Wall clock time and date at job start Mon Mar 30 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46560 * 2 1 4 4 N 1.46504 * 109.47145 * 119.99734 * 2 1 3 5 5 C 1.36934 * 119.99796 * 295.04078 * 4 2 1 6 6 H 1.08003 * 120.00157 * 319.87339 * 5 4 2 7 7 C 1.38812 * 120.00188 * 139.88396 * 5 4 2 8 8 N 1.31615 * 120.00487 * 156.66435 * 7 5 4 9 9 Si 1.86806 * 119.99434 * 336.66000 * 7 5 4 10 10 H 1.48499 * 109.47119 * 95.53229 * 9 7 5 11 11 H 1.48499 * 109.46898 * 215.52717 * 9 7 5 12 12 H 1.48498 * 109.47495 * 335.52613 * 9 7 5 13 13 C 1.46494 * 119.99880 * 115.03858 * 4 2 1 14 14 C 1.50695 * 109.47278 * 93.99267 * 13 4 2 15 15 C 1.31623 * 120.57582 * 107.04753 * 14 13 4 16 16 S 1.77091 * 105.77975 * 180.18473 * 15 14 13 17 17 C 1.77803 * 94.46114 * 359.73401 * 16 15 14 18 18 N 1.30682 * 140.09441 * 179.97438 * 17 16 15 19 19 C 1.46578 * 110.10377 * 180.32901 * 18 17 16 20 20 C 1.53721 * 104.02003 * 359.97438 * 19 18 17 21 21 N 1.36530 * 105.42341 * 0.26350 * 17 16 15 22 22 H 1.08994 * 109.47588 * 305.16182 * 1 2 3 23 23 H 1.08993 * 109.47581 * 65.17187 * 1 2 3 24 24 H 1.09008 * 109.46490 * 185.16454 * 1 2 3 25 25 H 1.08991 * 109.47180 * 239.99979 * 2 1 3 26 26 H 1.09001 * 109.46713 * 174.65295 * 3 2 1 27 27 H 1.08994 * 109.47143 * 294.65497 * 3 2 1 28 28 H 1.09001 * 109.47323 * 54.65750 * 3 2 1 29 29 H 0.97003 * 119.99905 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46997 * 333.99351 * 13 4 2 31 31 H 1.09004 * 109.47076 * 213.99768 * 13 4 2 32 32 H 1.07991 * 127.10847 * 359.97438 * 15 14 13 33 33 H 1.08998 * 110.51833 * 241.35938 * 19 18 17 34 34 H 1.09007 * 110.63837 * 118.69200 * 19 18 17 35 35 H 1.08999 * 110.55666 * 241.41947 * 20 19 18 36 36 H 1.08996 * 110.68569 * 118.64101 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7733 -0.1664 2.4373 6 1 1.8425 0.8996 2.5966 7 6 1.4363 -1.0051 3.4908 8 7 1.6439 -0.6191 4.7318 9 14 0.6879 -2.6818 3.1470 10 1 1.7580 -3.7115 3.1497 11 1 -0.3106 -3.0031 4.1981 12 1 0.0215 -2.6639 1.8201 13 6 2.7688 -1.9418 1.0646 14 6 4.2456 -1.6425 1.0470 15 6 4.9990 -1.9281 2.0878 16 16 6.6372 -1.4159 1.6515 17 6 6.1755 -0.8387 0.0343 18 7 6.7099 -0.2910 -1.0250 19 6 5.6843 -0.0660 -2.0477 20 6 4.3923 -0.5913 -1.4013 21 7 4.8323 -1.0639 -0.0618 22 1 -0.3634 0.5918 0.8401 23 1 -0.3634 0.4315 -0.9326 24 1 -0.3632 -1.0236 0.0925 25 1 1.8933 -0.5138 -0.8899 26 1 3.1257 1.4441 0.0958 27 1 1.7568 1.9280 -0.9339 28 1 1.6005 1.9833 0.8383 29 1 1.4087 -1.2054 5.4679 30 1 2.4876 -2.4381 0.1357 31 1 2.5400 -2.5932 1.9082 32 1 4.6829 -2.3783 3.0171 33 1 5.9157 -0.6299 -2.9513 34 1 5.5941 0.9964 -2.2741 35 1 3.9816 -1.4167 -1.9828 36 1 3.6584 0.2084 -1.3026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686011678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:54 Heat of formation + Delta-G solvation = 97.862734 kcal Electronic energy + Delta-G solvation = -19324.761799 eV Core-core repulsion = 16551.514293 eV Total energy + Delta-G solvation = -2773.247505 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.48644 -37.18593 -35.22651 -32.50970 -30.95233 -30.06391 -29.02287 -26.55995 -26.20729 -23.57913 -22.83998 -21.52290 -19.89396 -19.44282 -17.41368 -16.45127 -16.05825 -15.26735 -15.03798 -14.75961 -14.39952 -13.71055 -13.40928 -13.34196 -13.06025 -12.68973 -12.54489 -12.28850 -12.03939 -11.87560 -11.77051 -11.54533 -10.97662 -10.79490 -10.62962 -10.40072 -10.28721 -10.09387 -9.88048 -9.71518 -9.57858 -8.83204 -8.63585 -7.04019 -6.78968 -6.14135 -3.58796 1.28440 2.03277 2.43830 2.71086 3.06677 3.16456 3.36370 3.38308 4.36749 4.49187 4.77061 5.01792 5.05335 5.16927 5.35719 5.57513 5.58334 5.67899 5.74558 5.86016 5.88596 5.95946 6.13492 6.15253 6.21598 6.28713 6.35904 6.47762 6.56065 6.74268 6.93124 6.98374 7.46126 7.81661 7.88579 8.27832 8.79448 9.54033 9.92150 11.00310 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019555 B = 0.009178 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.513249 B = 3049.970735 C = 3909.756650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.164 3.836 3 C -0.155 4.155 4 N -0.587 5.587 5 C -0.267 4.267 6 H 0.080 0.920 7 C 0.046 3.954 8 N -0.887 5.887 9 Si 0.862 3.138 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.266 1.266 13 C 0.184 3.816 14 C 0.132 3.868 15 C -0.245 4.245 16 S 0.071 5.929 17 C 0.315 3.685 18 N -0.555 5.555 19 C 0.039 3.961 20 C 0.082 3.918 21 N -0.560 5.560 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.265 0.735 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.190 0.810 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 -2.302 -10.334 11.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 C -0.214 4.214 4 N -0.308 5.308 5 C -0.395 4.395 6 H 0.098 0.902 7 C -0.156 4.156 8 N -0.526 5.526 9 Si 0.692 3.308 10 H -0.211 1.211 11 H -0.225 1.225 12 H -0.190 1.190 13 C 0.055 3.945 14 C 0.021 3.979 15 C -0.385 4.385 16 S 0.313 5.687 17 C -0.067 4.067 18 N -0.290 5.290 19 C -0.094 4.094 20 C -0.042 4.042 21 N -0.269 5.269 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.207 0.793 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.814 -2.000 -9.982 11.261 hybrid contribution -2.553 -1.003 -0.518 2.792 sum 2.261 -3.003 -10.500 11.153 Atomic orbital electron populations 1.22166 0.97396 1.01476 1.00317 1.20541 0.92724 0.92349 0.88535 1.22166 1.00702 0.98017 1.00485 1.44220 1.58186 1.25052 1.03296 1.18619 1.43196 0.94061 0.83662 0.90247 1.25485 0.97472 0.97633 0.95011 1.69889 1.46394 1.37855 0.98446 0.87154 0.80018 0.85402 0.78276 1.21062 1.22503 1.19049 1.20365 0.83031 0.90561 1.00573 1.20353 0.98109 0.94287 0.85172 1.24612 0.92874 1.17555 1.03421 1.84733 1.11280 1.69456 1.03225 1.26600 0.85244 0.95334 0.99518 1.74658 1.26940 1.26983 1.00410 1.22987 0.87850 1.01761 0.96771 1.23109 0.99485 1.00474 0.81175 1.47058 1.07097 1.57980 1.14772 0.91841 0.94252 0.93395 0.93438 0.93411 0.94076 0.91863 0.92495 0.92789 0.90355 0.79286 0.89613 0.89463 0.90291 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.16 37.16 0.34 -2.34 16 2 C 0.16 2.94 2.77 -67.92 -0.19 2.75 16 3 C -0.16 -2.66 7.94 37.16 0.30 -2.37 16 4 N -0.59 -12.45 1.95 -167.02 -0.33 -12.77 16 5 C -0.27 -6.75 8.81 -15.06 -0.13 -6.88 16 6 H 0.08 2.24 7.01 -52.48 -0.37 1.87 16 7 C 0.05 1.21 5.29 -17.43 -0.09 1.12 16 8 N -0.89 -25.13 13.97 55.49 0.78 -24.36 16 9 Si 0.86 20.07 25.24 -169.99 -4.29 15.78 16 10 H -0.28 -6.31 6.68 56.52 0.38 -5.93 16 11 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.18 3.64 4.91 -5.20 -0.03 3.62 16 14 C 0.13 2.53 6.28 -81.61 -0.51 2.01 16 15 C -0.24 -4.57 11.04 28.87 0.32 -4.25 16 16 S 0.07 1.22 23.19 -107.50 -2.49 -1.28 16 17 C 0.31 5.74 8.92 -88.85 -0.79 4.95 16 18 N -0.55 -9.83 11.70 -60.27 -0.70 -10.54 16 19 C 0.04 0.54 8.02 -3.62 -0.03 0.51 16 20 C 0.08 1.18 7.01 -2.45 -0.02 1.16 16 21 N -0.56 -9.95 3.45 -110.39 -0.38 -10.33 16 22 H 0.06 1.21 7.92 -51.93 -0.41 0.79 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 25 H 0.05 0.76 6.04 -51.93 -0.31 0.45 16 26 H 0.05 0.88 7.10 -51.93 -0.37 0.51 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.20 7.15 -51.93 -0.37 0.83 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 30 H 0.05 0.95 7.88 -51.93 -0.41 0.55 16 31 H 0.08 1.67 3.36 -51.93 -0.17 1.49 16 32 H 0.19 3.46 8.06 -52.49 -0.42 3.04 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 1.39 4.24 -51.93 -0.22 1.17 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -28.45 296.45 -8.54 -37.00 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.76 Total: 1.74 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -0.84 Total: 0.29 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.64 Total: -58.00 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.29 Total: 15.78 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.45 -8.54 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.860 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds