Wall clock time and date at job start Mon Mar 30 2020 04:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99966 * 2 1 4 4 H 1.48505 * 109.47060 * 239.99994 * 3 2 1 5 5 H 1.48492 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47141 * 120.00364 * 3 2 1 7 7 C 1.37876 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00250 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99955 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47094 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.47019 * 111.00103 * 69.44279 * 12 11 10 14 14 C 1.53093 * 109.26014 * 177.60884 * 13 12 11 15 15 O 1.43012 * 109.26050 * 56.84763 * 14 13 12 16 16 C 1.43012 * 113.74225 * 301.33138 * 15 14 13 17 17 C 1.47016 * 111.00244 * 305.80768 * 12 11 10 18 18 H 1.09008 * 109.50346 * 62.45447 * 17 12 11 19 19 C 1.52995 * 109.54157 * 302.34881 * 17 12 11 20 20 F 1.39890 * 109.47221 * 306.14624 * 19 17 12 21 21 F 1.39907 * 109.47020 * 66.14655 * 19 17 12 22 22 F 1.39900 * 109.46992 * 186.14430 * 19 17 12 23 23 H 0.97004 * 119.99635 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47192 * 60.00053 * 9 7 2 25 25 H 1.09001 * 109.46993 * 299.99870 * 9 7 2 26 26 H 1.09000 * 109.47094 * 59.99850 * 10 9 7 27 27 H 1.08999 * 109.47143 * 300.00254 * 10 9 7 28 28 H 1.09000 * 109.47177 * 60.00018 * 11 10 9 29 29 H 1.08998 * 109.47578 * 299.99424 * 11 10 9 30 30 H 1.09004 * 109.50137 * 57.67319 * 13 12 11 31 31 H 1.09001 * 109.54193 * 297.57063 * 13 12 11 32 32 H 1.08998 * 109.50574 * 296.91160 * 14 13 12 33 33 H 1.08999 * 109.50736 * 176.78747 * 14 13 12 34 34 H 1.09002 * 109.50954 * 298.73794 * 16 15 14 35 35 H 1.08996 * 109.54913 * 178.62679 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9870 0.0001 12 7 2.4347 -6.1036 -0.0005 13 6 3.1444 -6.1909 1.2841 14 6 4.0828 -7.4003 1.2616 15 8 4.9801 -7.2806 0.1544 16 6 4.3227 -7.1940 -1.1127 17 6 3.3867 -5.9824 -1.1143 18 1 3.9717 -5.0703 -0.9954 19 6 2.6215 -5.9296 -2.4381 20 9 1.7667 -7.0334 -2.5269 21 9 1.8692 -4.7514 -2.4952 22 9 3.5289 -5.9556 -3.5026 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8905 28 1 0.8532 -5.0450 -0.8896 29 1 0.8539 -5.0446 0.8903 30 1 2.4217 -6.3059 2.0920 31 1 3.7254 -5.2822 1.4421 32 1 3.4969 -8.3136 1.1582 33 1 4.6528 -7.4360 2.1899 34 1 3.7438 -8.1012 -1.2853 35 1 5.0658 -7.0808 -1.9021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611179210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:48 Heat of formation + Delta-G solvation = -216.712823 kcal Electronic energy + Delta-G solvation = -22017.646949 eV Core-core repulsion = 18213.856061 eV Total energy + Delta-G solvation = -3803.790888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.21957 -48.75924 -48.59391 -40.90765 -37.71857 -35.51467 -33.38165 -32.90483 -29.74893 -27.50450 -26.84005 -24.44106 -24.09731 -22.86525 -20.96985 -19.60407 -19.49073 -18.79448 -18.33315 -17.36371 -17.15146 -16.56653 -16.37211 -15.99435 -15.77683 -15.42648 -15.25778 -15.18718 -14.99880 -14.91455 -14.75565 -14.60520 -14.19032 -13.75964 -13.42273 -13.01208 -12.78970 -12.70896 -12.56179 -12.52914 -12.20010 -11.85523 -11.44505 -11.38399 -11.27561 -10.85259 -10.57756 -9.56099 -8.22499 -6.34391 1.36762 1.39566 1.47647 1.59132 2.34365 2.38353 2.54595 2.88306 2.98134 3.10084 3.29314 3.65239 3.83765 3.87828 4.04440 4.21577 4.25725 4.31295 4.52616 4.56949 4.59491 4.75898 4.84675 4.92236 5.06294 5.16579 5.44756 5.56449 5.66864 5.74056 5.80852 5.99255 6.20973 6.81818 7.34876 8.88615 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.005675 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.947820 B = 4932.434145 C = 5384.566707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.034 3.966 10 C -0.126 4.126 11 C 0.042 3.958 12 N -0.519 5.519 13 C 0.013 3.987 14 C 0.061 3.939 15 O -0.385 6.385 16 C 0.076 3.924 17 C -0.004 4.004 18 H 0.090 0.910 19 C 0.461 3.539 20 F -0.174 7.174 21 F -0.185 7.185 22 F -0.178 7.178 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.006 1.006 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 -16.898 -0.395 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.164 4.164 11 C -0.085 4.085 12 N -0.244 5.244 13 C -0.114 4.114 14 C -0.015 4.015 15 O -0.303 6.303 16 C -0.002 4.002 17 C -0.115 4.115 18 H 0.108 0.892 19 C 0.406 3.594 20 F -0.155 7.155 21 F -0.166 7.166 22 F -0.160 7.160 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.012 0.988 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.144 0.856 34 H 0.099 0.901 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.184 -17.249 -0.452 19.097 hybrid contribution -0.143 2.098 -0.274 2.120 sum 8.041 -15.151 -0.726 17.168 Atomic orbital electron populations 1.70084 1.07743 1.27868 1.51444 1.25956 0.95765 1.03271 0.94658 0.85547 0.78369 0.78282 0.79157 1.19388 1.20614 1.19049 1.21647 0.93323 0.92584 1.50863 0.92617 1.18836 0.94140 0.92652 0.94785 1.22009 0.98915 0.95363 1.00156 1.22574 0.94870 0.87278 1.03819 1.62654 1.15696 1.43158 1.02860 1.23025 0.98096 0.99429 0.90895 1.22955 0.91785 0.96539 0.90228 1.88022 1.33476 1.94054 1.14730 1.22711 0.95353 0.94385 0.87706 1.23580 0.94689 1.04500 0.88691 0.89212 1.20382 0.78301 0.73560 0.87149 1.93174 1.72055 1.53551 1.96720 1.93228 1.77738 1.49037 1.96621 1.93171 1.66939 1.96210 1.59671 0.92701 0.99206 0.98756 0.92934 0.93396 0.90520 0.89605 0.87261 0.93887 0.90704 0.85553 0.90135 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.03 1.79 4.97 29.85 0.15 1.93 16 10 C -0.13 -5.11 3.90 30.59 0.12 -4.99 16 11 C 0.04 1.41 4.74 86.30 0.41 1.82 16 12 N -0.52 -14.02 4.57 -869.99 -3.98 -17.99 16 13 C 0.01 0.28 5.38 86.31 0.46 0.75 16 14 C 0.06 1.07 7.01 72.01 0.50 1.58 16 15 O -0.38 -8.31 10.83 -148.98 -1.61 -9.92 16 16 C 0.08 1.56 6.01 72.02 0.43 1.99 16 17 C 0.00 -0.10 1.64 44.93 0.07 -0.02 16 18 H 0.09 2.59 6.37 -2.38 -0.02 2.57 16 19 C 0.46 13.17 2.52 71.98 0.18 13.35 16 20 F -0.17 -4.85 16.80 44.97 0.76 -4.10 16 21 F -0.18 -6.60 12.65 44.97 0.57 -6.04 16 22 F -0.18 -4.72 16.63 44.97 0.75 -3.97 16 23 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.05 2.07 6.72 -2.39 -0.02 2.06 16 27 H 0.05 1.97 5.24 -2.39 -0.01 1.96 16 28 H 0.08 2.78 5.82 -2.39 -0.01 2.77 16 29 H 0.09 2.78 8.05 -2.39 -0.02 2.77 16 30 H 0.11 2.13 8.09 -2.38 -0.02 2.11 16 31 H 0.04 1.09 6.71 -2.39 -0.02 1.08 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.51 7.89 -2.39 -0.02 1.49 16 35 H 0.12 2.14 7.77 -2.39 -0.02 2.12 16 Total: -1.00 -65.82 287.64 2.92 -62.90 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.10 Total: 3.77 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 3.03 Total: -14.39 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -3.69 Total: -75.00 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -1.61 Total: -9.92 kcal Atomic # 9 Polarization: -16.18 SS G_CDS: 2.07 Total: -14.10 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.82 2.92 -62.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611179210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.812 kcal (2) G-P(sol) polarization free energy of solvation -65.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds