Wall clock time and date at job start Mon Mar 30 2020 04:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48499 * 109.46876 * 269.99638 * 3 2 1 5 5 H 1.48502 * 109.46803 * 29.99726 * 3 2 1 6 6 H 1.48494 * 109.46778 * 149.99838 * 3 2 1 7 7 C 1.37875 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00586 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99708 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47305 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47559 * 179.97438 * 11 10 9 13 13 C 1.47012 * 110.99805 * 62.97493 * 12 11 10 14 14 C 1.53093 * 109.25990 * 182.39514 * 13 12 11 15 15 O 1.43023 * 109.25837 * 303.15341 * 14 13 12 16 16 C 1.43012 * 113.73707 * 58.66826 * 15 14 13 17 17 C 1.47009 * 111.00484 * 186.61188 * 12 11 10 18 18 H 1.08998 * 109.50595 * 297.54198 * 17 12 11 19 19 C 1.53003 * 109.50578 * 57.67420 * 17 12 11 20 20 F 1.39893 * 109.47240 * 53.14732 * 19 17 12 21 21 F 1.39898 * 109.47287 * 173.15204 * 19 17 12 22 22 F 1.39901 * 109.46778 * 293.15076 * 19 17 12 23 23 H 0.97000 * 120.00076 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47125 * 59.99756 * 9 7 2 25 25 H 1.08999 * 109.47221 * 300.00458 * 9 7 2 26 26 H 1.08994 * 109.46876 * 60.00273 * 10 9 7 27 27 H 1.09003 * 109.47211 * 299.99929 * 10 9 7 28 28 H 1.09005 * 109.47106 * 59.99799 * 11 10 9 29 29 H 1.08999 * 109.47187 * 300.00533 * 11 10 9 30 30 H 1.08997 * 109.50836 * 302.33033 * 13 12 11 31 31 H 1.08999 * 109.50960 * 62.46222 * 13 12 11 32 32 H 1.09001 * 109.50968 * 63.08574 * 14 13 12 33 33 H 1.09003 * 109.51417 * 183.21864 * 14 13 12 34 34 H 1.08998 * 109.50639 * 61.26601 * 16 15 14 35 35 H 1.09000 * 109.50822 * 181.39592 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0035 12 7 6.0413 -4.0214 0.0053 13 6 5.6300 -4.7272 -1.2170 14 6 6.1087 -6.1797 -1.1468 15 8 7.5266 -6.2006 -0.9606 16 6 7.9621 -5.5227 0.2209 17 6 7.5022 -4.0636 0.1645 18 1 7.9750 -3.5654 -0.6818 19 6 7.8954 -3.3535 1.4615 20 9 7.1698 -3.8949 2.5280 21 9 9.2641 -3.5280 1.6922 22 9 7.6117 -1.9881 1.3500 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 3.6586 -3.1509 -0.8875 27 1 3.6579 -3.1498 0.8925 28 1 5.9142 -2.1222 0.8935 29 1 5.9156 -2.1231 -0.8864 30 1 4.5435 -4.7058 -1.3016 31 1 6.0729 -4.2396 -2.0854 32 1 5.6243 -6.6826 -0.3098 33 1 5.8560 -6.6916 -2.0754 34 1 7.5316 -6.0064 1.0976 35 1 9.0498 -5.5594 0.2815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611179209.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:45 Heat of formation + Delta-G solvation = -192.565514 kcal Electronic energy + Delta-G solvation = -21639.219451 eV Core-core repulsion = 17836.475669 eV Total energy + Delta-G solvation = -3802.743782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.28683 -47.85722 -47.61174 -39.88888 -36.49693 -33.81636 -32.35848 -31.47530 -28.63548 -26.35861 -25.81206 -23.28896 -22.39303 -20.79316 -20.05676 -18.65614 -18.57045 -17.86391 -16.75825 -16.32892 -16.20159 -15.37121 -15.19033 -14.72189 -14.47247 -14.44162 -14.30932 -14.02816 -13.88807 -13.81546 -13.76579 -13.57609 -12.64999 -12.50802 -12.04461 -11.82408 -11.71488 -11.56100 -11.02630 -10.82418 -10.56833 -10.06033 -9.97416 -9.71224 -9.59715 -9.18892 -8.61315 -8.54314 -6.05049 -4.03120 2.49065 3.28693 3.30002 3.37803 3.41627 3.42048 3.75804 3.79625 4.22900 4.44746 4.52271 4.71098 4.77377 4.93418 5.07186 5.28530 5.30269 5.34134 5.49729 5.60885 5.67274 5.73433 6.07084 6.35226 6.40831 6.66085 6.75999 6.88288 6.91816 7.28943 7.40996 7.78340 8.53064 8.99777 9.57547 11.08393 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.005367 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.391737 B = 5216.175136 C = 5988.755181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.094 4.094 11 C 0.018 3.982 12 N -0.523 5.523 13 C 0.018 3.982 14 C 0.058 3.942 15 O -0.375 6.375 16 C 0.071 3.929 17 C 0.000 4.000 18 H 0.090 0.910 19 C 0.463 3.537 20 F -0.167 7.167 21 F -0.183 7.183 22 F -0.173 7.173 23 H 0.263 0.737 24 H 0.017 0.983 25 H 0.009 0.991 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.134 -10.785 -0.290 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.132 4.132 11 C -0.108 4.108 12 N -0.249 5.249 13 C -0.110 4.110 14 C -0.019 4.019 15 O -0.293 6.293 16 C -0.006 4.006 17 C -0.111 4.111 18 H 0.108 0.892 19 C 0.408 3.592 20 F -0.148 7.148 21 F -0.165 7.165 22 F -0.154 7.154 23 H 0.073 0.927 24 H 0.035 0.965 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.055 0.945 30 H 0.125 0.875 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.896 -10.986 0.009 20.999 hybrid contribution 0.512 1.783 -0.346 1.887 sum 18.409 -9.203 -0.337 20.584 Atomic orbital electron populations 1.69916 1.06286 1.26877 1.51200 1.25028 0.94724 0.99152 0.94569 0.86789 0.80448 0.83675 0.78465 1.20359 1.21338 1.18968 1.21112 0.89375 0.94473 1.50756 0.91001 1.19542 0.97242 0.92017 0.96238 1.21471 0.90078 0.99985 1.01692 1.23113 0.99205 0.85896 1.02561 1.62368 1.05881 1.18237 1.38402 1.22920 1.03337 0.94473 0.90238 1.22841 0.80658 0.95601 1.02775 1.88022 1.23077 1.75163 1.43044 1.22615 1.00525 0.87775 0.89704 1.23480 0.93942 0.99723 0.94001 0.89187 1.20249 0.74364 0.77500 0.87096 1.93221 1.77376 1.85429 1.58813 1.93172 1.32615 1.95196 1.95474 1.93102 1.92260 1.33872 1.96190 0.92741 0.96520 0.97246 0.92789 0.91736 0.88450 0.94489 0.87502 0.93411 0.91586 0.87807 0.90890 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.09 -1.84 5.00 -26.73 -0.13 -1.97 16 11 C 0.02 0.30 4.35 -3.82 -0.02 0.28 16 12 N -0.52 -7.13 4.37 -226.35 -0.99 -8.12 16 13 C 0.02 0.21 5.39 -3.71 -0.02 0.19 16 14 C 0.06 0.58 7.01 37.21 0.26 0.84 16 15 O -0.38 -4.16 10.83 -35.23 -0.38 -4.54 16 16 C 0.07 0.72 6.00 37.21 0.22 0.94 16 17 C 0.00 0.00 2.11 -67.60 -0.14 -0.15 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 19 C 0.46 5.75 2.52 37.16 0.09 5.85 16 20 F -0.17 -2.30 16.81 2.25 0.04 -2.26 16 21 F -0.18 -2.05 16.61 2.25 0.04 -2.01 16 22 F -0.17 -2.44 14.00 2.25 0.03 -2.41 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 25 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 26 H 0.05 1.02 6.42 -51.93 -0.33 0.68 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.10 1.64 4.89 -51.93 -0.25 1.39 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.11 1.32 6.27 -51.93 -0.33 1.00 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 35 H 0.11 0.88 7.76 -51.93 -0.40 0.47 16 LS Contribution 289.55 15.07 4.36 4.36 Total: -1.00 -30.94 289.55 -5.69 -36.63 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -4.62 Total: -3.91 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.28 Total: -7.75 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.22 Total: -35.35 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.38 Total: -4.54 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.68 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.94 -5.69 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611179209.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.932 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds