Wall clock time and date at job start Mon Mar 30 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47503 * 2 1 4 4 C 1.50706 * 109.47204 * 120.00068 * 2 1 3 5 5 H 1.07998 * 119.99628 * 120.00164 * 4 2 1 6 6 C 1.37871 * 119.99847 * 299.99643 * 4 2 1 7 7 N 1.31523 * 120.00067 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99964 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46747 * 90.00527 * 8 6 4 10 10 H 1.48504 * 109.47496 * 210.00106 * 8 6 4 11 11 H 1.48500 * 109.47352 * 330.00459 * 8 6 4 12 12 N 1.46906 * 109.47029 * 239.99825 * 2 1 3 13 13 C 1.46898 * 110.99888 * 306.04751 * 12 2 1 14 14 C 1.46902 * 110.99573 * 70.00117 * 12 2 1 15 15 C 1.50708 * 109.46760 * 169.99885 * 14 12 2 16 16 C 1.31613 * 120.57392 * 114.72676 * 15 14 12 17 17 S 1.77091 * 105.77873 * 179.88850 * 16 15 14 18 18 C 1.77796 * 94.46133 * 0.30916 * 17 16 15 19 19 N 1.30685 * 140.09976 * 179.79621 * 18 17 16 20 20 C 1.46582 * 110.11125 * 180.02562 * 19 18 17 21 21 C 1.53730 * 104.01276 * 359.97438 * 20 19 18 22 22 N 1.36534 * 105.42500 * 359.82498 * 18 17 16 23 23 H 1.08999 * 109.46789 * 60.00096 * 1 2 3 24 24 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46786 * 300.00439 * 1 2 3 26 26 H 0.96995 * 119.99723 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 28 28 H 1.09000 * 109.46674 * 180.02562 * 13 12 2 29 29 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 30 30 H 1.08993 * 109.47196 * 289.99473 * 14 12 2 31 31 H 1.09000 * 109.47010 * 50.00282 * 14 12 2 32 32 H 1.07999 * 127.11268 * 359.97438 * 16 15 14 33 33 H 1.08996 * 110.52179 * 118.63303 * 20 19 18 34 34 H 1.09000 * 110.52044 * 241.23210 * 20 19 18 35 35 H 1.08999 * 110.57762 * 241.43072 * 21 20 19 36 36 H 1.09001 * 110.53243 * 118.59263 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6298 -0.5458 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4859 -2.5662 3.7119 12 7 2.0197 -0.6926 -1.1995 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4774 -0.5163 -3.5795 16 6 1.8056 -1.0365 -4.5846 17 16 3.0253 -1.6318 -5.7222 18 6 4.4057 -1.1272 -4.7216 19 7 5.7123 -1.1465 -4.7330 20 6 6.2362 -0.5211 -3.5152 21 6 4.9763 -0.1052 -2.7387 22 7 3.8581 -0.5476 -3.6133 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7089 1.1613 3.4844 27 1 0.3490 -1.9549 -1.3693 28 1 1.8140 -2.5261 -2.2040 29 1 1.7058 -2.6221 -0.4302 30 1 0.6814 0.1052 -2.6087 31 1 2.1025 1.1189 -2.2603 32 1 0.7324 -1.0882 -4.6939 33 1 6.8215 -1.2378 -2.9390 34 1 6.8398 0.3520 -3.7633 35 1 4.9505 0.9757 -2.6011 36 1 4.9343 -0.6157 -1.7765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686011227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:00 Heat of formation + Delta-G solvation = 65.063903 kcal Electronic energy + Delta-G solvation = -18622.730033 eV Core-core repulsion = 15848.060264 eV Total energy + Delta-G solvation = -2774.669770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82296 -39.15530 -36.68237 -34.59583 -31.50228 -31.23805 -30.10509 -28.47443 -27.27793 -25.49785 -24.05419 -22.80423 -21.34899 -20.79039 -18.55708 -18.09708 -17.46744 -16.96015 -16.16698 -16.09772 -15.80796 -15.45788 -14.94932 -14.80467 -14.42137 -14.16760 -14.06348 -13.50136 -13.28969 -13.14180 -12.95133 -12.81993 -12.61771 -12.54540 -12.36317 -12.06522 -11.98019 -11.57494 -11.22364 -11.10023 -10.93442 -10.49759 -10.18325 -8.94929 -8.19582 -8.11203 -6.22186 -0.10438 0.55506 0.98484 1.25169 1.40798 1.43117 1.51804 1.76345 2.41711 3.17774 3.31548 3.38997 3.62083 4.01951 4.13866 4.27606 4.43547 4.50891 4.58705 4.65836 4.66523 4.72660 4.76792 4.83751 4.85924 4.91680 5.12239 5.16636 5.32593 5.50535 5.69224 5.78543 6.02887 6.18406 6.41952 6.48980 6.64652 6.90102 7.47115 8.93413 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026894 B = 0.005429 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.869329 B = 5155.894101 C = 5750.004536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.219 3.781 3 H 0.009 0.991 4 C -0.511 4.511 5 H 0.052 0.948 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.538 5.538 13 C 0.043 3.957 14 C 0.106 3.894 15 C 0.140 3.860 16 C -0.252 4.252 17 S 0.113 5.887 18 C 0.288 3.712 19 N -0.567 5.567 20 C 0.038 3.962 21 C 0.096 3.904 22 N -0.564 5.564 23 H 0.031 0.969 24 H 0.035 0.965 25 H 0.060 0.940 26 H 0.261 0.739 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.899 -2.205 -13.107 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.113 3.887 3 H 0.027 0.973 4 C -0.549 4.549 5 H 0.070 0.930 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.262 5.262 13 C -0.105 4.105 14 C -0.025 4.025 15 C 0.029 3.971 16 C -0.392 4.392 17 S 0.356 5.644 18 C -0.094 4.094 19 N -0.301 5.301 20 C -0.094 4.094 21 C -0.028 4.028 22 N -0.272 5.272 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.104 -2.948 -14.452 15.073 hybrid contribution -0.930 0.893 3.064 3.324 sum 2.174 -2.054 -11.388 11.774 Atomic orbital electron populations 1.22215 0.99894 0.99530 1.00309 1.19051 0.90309 0.92758 0.86617 0.97311 1.21300 1.30460 1.12294 0.90859 0.92973 1.25585 0.95427 0.95777 1.01543 1.69992 1.37763 1.24094 1.23967 0.85633 0.77974 0.79034 0.79415 1.20455 1.21056 1.19655 1.62224 1.59374 1.03068 1.01487 1.22140 0.97034 0.90570 1.00740 1.20917 0.97764 0.96647 0.87156 1.19194 0.81132 0.99172 0.97594 1.25056 1.03598 1.13010 0.97577 1.84729 0.89844 1.68574 1.21256 1.26948 0.96437 0.94982 0.91066 1.74585 1.03181 1.29005 1.23373 1.23161 0.95878 1.00670 0.89669 1.22930 0.83978 1.01460 0.94400 1.47152 1.04558 1.55685 1.19758 0.95020 0.94560 0.92145 0.92999 0.95128 0.92249 0.93088 0.91076 0.90815 0.76298 0.88264 0.87404 0.89171 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.10 8.22 71.98 0.59 -6.50 16 2 C 0.22 10.22 2.31 44.17 0.10 10.33 16 3 H 0.01 0.47 7.93 -2.39 -0.02 0.45 16 4 C -0.51 -26.63 7.97 25.60 0.20 -26.42 16 5 H 0.05 2.77 7.10 -2.91 -0.02 2.75 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -50.63 11.32 21.45 0.24 -50.39 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.54 -20.60 4.69 -906.03 -4.25 -24.86 16 13 C 0.04 1.54 8.64 127.69 1.10 2.65 16 14 C 0.11 3.31 4.84 85.56 0.41 3.73 16 15 C 0.14 3.93 5.07 40.95 0.21 4.14 16 16 C -0.25 -5.74 10.89 67.20 0.73 -5.00 16 17 S 0.11 2.71 23.19 -56.49 -1.31 1.40 16 18 C 0.29 8.65 8.92 179.73 1.60 10.25 16 19 N -0.57 -17.66 11.70 -344.59 -4.03 -21.69 16 20 C 0.04 0.98 8.02 86.61 0.69 1.67 16 21 C 0.10 2.72 7.95 86.20 0.69 3.40 16 22 N -0.56 -16.98 3.45 -503.13 -1.74 -18.71 16 23 H 0.03 1.20 6.91 -2.39 -0.02 1.19 16 24 H 0.04 1.55 6.33 -2.39 -0.02 1.54 16 25 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 26 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 27 H 0.03 1.04 6.21 -2.39 -0.01 1.02 16 28 H 0.06 1.90 7.06 -2.39 -0.02 1.88 16 29 H 0.05 2.03 6.86 -2.39 -0.02 2.01 16 30 H 0.07 2.01 6.87 -2.39 -0.02 2.00 16 31 H 0.07 2.41 7.93 -2.39 -0.02 2.40 16 32 H 0.22 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -59.10 301.54 -1.20 -60.29 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.08 Total: 9.93 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 6.79 Total: -0.50 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -9.78 Total: -115.64 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.31 Total: 1.40 kcal Total: -59.10 -1.20 -60.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.356 kcal (2) G-P(sol) polarization free energy of solvation -59.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds