1.09000 * 110.32896 * 142.75055 * 15 14 13 34 34 H 1.08993 * 110.33005 * 241.10559 * 16 15 14 35 35 H 1.09001 * 110.32590 * 118.89342 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.5652 -4.8754 0.0013 12 6 2.6482 -5.9561 0.0020 13 7 3.4074 -5.8877 1.2578 14 6 4.3294 -4.7229 1.2597 15 6 5.3944 -5.0715 2.3215 16 6 5.3778 -6.6111 2.4155 17 6 4.3042 -7.0633 1.4025 18 1 4.7644 -7.3105 0.4458 19 6 3.5273 -8.2631 1.9482 20 9 2.4903 -8.5871 1.0668 21 9 4.3892 -9.3577 2.0760 22 9 2.9920 -7.9418 3.2001 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8903 26 1 0.9442 -4.9823 0.8906 27 1 0.9461 -4.9826 -0.8894 28 1 2.1823 -6.9375 -0.0879 29 1 3.3224 -5.7956 -0.8393 30 1 4.7935 -4.6038 0.2807 31 1 3.7950 -3.8155 1.5410 32 1 5.1293 -4.6308 3.2826 33 1 6.3762 -4.7223 2.0020 34 1 5.1046 -6.9261 3.4226 35 1 6.3515 -7.0177 2.1419 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599599511.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:47 Heat of formation + Delta-G solvation = -221.976970 kcal Electronic energy + Delta-G solvation = -21330.583972 eV Core-core repulsion = 17526.564814 eV Total energy + Delta-G solvation = -3804.019158 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.07559 -48.62575 -48.52235 -40.23320 -38.33181 -35.01415 -33.69898 -31.34704 -29.96588 -28.48550 -26.02712 -24.52667 -23.40010 -22.06997 -21.82413 -19.55534 -19.21475 -18.68987 -18.57454 -17.48796 -17.10992 -16.53264 -16.07218 -15.74012 -15.46928 -15.38972 -15.16131 -15.03488 -14.92210 -14.80837 -14.67940 -14.33620 -13.77645 -13.72175 -13.41227 -12.96194 -12.92458 -12.56159 -12.40280 -12.30253 -12.27200 -12.05366 -11.78803 -11.47916 -11.24325 -10.85107 -10.19896 -9.69884 -8.30581 -6.42769 1.41051 1.43669 1.55539 1.70616 2.35250 2.53729 2.83628 2.96394 3.03800 3.20870 3.42711 3.66175 3.77616 3.93648 4.19638 4.24641 4.27714 4.48592 4.53656 4.63303 4.72971 4.79135 4.90547 4.93580 5.02795 5.18979 5.20217 5.30103 5.56181 5.70485 5.82503 5.97462 6.53937 6.82555 7.29119 8.81933 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.034108 B = 0.004420 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.719387 B = 6333.610686 C = 6820.648201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.211 3.789 10 O -0.395 6.395 11 C 0.060 3.940 12 C 0.046 3.954 13 N -0.513 5.513 14 C 0.047 3.953 15 C -0.118 4.118 16 C -0.111 4.111 17 C 0.011 3.989 18 H 0.115 0.885 19 C 0.466 3.534 20 F -0.189 7.189 21 F -0.179 7.179 22 F -0.183 7.183 23 H 0.269 0.731 24 H -0.017 1.017 25 H -0.020 1.020 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.648 -16.211 3.152 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.083 0.917 9 C 0.135 3.865 10 O -0.315 6.315 11 C -0.017 4.017 12 C -0.082 4.082 13 N -0.238 5.238 14 C -0.080 4.080 15 C -0.156 4.156 16 C -0.149 4.149 17 C -0.099 4.099 18 H 0.133 0.867 19 C 0.411 3.589 20 F -0.170 7.170 21 F -0.161 7.161 22 F -0.164 7.164 23 H 0.078 0.922 24 H 0.000 1.000 25 H -0.002 1.002 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.264 -16.069 3.586 19.949 hybrid contribution -0.362 0.545 -0.677 0.942 sum 10.902 -15.524 2.909 19.191 Atomic orbital electron populations 1.70084 1.07882 1.28555 1.50733 1.25965 0.95885 1.03432 0.94037 0.85192 0.78450 0.77076 0.78759 1.19377 1.20272 1.18574 1.21354 0.94108 0.90556 1.51851 0.91668 1.19774 0.88689 0.84894 0.93100 1.87820 1.34757 1.13829 1.95094 1.22455 0.95582 0.84112 0.99539 1.22549 0.96170 0.98858 0.90648 1.65153 1.22161 1.01644 1.34816 1.23074 0.92760 0.93336 0.98805 1.22330 0.99103 0.94900 0.99282 1.22372 0.97843 0.96305 0.98339 1.23926 0.93632 0.89699 1.02648 0.86749 1.20465 0.77997 0.84561 0.75883 1.93099 1.61315 1.93613 1.68978 1.93178 1.69790 1.57217 1.95910 1.93164 1.87174 1.92688 1.43410 0.92170 0.99954 1.00234 0.94475 0.93119 0.87294 0.92594 0.93248 0.91021 0.91012 0.88761 0.90080 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.03 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.98 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.54 -31.69 9.43 25.60 0.24 -31.45 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 11.79 5.69 71.24 0.41 12.20 16 10 O -0.40 -18.63 7.81 -148.98 -1.16 -19.79 16 11 C 0.06 2.28 6.26 71.98 0.45 2.73 16 12 C 0.05 1.33 5.29 86.30 0.46 1.78 16 13 N -0.51 -14.66 4.97 -856.71 -4.26 -18.91 16 14 C 0.05 1.39 5.34 86.45 0.46 1.85 16 15 C -0.12 -2.49 7.00 31.49 0.22 -2.27 16 16 C -0.11 -1.94 6.35 31.49 0.20 -1.74 16 17 C 0.01 0.24 2.36 45.06 0.11 0.34 16 18 H 0.11 1.95 8.00 -2.39 -0.02 1.93 16 19 C 0.47 10.55 2.85 71.98 0.20 10.76 16 20 F -0.19 -4.60 14.89 44.97 0.67 -3.93 16 21 F -0.18 -3.66 17.18 44.97 0.77 -2.89 16 22 F -0.18 -4.83 16.37 44.97 0.74 -4.09 16 23 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 24 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 25 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.11 2.77 5.71 -2.38 -0.01 2.76 16 29 H 0.06 1.55 7.77 -2.39 -0.02 1.53 16 30 H 0.05 1.44 7.75 -2.39 -0.02 1.42 16 31 H 0.07 2.74 6.83 -2.38 -0.02 2.72 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.47 7.19 -2.39 -0.02 1.45 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.41 297.76 3.37 -62.04 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.09 Total: 2.72 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 3.21 Total: -5.05 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -3.97 Total: -74.95 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -1.16 Total: -19.79 kcal Atomic # 9 Polarization: -13.09 SS G_CDS: 2.18 Total: -10.91 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -65.41 3.37 -62.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599599511.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.936 kcal (2) G-P(sol) polarization free energy of solvation -65.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds