Wall clock time and date at job start Mon Mar 30 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47503 * 2 1 4 4 C 1.50706 * 109.47204 * 120.00068 * 2 1 3 5 5 H 1.07998 * 119.99628 * 120.00164 * 4 2 1 6 6 C 1.37871 * 119.99847 * 299.99643 * 4 2 1 7 7 N 1.31523 * 120.00067 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46747 * 90.00527 * 8 6 4 10 10 H 1.48504 * 109.47496 * 210.00106 * 8 6 4 11 11 H 1.48500 * 109.47352 * 330.00459 * 8 6 4 12 12 N 1.46906 * 109.47029 * 239.99825 * 2 1 3 13 13 C 1.46898 * 110.99888 * 306.04751 * 12 2 1 14 14 C 1.46902 * 110.99573 * 70.00117 * 12 2 1 15 15 C 1.50708 * 109.46760 * 169.99885 * 14 12 2 16 16 C 1.31613 * 120.57392 * 114.72676 * 15 14 12 17 17 S 1.77091 * 105.77873 * 179.88850 * 16 15 14 18 18 C 1.77796 * 94.46133 * 0.30916 * 17 16 15 19 19 N 1.30685 * 140.09976 * 179.79621 * 18 17 16 20 20 C 1.46582 * 110.11125 * 180.02562 * 19 18 17 21 21 C 1.53730 * 104.01276 * 359.97438 * 20 19 18 22 22 N 1.36534 * 105.42500 * 359.82498 * 18 17 16 23 23 H 1.08999 * 109.46789 * 60.00096 * 1 2 3 24 24 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46786 * 300.00439 * 1 2 3 26 26 H 0.96995 * 119.99723 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 28 28 H 1.09000 * 109.46674 * 180.02562 * 13 12 2 29 29 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 30 30 H 1.08993 * 109.47196 * 289.99473 * 14 12 2 31 31 H 1.09000 * 109.47010 * 50.00282 * 14 12 2 32 32 H 1.07999 * 127.11268 * 359.97438 * 16 15 14 33 33 H 1.08996 * 110.52179 * 118.63303 * 20 19 18 34 34 H 1.09000 * 110.52044 * 241.23210 * 20 19 18 35 35 H 1.08999 * 110.57762 * 241.43072 * 21 20 19 36 36 H 1.09001 * 110.53243 * 118.59263 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7119 12 7 2.0197 -0.6926 -1.1995 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4774 -0.5163 -3.5795 16 6 1.8056 -1.0365 -4.5846 17 16 3.0253 -1.6318 -5.7222 18 6 4.4057 -1.1272 -4.7216 19 7 5.7123 -1.1465 -4.7330 20 6 6.2362 -0.5211 -3.5152 21 6 4.9763 -0.1052 -2.7387 22 7 3.8581 -0.5476 -3.6133 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7089 1.1613 3.4844 27 1 0.3490 -1.9549 -1.3693 28 1 1.8140 -2.5261 -2.2040 29 1 1.7058 -2.6221 -0.4302 30 1 0.6814 0.1052 -2.6087 31 1 2.1025 1.1189 -2.2603 32 1 0.7324 -1.0882 -4.6939 33 1 6.8215 -1.2378 -2.9390 34 1 6.8398 0.3520 -3.7633 35 1 4.9505 0.9757 -2.6011 36 1 4.9343 -0.6157 -1.7765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686011227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:00 Heat of formation + Delta-G solvation = 82.987524 kcal Electronic energy + Delta-G solvation = -18621.952807 eV Core-core repulsion = 15848.060264 eV Total energy + Delta-G solvation = -2773.892543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68583 -37.65134 -35.38012 -32.73521 -30.28326 -29.91712 -28.56977 -27.10834 -25.34263 -23.96524 -22.93523 -21.56484 -19.95295 -19.35318 -17.30583 -16.26570 -16.24561 -15.32972 -14.96303 -14.68544 -14.32406 -14.05915 -13.66432 -13.43495 -13.08513 -12.84567 -12.57601 -12.16114 -11.99722 -11.67624 -11.31357 -11.18220 -10.92903 -10.82190 -10.79058 -10.51127 -10.16650 -10.09536 -9.97416 -9.90583 -9.09998 -9.02562 -8.48905 -7.40005 -7.08573 -6.11597 -4.15947 0.98322 1.67514 2.07380 2.41106 2.86323 3.24224 3.31326 3.34481 4.32446 4.41387 4.76240 4.90914 5.09079 5.20786 5.26401 5.47084 5.59442 5.64512 5.75241 5.85901 5.88736 5.95364 6.06734 6.25537 6.43901 6.53816 6.68388 6.76408 6.95611 7.14127 7.29537 7.57029 7.60982 7.69968 7.94652 8.21427 8.41258 8.89494 9.49766 10.95352 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026894 B = 0.005429 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.869329 B = 5155.894101 C = 5750.004536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.212 3.788 3 H 0.038 0.962 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.530 5.530 13 C 0.034 3.966 14 C 0.099 3.901 15 C 0.167 3.833 16 C -0.276 4.276 17 S 0.081 5.919 18 C 0.307 3.693 19 N -0.542 5.542 20 C 0.035 3.965 21 C 0.095 3.905 22 N -0.556 5.556 23 H 0.007 0.993 24 H 0.034 0.966 25 H 0.089 0.911 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.191 0.809 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 -1.531 -11.909 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.107 3.893 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.254 5.254 13 C -0.115 4.115 14 C -0.033 4.033 15 C 0.056 3.944 16 C -0.417 4.417 17 S 0.323 5.677 18 C -0.076 4.076 19 N -0.275 5.275 20 C -0.097 4.097 21 C -0.028 4.028 22 N -0.262 5.262 23 H 0.026 0.974 24 H 0.053 0.947 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.208 0.792 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.475 -2.266 -13.237 13.872 hybrid contribution -1.042 0.694 2.790 3.058 sum 2.434 -1.571 -10.447 10.841 Atomic orbital electron populations 1.22416 1.00580 0.99631 1.00619 1.19343 0.89985 0.94346 0.85666 0.94398 1.21042 1.30780 1.12566 0.89470 0.92017 1.24915 0.95130 0.95115 0.99025 1.69875 1.36829 1.23027 1.23560 0.86512 0.78540 0.80001 0.82435 1.20671 1.21297 1.19948 1.62409 1.59074 1.02550 1.01339 1.22249 0.96725 0.91416 1.01074 1.21004 0.96742 0.97426 0.88095 1.19274 0.81176 0.96857 0.97109 1.24554 1.02257 1.15969 0.98896 1.84783 0.91148 1.69491 1.22257 1.26545 0.95926 0.94671 0.90414 1.74643 1.02685 1.28098 1.22110 1.23082 0.96217 0.99922 0.90517 1.22946 0.83467 1.01325 0.95073 1.47039 1.04206 1.55450 1.19551 0.97430 0.94735 0.89201 0.92903 0.95811 0.93907 0.90848 0.92559 0.89962 0.79244 0.88972 0.89201 0.89775 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 8.22 37.16 0.31 -3.58 16 2 C 0.21 4.92 2.31 -68.86 -0.16 4.76 16 3 H 0.04 0.97 7.93 -51.93 -0.41 0.56 16 4 C -0.50 -12.91 7.97 -34.44 -0.27 -13.19 16 5 H 0.06 1.62 7.10 -52.49 -0.37 1.25 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -24.36 11.32 55.43 0.63 -23.73 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.53 -10.32 4.69 -237.73 -1.12 -11.44 16 13 C 0.03 0.62 8.64 60.06 0.52 1.14 16 14 C 0.10 1.62 4.84 -4.97 -0.02 1.59 16 15 C 0.17 2.53 5.07 -81.60 -0.41 2.11 16 16 C -0.28 -3.61 10.89 28.87 0.31 -3.29 16 17 S 0.08 1.07 23.19 -107.50 -2.49 -1.42 16 18 C 0.31 4.85 8.92 -88.84 -0.79 4.05 16 19 N -0.54 -8.73 11.70 -60.27 -0.70 -9.44 16 20 C 0.03 0.46 8.02 -3.62 -0.03 0.43 16 21 C 0.10 1.37 7.95 -2.45 -0.02 1.35 16 22 N -0.56 -8.70 3.45 -110.38 -0.38 -9.08 16 23 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 24 H 0.03 0.75 6.33 -51.93 -0.33 0.43 16 25 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 26 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.02 0.43 6.21 -51.93 -0.32 0.10 16 28 H 0.04 0.73 7.06 -51.93 -0.37 0.36 16 29 H 0.07 1.48 6.86 -51.93 -0.36 1.12 16 30 H 0.06 0.88 6.87 -51.93 -0.36 0.52 16 31 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 32 H 0.19 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 301.54 15.07 4.54 4.54 Total: -1.00 -27.87 301.54 -10.06 -37.93 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.85 Total: 0.15 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.67 Total: -3.14 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -1.57 Total: -53.69 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.49 Total: -1.42 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.87 -10.06 -37.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.922 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds