Wall clock time and date at job start Mon Mar 30 2020 04:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00179 * 2 1 4 4 H 1.48499 * 109.46896 * 269.99522 * 3 2 1 5 5 H 1.48496 * 109.46922 * 30.00138 * 3 2 1 6 6 H 1.48504 * 109.46936 * 150.00071 * 3 2 1 7 7 C 1.38811 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99848 * 201.77954 * 7 2 1 9 9 N 1.36939 * 120.00409 * 21.78123 * 7 2 1 10 10 C 1.46500 * 120.00133 * 183.67840 * 9 7 2 11 11 C 1.52998 * 109.47501 * 263.70590 * 10 9 7 12 12 H 1.08998 * 109.57129 * 307.31018 * 11 10 9 13 13 C 1.53176 * 109.52209 * 187.15330 * 11 10 9 14 14 C 1.53177 * 109.03288 * 183.11187 * 13 11 10 15 15 C 1.53092 * 109.16560 * 56.97830 * 14 13 11 16 16 O 1.42900 * 109.41550 * 302.39288 * 15 14 13 17 17 C 1.42900 * 114.09759 * 61.15537 * 16 15 14 18 18 C 1.46499 * 119.99701 * 3.68333 * 9 7 2 19 19 C 1.53003 * 109.46777 * 263.60847 * 18 9 7 20 20 F 1.39895 * 109.47227 * 53.46003 * 19 18 9 21 21 F 1.39907 * 109.46876 * 173.45525 * 19 18 9 22 22 F 1.39896 * 109.47388 * 293.45626 * 19 18 9 23 23 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46908 * 143.70433 * 10 9 7 25 25 H 1.09001 * 109.47047 * 23.70588 * 10 9 7 26 26 H 1.08994 * 109.54263 * 302.97447 * 13 11 10 27 27 H 1.09001 * 109.54271 * 63.24405 * 13 11 10 28 28 H 1.09006 * 109.52419 * 176.88358 * 14 13 11 29 29 H 1.09001 * 109.52131 * 297.01006 * 14 13 11 30 30 H 1.09001 * 109.47827 * 62.37531 * 15 14 13 31 31 H 1.08997 * 109.48348 * 182.39435 * 15 14 13 32 32 H 1.09005 * 109.47825 * 178.85841 * 17 16 15 33 33 H 1.08992 * 109.48355 * 58.82949 * 17 16 15 34 34 H 1.09006 * 109.47215 * 23.60876 * 18 9 7 35 35 H 1.09002 * 109.47240 * 143.60971 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0324 -1.2355 0.3476 9 7 1.3987 -2.3460 -0.4390 10 6 2.1029 -3.6285 -0.3633 11 6 2.7592 -3.9304 -1.7119 12 1 2.0156 -3.8541 -2.5052 13 6 3.3427 -5.3465 -1.6916 14 6 4.0640 -5.6086 -3.0173 15 6 5.1403 -4.5397 -3.2237 16 8 4.5349 -3.2455 -3.2012 17 6 3.8859 -2.9262 -1.9688 18 6 0.0406 -2.2871 -0.9850 19 6 -0.9657 -2.6423 0.1115 20 9 -0.7476 -1.8263 1.2267 21 9 -2.2655 -2.4421 -0.3658 22 9 -0.8041 -3.9832 0.4761 23 1 -0.4850 0.8401 -0.0004 24 1 1.3929 -4.4188 -0.1197 25 1 2.8691 -3.5772 0.4103 26 1 4.0501 -5.4376 -0.8674 27 1 2.5379 -6.0707 -1.5650 28 1 4.5297 -6.5939 -2.9900 29 1 3.3465 -5.5674 -3.8367 30 1 5.8794 -4.6092 -2.4256 31 1 5.6283 -4.6962 -4.1857 32 1 3.4701 -1.9203 -2.0268 33 1 4.6085 -2.9745 -1.1543 34 1 -0.1607 -1.2801 -1.3506 35 1 -0.0518 -2.9972 -1.8068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685984289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:00 Heat of formation + Delta-G solvation = -179.938332 kcal Electronic energy + Delta-G solvation = -22230.911085 eV Core-core repulsion = 18428.714858 eV Total energy + Delta-G solvation = -3802.196226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.52846 -46.23697 -45.72106 -39.06569 -36.17948 -33.58652 -31.85924 -30.42679 -27.97498 -25.84504 -24.59455 -23.27048 -22.04449 -20.51816 -19.56681 -17.61471 -16.93417 -16.69412 -15.90753 -15.68592 -15.40037 -15.01070 -14.46425 -14.15165 -13.81897 -13.44883 -13.01475 -12.91681 -12.76287 -12.57210 -12.36669 -12.21986 -12.06350 -11.96715 -11.60619 -11.25481 -11.04990 -10.88569 -10.73013 -10.59302 -10.38548 -10.28889 -10.09371 -10.03113 -9.75928 -9.04951 -8.63674 -7.17901 -5.92217 -3.29916 3.34080 3.41914 3.43074 4.26919 4.31230 4.41348 4.92689 5.03448 5.09940 5.22982 5.27727 5.37646 5.50780 5.59370 5.73965 5.76642 5.82614 5.93337 5.99237 6.09341 6.12523 6.18575 6.28558 6.41618 6.55365 6.63554 6.79111 6.88891 7.31493 7.59078 7.61974 8.11237 8.95534 9.60964 10.01919 11.10196 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.008600 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.655841 B = 3255.178564 C = 4564.278709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.001 3.999 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.259 4.259 8 H 0.084 0.916 9 N -0.582 5.582 10 C 0.148 3.852 11 C -0.138 4.138 12 H 0.073 0.927 13 C -0.117 4.117 14 C -0.153 4.153 15 C 0.060 3.940 16 O -0.389 6.389 17 C 0.072 3.928 18 C 0.121 3.879 19 C 0.425 3.575 20 F -0.152 7.152 21 F -0.215 7.215 22 F -0.224 7.224 23 H 0.259 0.741 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.040 0.960 34 H 0.150 0.850 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -8.367 -3.926 10.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.196 4.196 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.387 4.387 8 H 0.101 0.899 9 N -0.300 5.300 10 C 0.021 3.979 11 C -0.159 4.159 12 H 0.091 0.909 13 C -0.155 4.155 14 C -0.191 4.191 15 C -0.017 4.017 16 O -0.308 6.308 17 C -0.004 4.004 18 C -0.010 4.010 19 C 0.368 3.632 20 F -0.133 7.133 21 F -0.197 7.197 22 F -0.206 7.206 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.059 0.941 34 H 0.167 0.833 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.505 -8.074 -4.010 10.078 hybrid contribution 0.096 0.455 0.612 0.768 sum 4.601 -7.619 -3.398 9.527 Atomic orbital electron populations 1.70036 1.05098 1.25879 1.53053 1.24777 0.95404 0.98295 1.01144 0.86190 0.78999 0.83277 0.77770 1.21248 1.21795 1.20565 1.19320 0.96256 0.84687 1.38462 0.89856 1.44050 1.11088 1.03845 1.71013 1.20930 0.95367 0.87944 0.93658 1.22371 0.98383 0.93758 1.01419 0.90903 1.21607 0.99705 0.97518 0.96663 1.22166 0.99226 0.98834 0.98901 1.22473 0.94168 0.83887 1.01165 1.87934 1.72659 1.32627 1.37582 1.22744 0.92560 1.00431 0.84639 1.22694 0.82552 1.06008 0.89697 1.22618 0.81014 0.72062 0.87539 1.93192 1.94257 1.71784 1.54040 1.93008 1.43068 1.94959 1.88664 1.92997 1.95511 1.38472 1.93606 0.93046 0.93376 0.92692 0.92205 0.91867 0.91677 0.91369 0.93831 0.89837 0.86770 0.94146 0.83274 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 7.42 55.49 0.41 -23.35 16 2 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 3 Si 0.91 20.67 29.61 -169.99 -5.03 15.63 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.26 -6.40 8.08 -15.06 -0.12 -6.52 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.60 16 9 N -0.58 -13.18 2.21 -173.23 -0.38 -13.56 16 10 C 0.15 2.81 5.03 -4.04 -0.02 2.79 16 11 C -0.14 -2.31 2.57 -90.48 -0.23 -2.54 16 12 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 13 C -0.12 -1.59 5.31 -26.55 -0.14 -1.73 16 14 C -0.15 -1.86 6.14 -26.59 -0.16 -2.03 16 15 C 0.06 0.78 6.84 37.21 0.25 1.04 16 16 O -0.39 -6.59 10.77 -35.23 -0.38 -6.97 16 17 C 0.07 1.26 5.75 37.20 0.21 1.47 16 18 C 0.12 2.74 5.11 -4.04 -0.02 2.72 16 19 C 0.43 9.95 3.07 37.16 0.11 10.06 16 20 F -0.15 -4.01 14.29 2.25 0.03 -3.98 16 21 F -0.21 -4.89 17.32 2.25 0.04 -4.85 16 22 F -0.22 -4.95 15.84 2.25 0.04 -4.92 16 23 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 24 H 0.05 0.91 6.72 -51.93 -0.35 0.56 16 25 H 0.05 1.04 7.97 -51.93 -0.41 0.63 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 2.28 6.91 -51.93 -0.36 1.92 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.15 3.73 5.33 -51.93 -0.28 3.45 16 35 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -26.77 287.69 -5.88 -32.64 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.73 Total: -0.19 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.21 Total: 5.22 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.03 Total: -36.92 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.38 Total: -6.97 kcal Atomic # 9 Polarization: -13.86 SS G_CDS: 0.11 Total: -13.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.77 -5.88 -32.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685984289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.297 kcal (2) G-P(sol) polarization free energy of solvation -26.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds