Wall clock time and date at job start Mon Mar 30 2020 04:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48499 * 109.46876 * 269.99638 * 3 2 1 5 5 H 1.48502 * 109.46803 * 29.99726 * 3 2 1 6 6 H 1.48494 * 109.46778 * 149.99838 * 3 2 1 7 7 C 1.37875 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00586 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99708 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47305 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47559 * 179.97438 * 11 10 9 13 13 C 1.47012 * 110.99805 * 62.97493 * 12 11 10 14 14 C 1.53093 * 109.25990 * 182.39514 * 13 12 11 15 15 O 1.43023 * 109.25837 * 303.15341 * 14 13 12 16 16 C 1.43012 * 113.73707 * 58.66826 * 15 14 13 17 17 C 1.47009 * 111.00484 * 186.61188 * 12 11 10 18 18 H 1.08998 * 109.50595 * 297.54198 * 17 12 11 19 19 C 1.53003 * 109.50578 * 57.67420 * 17 12 11 20 20 F 1.39893 * 109.47240 * 53.14732 * 19 17 12 21 21 F 1.39898 * 109.47287 * 173.15204 * 19 17 12 22 22 F 1.39901 * 109.46778 * 293.15076 * 19 17 12 23 23 H 0.97000 * 120.00076 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47125 * 59.99756 * 9 7 2 25 25 H 1.08999 * 109.47221 * 300.00458 * 9 7 2 26 26 H 1.08994 * 109.46876 * 60.00273 * 10 9 7 27 27 H 1.09003 * 109.47211 * 299.99929 * 10 9 7 28 28 H 1.09005 * 109.47106 * 59.99799 * 11 10 9 29 29 H 1.08999 * 109.47187 * 300.00533 * 11 10 9 30 30 H 1.08997 * 109.50836 * 302.33033 * 13 12 11 31 31 H 1.08999 * 109.50960 * 62.46222 * 13 12 11 32 32 H 1.09001 * 109.50968 * 63.08574 * 14 13 12 33 33 H 1.09003 * 109.51417 * 183.21864 * 14 13 12 34 34 H 1.08998 * 109.50639 * 61.26601 * 16 15 14 35 35 H 1.09000 * 109.50822 * 181.39592 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0035 12 7 6.0413 -4.0214 0.0053 13 6 5.6300 -4.7272 -1.2170 14 6 6.1087 -6.1797 -1.1468 15 8 7.5266 -6.2006 -0.9606 16 6 7.9621 -5.5227 0.2209 17 6 7.5022 -4.0636 0.1645 18 1 7.9750 -3.5654 -0.6818 19 6 7.8954 -3.3535 1.4615 20 9 7.1698 -3.8949 2.5280 21 9 9.2641 -3.5280 1.6922 22 9 7.6117 -1.9881 1.3500 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6800 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 3.6586 -3.1509 -0.8875 27 1 3.6579 -3.1498 0.8925 28 1 5.9142 -2.1222 0.8935 29 1 5.9156 -2.1231 -0.8864 30 1 4.5435 -4.7058 -1.3016 31 1 6.0729 -4.2396 -2.0854 32 1 5.6243 -6.6826 -0.3098 33 1 5.8560 -6.6916 -2.0754 34 1 7.5316 -6.0064 1.0976 35 1 9.0498 -5.5594 0.2815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611179209.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:45 Heat of formation + Delta-G solvation = -213.829643 kcal Electronic energy + Delta-G solvation = -21640.141532 eV Core-core repulsion = 17836.475669 eV Total energy + Delta-G solvation = -3803.665864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.27813 -48.84254 -48.61863 -40.81228 -37.61296 -35.58870 -33.84051 -32.84641 -30.02532 -27.55492 -27.04458 -24.22709 -24.01064 -21.88310 -21.59682 -19.64784 -19.55775 -19.04260 -18.69756 -17.22018 -17.14902 -16.45844 -16.32746 -16.16978 -15.75762 -15.43256 -15.37438 -15.19742 -15.02181 -14.94945 -14.82494 -14.75748 -14.64465 -13.73013 -13.52607 -13.16509 -12.95139 -12.71425 -12.51805 -12.19458 -11.86161 -11.72416 -11.56632 -11.45170 -11.17947 -10.83649 -10.76861 -9.66011 -8.30462 -6.34500 1.34049 1.36665 1.48546 1.53927 2.27910 2.35012 2.51658 2.82833 2.94786 3.04900 3.25966 3.61358 3.82296 3.86378 4.00335 4.15809 4.27937 4.32672 4.54491 4.58520 4.61415 4.68247 4.85701 4.89926 4.91361 5.07909 5.43093 5.53189 5.62329 5.69741 5.72474 5.96730 6.27759 6.73433 7.30202 8.86339 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.005367 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.391737 B = 5216.175136 C = 5988.755181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.531 4.531 8 H 0.033 0.967 9 C -0.010 4.010 10 C -0.085 4.085 11 C 0.031 3.969 12 N -0.533 5.533 13 C 0.016 3.984 14 C 0.061 3.939 15 O -0.381 6.381 16 C 0.073 3.927 17 C 0.003 3.997 18 H 0.102 0.898 19 C 0.463 3.537 20 F -0.177 7.177 21 F -0.174 7.174 22 F -0.183 7.183 23 H 0.266 0.734 24 H 0.016 0.984 25 H 0.019 0.981 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.507 -10.686 -0.781 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.569 4.569 8 H 0.051 0.949 9 C -0.048 4.048 10 C -0.123 4.123 11 C -0.096 4.096 12 N -0.259 5.259 13 C -0.111 4.111 14 C -0.015 4.015 15 O -0.299 6.299 16 C -0.005 4.005 17 C -0.108 4.108 18 H 0.120 0.880 19 C 0.408 3.592 20 F -0.158 7.158 21 F -0.155 7.155 22 F -0.165 7.165 23 H 0.075 0.925 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.288 -10.912 -0.484 23.041 hybrid contribution -0.270 1.656 -0.181 1.688 sum 20.017 -9.256 -0.665 22.064 Atomic orbital electron populations 1.70069 1.08265 1.28152 1.52706 1.26010 0.95607 1.03480 0.94139 0.85675 0.79481 0.78349 0.79274 1.18972 1.20930 1.17218 1.21472 0.92035 0.93131 1.50291 0.94887 1.19482 0.93982 0.94942 0.96396 1.21261 0.92783 0.97062 1.01146 1.22820 0.96415 0.87720 1.02666 1.62260 1.07529 1.16576 1.39554 1.22982 1.02879 0.95619 0.89620 1.22910 0.80266 0.94311 1.04030 1.88024 1.23420 1.75118 1.43375 1.22743 1.01850 0.86403 0.89465 1.23573 0.92460 1.00973 0.93775 0.88022 1.20381 0.74639 0.77009 0.87173 1.93203 1.77727 1.85507 1.59395 1.93189 1.31823 1.95087 1.95444 1.93077 1.92380 1.34792 1.96227 0.92488 0.96548 0.96288 0.92560 0.93193 0.88947 0.93833 0.88463 0.92978 0.91557 0.85552 0.90904 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 44.70 27.47 68.60 1.88 46.59 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.97 6.54 99.48 0.65 -10.31 16 7 C -0.53 -30.97 9.66 25.60 0.25 -30.72 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.08 -3.27 5.00 30.59 0.15 -3.12 16 11 C 0.03 0.95 4.35 86.30 0.38 1.32 16 12 N -0.53 -13.66 4.37 -870.03 -3.80 -17.47 16 13 C 0.02 0.35 5.39 86.31 0.47 0.82 16 14 C 0.06 1.09 7.01 72.01 0.50 1.59 16 15 O -0.38 -7.39 10.83 -148.98 -1.61 -9.00 16 16 C 0.07 1.27 6.00 72.01 0.43 1.70 16 17 C 0.00 0.06 2.11 44.93 0.09 0.16 16 18 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 19 C 0.46 10.62 2.52 71.98 0.18 10.81 16 20 F -0.18 -4.63 16.81 44.97 0.76 -3.87 16 21 F -0.17 -3.49 16.61 44.97 0.75 -2.74 16 22 F -0.18 -4.86 14.00 44.97 0.63 -4.23 16 23 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 24 H 0.02 0.77 7.20 -2.38 -0.02 0.75 16 25 H 0.02 0.85 7.57 -2.39 -0.02 0.84 16 26 H 0.06 2.12 6.42 -2.39 -0.02 2.10 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 28 H 0.09 2.98 4.89 -2.38 -0.01 2.97 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 2.32 6.27 -2.39 -0.01 2.31 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.29 7.91 -2.39 -0.02 1.27 16 35 H 0.13 1.69 7.76 -2.39 -0.02 1.67 16 Total: -1.00 -66.54 289.55 2.98 -63.56 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 1.04 Total: 4.15 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 3.04 Total: -17.07 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.50 Total: -77.38 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.61 Total: -9.00 kcal Atomic # 9 Polarization: -12.98 SS G_CDS: 2.13 Total: -10.85 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -66.54 2.98 -63.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611179209.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.267 kcal (2) G-P(sol) polarization free energy of solvation -66.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds