Wall clock time and date at job start Mon Mar 30 2020 04:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00179 * 2 1 4 4 H 1.48499 * 109.46896 * 269.99522 * 3 2 1 5 5 H 1.48496 * 109.46922 * 30.00138 * 3 2 1 6 6 H 1.48504 * 109.46936 * 150.00071 * 3 2 1 7 7 C 1.38811 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99848 * 201.77954 * 7 2 1 9 9 N 1.36939 * 120.00409 * 21.78123 * 7 2 1 10 10 C 1.46500 * 120.00133 * 183.67840 * 9 7 2 11 11 C 1.52998 * 109.47501 * 263.70590 * 10 9 7 12 12 H 1.08998 * 109.57129 * 307.31018 * 11 10 9 13 13 C 1.53176 * 109.52209 * 187.15330 * 11 10 9 14 14 C 1.53177 * 109.03288 * 183.11187 * 13 11 10 15 15 C 1.53092 * 109.16560 * 56.97830 * 14 13 11 16 16 O 1.42900 * 109.41550 * 302.39288 * 15 14 13 17 17 C 1.42900 * 114.09759 * 61.15537 * 16 15 14 18 18 C 1.46499 * 119.99701 * 3.68333 * 9 7 2 19 19 C 1.53003 * 109.46777 * 263.60847 * 18 9 7 20 20 F 1.39895 * 109.47227 * 53.46003 * 19 18 9 21 21 F 1.39907 * 109.46876 * 173.45525 * 19 18 9 22 22 F 1.39896 * 109.47388 * 293.45626 * 19 18 9 23 23 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46908 * 143.70433 * 10 9 7 25 25 H 1.09001 * 109.47047 * 23.70588 * 10 9 7 26 26 H 1.08994 * 109.54263 * 302.97447 * 13 11 10 27 27 H 1.09001 * 109.54271 * 63.24405 * 13 11 10 28 28 H 1.09006 * 109.52419 * 176.88358 * 14 13 11 29 29 H 1.09001 * 109.52131 * 297.01006 * 14 13 11 30 30 H 1.09001 * 109.47827 * 62.37531 * 15 14 13 31 31 H 1.08997 * 109.48348 * 182.39435 * 15 14 13 32 32 H 1.09005 * 109.47825 * 178.85841 * 17 16 15 33 33 H 1.08992 * 109.48355 * 58.82949 * 17 16 15 34 34 H 1.09006 * 109.47215 * 23.60876 * 18 9 7 35 35 H 1.09002 * 109.47240 * 143.60971 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0324 -1.2355 0.3476 9 7 1.3987 -2.3460 -0.4390 10 6 2.1029 -3.6285 -0.3633 11 6 2.7592 -3.9304 -1.7119 12 1 2.0156 -3.8541 -2.5052 13 6 3.3427 -5.3465 -1.6916 14 6 4.0640 -5.6086 -3.0173 15 6 5.1403 -4.5397 -3.2237 16 8 4.5349 -3.2455 -3.2012 17 6 3.8859 -2.9262 -1.9688 18 6 0.0406 -2.2871 -0.9850 19 6 -0.9657 -2.6423 0.1115 20 9 -0.7476 -1.8263 1.2267 21 9 -2.2655 -2.4421 -0.3658 22 9 -0.8041 -3.9832 0.4761 23 1 -0.4850 0.8401 -0.0004 24 1 1.3929 -4.4188 -0.1197 25 1 2.8691 -3.5772 0.4103 26 1 4.0501 -5.4376 -0.8674 27 1 2.5379 -6.0707 -1.5650 28 1 4.5297 -6.5939 -2.9900 29 1 3.3465 -5.5674 -3.8367 30 1 5.8794 -4.6092 -2.4256 31 1 5.6283 -4.6962 -4.1857 32 1 3.4701 -1.9203 -2.0268 33 1 4.6085 -2.9745 -1.1543 34 1 -0.1607 -1.2801 -1.3506 35 1 -0.0518 -2.9972 -1.8068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685984289.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:59 Heat of formation + Delta-G solvation = -194.017596 kcal Electronic energy + Delta-G solvation = -22231.521607 eV Core-core repulsion = 18428.714858 eV Total energy + Delta-G solvation = -3802.806749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.40220 -48.07286 -47.68371 -40.31781 -37.85199 -34.97701 -33.34681 -31.97042 -29.73404 -27.45620 -25.78502 -24.97561 -23.58637 -22.04159 -20.86050 -19.46589 -18.82694 -18.54686 -17.45548 -17.02148 -16.92617 -16.71094 -15.75480 -15.50719 -15.37161 -15.09466 -14.83375 -14.73562 -14.48636 -14.12508 -14.08790 -13.94668 -13.63386 -13.36015 -13.27716 -12.94721 -12.65382 -12.44758 -12.34203 -12.09682 -11.98637 -11.90230 -11.68459 -11.46272 -11.09226 -10.54187 -10.25259 -9.01323 -7.85462 -5.22545 1.51357 1.55828 1.60990 2.46717 2.54354 3.08011 3.24570 3.32531 3.74654 3.88829 3.95938 4.01522 4.05806 4.13732 4.20371 4.40476 4.61255 4.66649 4.75167 4.80284 4.84408 4.97503 5.02444 5.07351 5.19862 5.25245 5.40780 5.47187 5.55554 5.65977 6.23789 6.40774 7.04108 7.74870 8.13929 9.15057 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.008600 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.655841 B = 3255.178564 C = 4564.278709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.044 4.044 3 Si 0.961 3.039 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.255 4.255 8 H 0.085 0.915 9 N -0.592 5.592 10 C 0.148 3.852 11 C -0.128 4.128 12 H 0.058 0.942 13 C -0.114 4.114 14 C -0.148 4.148 15 C 0.051 3.949 16 O -0.410 6.410 17 C 0.080 3.920 18 C 0.125 3.875 19 C 0.426 3.574 20 F -0.172 7.172 21 F -0.212 7.212 22 F -0.215 7.215 23 H 0.251 0.749 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.129 0.871 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.880 -9.971 -4.420 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.239 4.239 3 Si 0.790 3.210 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.383 4.383 8 H 0.103 0.897 9 N -0.310 5.310 10 C 0.022 3.978 11 C -0.149 4.149 12 H 0.077 0.923 13 C -0.152 4.152 14 C -0.186 4.186 15 C -0.025 4.025 16 O -0.330 6.330 17 C 0.003 3.997 18 C -0.006 4.006 19 C 0.368 3.632 20 F -0.153 7.153 21 F -0.194 7.194 22 F -0.197 7.197 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.146 0.854 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.833 -9.709 -4.510 12.192 hybrid contribution -0.271 0.868 0.743 1.175 sum 5.562 -8.841 -3.767 11.104 Atomic orbital electron populations 1.70181 1.05915 1.25571 1.54630 1.25338 0.96008 1.00524 1.02073 0.85358 0.78032 0.80313 0.77250 1.21499 1.22955 1.19890 1.19510 0.96242 0.85453 1.37130 0.89689 1.44213 1.11219 1.04701 1.70864 1.21064 0.95222 0.86342 0.95123 1.22187 0.97710 0.95871 0.99130 0.92319 1.21599 1.00304 0.95182 0.98090 1.22142 0.98788 1.00013 0.97613 1.22782 0.94582 0.82295 1.02886 1.87897 1.72938 1.35067 1.37094 1.22486 0.92906 0.99065 0.85221 1.22556 0.82596 1.05423 0.89988 1.22720 0.81285 0.72082 0.87071 1.93147 1.94430 1.72571 1.55165 1.93008 1.42909 1.94976 1.88528 1.93004 1.95488 1.37691 1.93552 0.93933 0.93065 0.92599 0.91219 0.90899 0.88651 0.91883 0.92721 0.87722 0.90003 0.93658 0.85412 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.33 7.42 21.65 0.16 -49.17 16 2 C -0.04 -2.28 5.06 84.86 0.43 -1.85 16 3 Si 0.96 42.94 29.61 68.60 2.03 44.97 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.25 -12.53 8.08 84.03 0.68 -11.85 16 8 H 0.09 4.08 7.90 -2.91 -0.02 4.06 16 9 N -0.59 -26.56 2.21 -701.98 -1.55 -28.11 16 10 C 0.15 5.44 5.03 86.38 0.43 5.87 16 11 C -0.13 -4.07 2.57 -10.71 -0.03 -4.10 16 12 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 13 C -0.11 -2.74 5.31 30.71 0.16 -2.58 16 14 C -0.15 -3.07 6.14 30.68 0.19 -2.88 16 15 C 0.05 1.17 6.84 72.01 0.49 1.66 16 16 O -0.41 -13.26 10.77 -148.98 -1.60 -14.87 16 17 C 0.08 2.70 5.75 72.01 0.41 3.11 16 18 C 0.13 5.65 5.11 86.38 0.44 6.09 16 19 C 0.43 19.74 3.07 71.98 0.22 19.96 16 20 F -0.17 -9.13 14.29 44.97 0.64 -8.49 16 21 F -0.21 -9.57 17.32 44.97 0.78 -8.79 16 22 F -0.22 -9.27 15.84 44.97 0.71 -8.55 16 23 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 24 H 0.05 1.85 6.72 -2.39 -0.02 1.84 16 25 H 0.06 2.03 7.97 -2.39 -0.02 2.02 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 3.29 6.91 -2.38 -0.02 3.27 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.13 6.47 5.33 -2.38 -0.01 6.46 16 35 H 0.07 2.65 7.91 -2.39 -0.02 2.63 16 Total: -1.00 -56.31 287.69 5.69 -50.62 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 1.09 Total: 8.95 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 3.44 Total: 13.43 kcal Atomic # 7 Polarization: -75.88 SS G_CDS: -1.39 Total: -77.28 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.60 Total: -14.87 kcal Atomic # 9 Polarization: -27.96 SS G_CDS: 2.13 Total: -25.83 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -56.31 5.69 -50.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685984289.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.396 kcal (2) G-P(sol) polarization free energy of solvation -56.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds