Wall clock time and date at job start Mon Mar 30 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46560 * 2 1 4 4 N 1.46504 * 109.47145 * 119.99734 * 2 1 3 5 5 C 1.36934 * 119.99796 * 295.04078 * 4 2 1 6 6 H 1.08003 * 120.00157 * 319.87339 * 5 4 2 7 7 C 1.38812 * 120.00188 * 139.88396 * 5 4 2 8 8 N 1.31615 * 120.00487 * 156.66435 * 7 5 4 9 9 Si 1.86806 * 119.99434 * 336.66000 * 7 5 4 10 10 H 1.48499 * 109.47119 * 95.53229 * 9 7 5 11 11 H 1.48499 * 109.46898 * 215.52717 * 9 7 5 12 12 H 1.48498 * 109.47495 * 335.52613 * 9 7 5 13 13 C 1.46494 * 119.99880 * 115.03858 * 4 2 1 14 14 C 1.50695 * 109.47278 * 93.99267 * 13 4 2 15 15 C 1.31623 * 120.57582 * 107.04753 * 14 13 4 16 16 S 1.77091 * 105.77975 * 180.18473 * 15 14 13 17 17 C 1.77803 * 94.46114 * 359.73401 * 16 15 14 18 18 N 1.30682 * 140.09441 * 179.97438 * 17 16 15 19 19 C 1.46578 * 110.10377 * 180.32901 * 18 17 16 20 20 C 1.53721 * 104.02003 * 359.97438 * 19 18 17 21 21 N 1.36530 * 105.42341 * 0.26350 * 17 16 15 22 22 H 1.08994 * 109.47588 * 305.16182 * 1 2 3 23 23 H 1.08993 * 109.47581 * 65.17187 * 1 2 3 24 24 H 1.09008 * 109.46490 * 185.16454 * 1 2 3 25 25 H 1.08991 * 109.47180 * 239.99979 * 2 1 3 26 26 H 1.09001 * 109.46713 * 174.65295 * 3 2 1 27 27 H 1.08994 * 109.47143 * 294.65497 * 3 2 1 28 28 H 1.09001 * 109.47323 * 54.65750 * 3 2 1 29 29 H 0.97003 * 119.99905 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46997 * 333.99351 * 13 4 2 31 31 H 1.09004 * 109.47076 * 213.99768 * 13 4 2 32 32 H 1.07991 * 127.10847 * 359.97438 * 15 14 13 33 33 H 1.08998 * 110.51833 * 241.35938 * 19 18 17 34 34 H 1.09007 * 110.63837 * 118.69200 * 19 18 17 35 35 H 1.08999 * 110.55666 * 241.41947 * 20 19 18 36 36 H 1.08996 * 110.68569 * 118.64101 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7733 -0.1664 2.4373 6 1 1.8425 0.8996 2.5966 7 6 1.4363 -1.0051 3.4908 8 7 1.6439 -0.6191 4.7318 9 14 0.6879 -2.6818 3.1470 10 1 1.7580 -3.7115 3.1497 11 1 -0.3106 -3.0031 4.1981 12 1 0.0215 -2.6639 1.8201 13 6 2.7688 -1.9418 1.0646 14 6 4.2456 -1.6425 1.0470 15 6 4.9990 -1.9281 2.0878 16 16 6.6372 -1.4159 1.6515 17 6 6.1755 -0.8387 0.0343 18 7 6.7099 -0.2910 -1.0250 19 6 5.6843 -0.0660 -2.0477 20 6 4.3923 -0.5913 -1.4013 21 7 4.8323 -1.0639 -0.0618 22 1 -0.3634 0.5918 0.8401 23 1 -0.3634 0.4315 -0.9326 24 1 -0.3632 -1.0236 0.0925 25 1 1.8933 -0.5138 -0.8899 26 1 3.1257 1.4441 0.0958 27 1 1.7568 1.9280 -0.9339 28 1 1.6005 1.9833 0.8383 29 1 1.4087 -1.2054 5.4679 30 1 2.4876 -2.4381 0.1357 31 1 2.5400 -2.5932 1.9082 32 1 4.6829 -2.3783 3.0171 33 1 5.9157 -0.6299 -2.9513 34 1 5.5941 0.9964 -2.2741 35 1 3.9816 -1.4167 -1.9828 36 1 3.6584 0.2084 -1.3026 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686011678.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:54 Heat of formation + Delta-G solvation = 80.131889 kcal Electronic energy + Delta-G solvation = -19325.530666 eV Core-core repulsion = 16551.514293 eV Total energy + Delta-G solvation = -2774.016373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.80226 -38.74062 -36.60755 -34.33159 -32.56595 -31.31811 -30.42762 -28.03609 -27.79996 -25.29033 -24.07916 -22.85433 -21.37872 -20.95519 -18.96911 -17.99530 -17.40910 -17.02382 -16.56247 -16.15425 -15.75845 -15.18039 -14.89931 -14.79883 -14.48465 -14.31258 -14.03763 -13.78104 -13.44128 -13.22820 -13.06072 -13.00086 -12.59238 -12.33962 -12.16228 -12.12091 -11.76005 -11.65538 -11.44491 -11.11739 -11.04734 -10.57475 -10.14217 -8.80408 -8.16948 -8.13477 -5.58103 -0.05154 0.62372 1.03642 1.28936 1.33364 1.45333 1.53567 1.78848 2.43396 3.06923 3.31734 3.34622 3.72888 4.00500 4.12164 4.17973 4.19964 4.41335 4.48909 4.56370 4.62341 4.65706 4.74261 4.82895 4.86667 4.88416 5.01334 5.06372 5.12682 5.38934 5.49775 5.56394 5.97424 6.06874 6.27787 6.51986 6.97292 7.61578 8.03068 9.02787 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019555 B = 0.009178 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.513249 B = 3049.970735 C = 3909.756650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 C -0.144 4.144 4 N -0.595 5.595 5 C -0.245 4.245 6 H 0.037 0.963 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.922 3.078 10 H -0.268 1.268 11 H -0.313 1.313 12 H -0.251 1.251 13 C 0.183 3.817 14 C 0.128 3.872 15 C -0.261 4.261 16 S 0.084 5.916 17 C 0.297 3.703 18 N -0.569 5.569 19 C 0.037 3.963 20 C 0.078 3.922 21 N -0.564 5.564 22 H 0.035 0.965 23 H 0.075 0.925 24 H 0.040 0.960 25 H 0.079 0.921 26 H 0.032 0.968 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.262 0.738 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.185 0.815 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 -3.133 -13.510 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.053 3.947 3 C -0.203 4.203 4 N -0.317 5.317 5 C -0.374 4.374 6 H 0.054 0.946 7 C -0.202 4.202 8 N -0.582 5.582 9 Si 0.750 3.250 10 H -0.194 1.194 11 H -0.242 1.242 12 H -0.175 1.175 13 C 0.054 3.946 14 C 0.015 3.985 15 C -0.402 4.402 16 S 0.327 5.673 17 C -0.085 4.085 18 N -0.304 5.304 19 C -0.094 4.094 20 C -0.045 4.045 21 N -0.273 5.273 22 H 0.054 0.946 23 H 0.094 0.906 24 H 0.059 0.941 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.203 0.797 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.723 -2.828 -13.232 14.332 hybrid contribution -2.422 -0.623 0.350 2.525 sum 2.301 -3.451 -12.882 13.533 Atomic orbital electron populations 1.22103 0.96761 1.00822 1.01116 1.20793 0.93241 0.92512 0.88142 1.22048 0.99327 0.97736 1.01145 1.44298 1.59007 1.25503 1.02858 1.18324 1.41433 0.92241 0.85450 0.94551 1.25985 0.98368 1.01249 0.94600 1.70017 1.49040 1.39647 0.99503 0.86185 0.79072 0.81771 0.77995 1.19444 1.24206 1.17496 1.20339 0.83309 0.89598 1.01351 1.20234 0.97832 0.94603 0.85819 1.24704 0.94141 1.17888 1.03445 1.84600 1.09975 1.69314 1.03428 1.26711 0.85708 0.96230 0.99899 1.74602 1.28753 1.26097 1.00983 1.23201 0.86563 1.03126 0.96534 1.23364 0.99790 1.01460 0.79871 1.47191 1.06987 1.57728 1.15386 0.94576 0.90597 0.94052 0.90275 0.94939 0.90372 0.94868 0.92864 0.89820 0.91913 0.79742 0.86971 0.88096 0.87684 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.16 71.98 0.66 -4.11 16 2 C 0.16 5.22 2.77 44.99 0.12 5.34 16 3 C -0.14 -4.68 7.94 71.98 0.57 -4.11 16 4 N -0.60 -24.47 1.95 -682.34 -1.33 -25.80 16 5 C -0.24 -12.59 8.81 84.03 0.74 -11.85 16 6 H 0.04 2.17 7.01 -2.91 -0.02 2.15 16 7 C 0.00 -0.24 5.29 84.86 0.45 0.21 16 8 N -0.94 -55.33 13.97 21.65 0.30 -55.03 16 9 Si 0.92 41.63 25.24 68.60 1.73 43.36 16 10 H -0.27 -11.32 6.68 99.48 0.66 -10.65 16 11 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 13 C 0.18 6.84 4.91 85.63 0.42 7.26 16 14 C 0.13 4.68 6.28 40.94 0.26 4.93 16 15 C -0.26 -9.68 11.04 67.19 0.74 -8.94 16 16 S 0.08 2.85 23.19 -56.49 -1.31 1.54 16 17 C 0.30 10.28 8.92 179.73 1.60 11.89 16 18 N -0.57 -18.79 11.70 -344.60 -4.03 -22.82 16 19 C 0.04 0.90 8.02 86.61 0.69 1.60 16 20 C 0.08 1.94 7.01 86.20 0.60 2.55 16 21 N -0.56 -18.67 3.45 -503.15 -1.74 -20.41 16 22 H 0.04 1.33 7.92 -2.39 -0.02 1.31 16 23 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.08 2.15 6.04 -2.39 -0.01 2.14 16 26 H 0.03 1.14 7.10 -2.39 -0.02 1.12 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.03 1.26 7.15 -2.39 -0.02 1.24 16 29 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.08 2.62 7.88 -2.39 -0.02 2.60 16 31 H 0.06 2.56 3.36 -2.38 -0.01 2.55 16 32 H 0.19 6.87 8.06 -2.92 -0.02 6.85 16 33 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.10 2.41 4.24 -2.39 -0.01 2.40 16 Total: -1.00 -62.86 296.45 1.53 -61.33 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.04 Total: 13.07 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 6.86 Total: 4.76 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -6.80 Total: -124.06 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.73 Total: 43.36 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -62.86 1.53 -61.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011678.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.458 kcal (2) G-P(sol) polarization free energy of solvation -62.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds