Wall clock time and date at job start Mon Mar 30 2020 04:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47577 * 90.94852 * 3 2 1 5 5 H 1.48501 * 109.47327 * 210.95011 * 3 2 1 6 6 H 1.48507 * 109.47252 * 330.94768 * 3 2 1 7 7 C 1.38809 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00886 * 20.88865 * 7 2 1 9 9 N 1.36936 * 119.99876 * 200.89048 * 7 2 1 10 10 C 1.46501 * 120.00339 * 221.95704 * 9 7 2 11 11 C 1.53001 * 109.47281 * 89.99461 * 10 9 7 12 12 H 1.09001 * 109.47513 * 59.98023 * 11 10 9 13 13 C 1.53089 * 109.48026 * 180.02562 * 11 10 9 14 14 C 1.53181 * 109.16206 * 177.59420 * 13 11 10 15 15 C 1.53169 * 109.03704 * 303.01878 * 14 13 11 16 16 C 1.53098 * 109.16241 * 56.98159 * 15 14 13 17 17 O 1.42896 * 109.48086 * 299.94982 * 11 10 9 18 18 C 1.46504 * 120.00117 * 41.95328 * 9 7 2 19 19 C 1.53006 * 109.47004 * 96.06467 * 18 9 7 20 20 F 1.39902 * 109.46864 * 63.77756 * 19 18 9 21 21 F 1.39897 * 109.47063 * 183.77482 * 19 18 9 22 22 F 1.39898 * 109.47102 * 303.77924 * 19 18 9 23 23 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47556 * 209.99980 * 10 9 7 25 25 H 1.09001 * 109.46826 * 330.00020 * 10 9 7 26 26 H 1.09004 * 109.52315 * 297.50166 * 13 11 10 27 27 H 1.09003 * 109.52454 * 57.62374 * 13 11 10 28 28 H 1.08998 * 109.54229 * 62.88809 * 14 13 11 29 29 H 1.09006 * 109.53954 * 183.06180 * 14 13 11 30 30 H 1.09002 * 109.52348 * 176.88290 * 15 14 13 31 31 H 1.08995 * 109.52558 * 297.01436 * 15 14 13 32 32 H 1.08996 * 109.48119 * 62.37534 * 16 15 14 33 33 H 1.09000 * 109.47761 * 182.40867 * 16 15 14 34 34 H 1.08997 * 109.47275 * 216.06595 * 18 9 7 35 35 H 1.08994 * 109.47048 * 336.07074 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5179 2.0348 1.3998 5 1 3.5376 1.4460 -0.7200 6 1 1.4378 2.6584 -0.6799 7 6 2.0102 -1.2022 0.0005 8 1 1.5235 -2.1069 -0.3325 9 7 3.3120 -1.2410 0.4234 10 6 4.2972 -2.0390 -0.3106 11 6 4.9440 -1.1774 -1.3971 12 1 5.4391 -0.3226 -0.9362 13 6 5.9731 -2.0113 -2.1647 14 6 6.5725 -1.1602 -3.2884 15 6 5.4421 -0.6570 -4.1913 16 6 4.4334 0.1246 -3.3453 17 8 3.9381 -0.7155 -2.3008 18 6 3.7197 -0.4845 1.6100 19 6 3.7022 -1.4047 2.8323 20 9 4.6515 -2.4188 2.6661 21 9 4.0078 -0.6631 3.9786 22 9 2.4315 -1.9734 2.9697 23 1 -0.4850 0.8401 -0.0004 24 1 5.0648 -2.3920 0.3780 25 1 3.8019 -2.8935 -0.7716 26 1 6.7649 -2.3279 -1.4857 27 1 5.4863 -2.8885 -2.5909 28 1 7.1021 -0.3098 -2.8590 29 1 7.2663 -1.7644 -3.8730 30 1 5.8539 -0.0050 -4.9616 31 1 4.9450 -1.5061 -4.6602 32 1 4.9221 0.9963 -2.9102 33 1 3.6048 0.4487 -3.9750 34 1 4.7267 -0.0939 1.4636 35 1 3.0284 0.3431 1.7684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686011932.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:00 Heat of formation + Delta-G solvation = -188.334418 kcal Electronic energy + Delta-G solvation = -22285.396843 eV Core-core repulsion = 18482.836535 eV Total energy + Delta-G solvation = -3802.560308 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.18126 -46.80177 -46.55881 -38.95177 -36.02159 -33.18325 -32.09877 -31.17464 -28.46470 -26.50523 -24.02132 -23.20767 -22.40652 -20.48028 -19.93424 -17.81312 -17.60802 -17.40914 -16.03725 -15.73252 -15.50096 -14.97287 -14.56480 -14.26695 -13.98296 -13.71075 -13.51972 -13.22640 -12.96107 -12.87567 -12.77683 -12.73363 -12.68749 -12.25758 -12.09459 -11.54549 -11.37173 -11.06070 -10.91117 -10.72922 -10.46951 -10.40388 -10.20066 -9.96746 -9.57385 -8.85014 -8.56600 -7.04165 -6.02369 -3.52432 3.23597 3.42274 3.49261 3.69144 4.31306 4.45856 4.57054 4.80272 4.93065 5.00364 5.03074 5.09266 5.24563 5.37461 5.46837 5.54430 5.69970 5.77013 5.89638 5.91972 6.01285 6.07326 6.09915 6.13700 6.18571 6.22634 6.41722 6.46302 6.73198 7.84853 8.00817 8.32394 8.83085 9.61918 9.91149 11.12255 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.009233 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.884129 B = 3031.783468 C = 3956.882219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.049 3.951 3 Si 0.866 3.134 4 H -0.288 1.288 5 H -0.258 1.258 6 H -0.298 1.298 7 C -0.258 4.258 8 H 0.084 0.916 9 N -0.576 5.576 10 C 0.148 3.852 11 C 0.070 3.930 12 H 0.043 0.957 13 C -0.151 4.151 14 C -0.119 4.119 15 C -0.154 4.154 16 C 0.056 3.944 17 O -0.335 6.335 18 C 0.092 3.908 19 C 0.414 3.586 20 F -0.200 7.200 21 F -0.208 7.208 22 F -0.172 7.172 23 H 0.264 0.736 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.519 -0.781 -2.705 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.153 4.153 3 Si 0.696 3.304 4 H -0.217 1.217 5 H -0.182 1.182 6 H -0.225 1.225 7 C -0.386 4.386 8 H 0.102 0.898 9 N -0.293 5.293 10 C 0.022 3.978 11 C 0.010 3.990 12 H 0.061 0.939 13 C -0.189 4.189 14 C -0.157 4.157 15 C -0.192 4.192 16 C -0.022 4.022 17 O -0.253 6.253 18 C -0.039 4.039 19 C 0.356 3.644 20 F -0.181 7.181 21 F -0.190 7.190 22 F -0.154 7.154 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.114 -0.783 -2.726 12.441 hybrid contribution 0.761 1.045 0.122 1.299 sum 12.875 0.262 -2.604 13.138 Atomic orbital electron populations 1.69851 1.06040 1.26823 1.50387 1.25482 0.94967 0.97670 0.97142 0.87147 0.81467 0.84729 0.77061 1.21662 1.18171 1.22515 1.18619 0.84284 0.94458 1.41221 0.89827 1.43961 1.07793 1.54947 1.22603 1.21278 0.91819 0.93590 0.91098 1.22871 0.88961 0.96252 0.90922 0.93896 1.22218 0.99158 0.99570 0.97969 1.21548 0.97429 0.99536 0.97173 1.22194 0.97497 1.01028 0.98502 1.22483 0.97105 0.92642 0.89975 1.88286 1.31721 1.66347 1.38958 1.22797 1.02395 0.94174 0.84500 1.23079 0.73311 0.81723 0.86288 1.93050 1.65817 1.63746 1.95524 1.93080 1.93259 1.77096 1.55548 1.93182 1.39970 1.86032 1.96190 0.92585 0.91856 0.91342 0.91471 0.91063 0.92387 0.92151 0.91830 0.91199 0.94367 0.89562 0.90502 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.97 55.49 0.78 -25.94 16 2 C 0.05 1.38 5.25 -17.43 -0.09 1.28 16 3 Si 0.87 21.27 25.40 -169.99 -4.32 16.95 16 4 H -0.29 -6.83 6.46 56.52 0.37 -6.47 16 5 H -0.26 -6.06 7.05 56.52 0.40 -5.66 16 6 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 7 C -0.26 -6.93 8.97 -15.06 -0.14 -7.07 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.58 -13.01 1.83 -173.23 -0.32 -13.32 16 10 C 0.15 2.80 5.26 -4.04 -0.02 2.78 16 11 C 0.07 1.23 2.92 -26.68 -0.08 1.15 16 12 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 13 C -0.15 -2.06 5.42 -26.59 -0.14 -2.20 16 14 C -0.12 -1.46 6.03 -26.55 -0.16 -1.62 16 15 C -0.15 -1.99 6.14 -26.59 -0.16 -2.16 16 16 C 0.06 0.91 6.84 37.21 0.25 1.16 16 17 O -0.34 -6.75 9.63 -35.23 -0.34 -7.09 16 18 C 0.09 1.93 4.31 -4.04 -0.02 1.91 16 19 C 0.41 8.38 3.30 37.16 0.12 8.50 16 20 F -0.20 -3.77 15.81 2.25 0.04 -3.73 16 21 F -0.21 -3.96 17.32 2.25 0.04 -3.93 16 22 F -0.17 -3.96 16.93 2.25 0.04 -3.93 16 23 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 24 H 0.06 1.06 6.76 -51.93 -0.35 0.71 16 25 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 35 H 0.10 2.31 3.93 -51.93 -0.20 2.11 16 LS Contribution 292.43 15.07 4.41 4.41 Total: -1.00 -29.58 292.43 -4.91 -34.49 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.80 Total: -1.64 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.43 Total: 3.74 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.46 Total: -39.27 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.34 Total: -7.09 kcal Atomic # 9 Polarization: -11.69 SS G_CDS: 0.11 Total: -11.58 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.32 Total: 16.95 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.58 -4.91 -34.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011932.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.848 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds