Wall clock time and date at job start Mon Mar 30 2020 04:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00188 * 2 1 4 4 H 1.48497 * 109.47577 * 90.94852 * 3 2 1 5 5 H 1.48501 * 109.47327 * 210.95011 * 3 2 1 6 6 H 1.48507 * 109.47252 * 330.94768 * 3 2 1 7 7 C 1.38809 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00886 * 20.88865 * 7 2 1 9 9 N 1.36936 * 119.99876 * 200.89048 * 7 2 1 10 10 C 1.46501 * 120.00339 * 221.95704 * 9 7 2 11 11 C 1.53001 * 109.47281 * 89.99461 * 10 9 7 12 12 H 1.09001 * 109.47513 * 59.98023 * 11 10 9 13 13 C 1.53089 * 109.48026 * 180.02562 * 11 10 9 14 14 C 1.53181 * 109.16206 * 177.59420 * 13 11 10 15 15 C 1.53169 * 109.03704 * 303.01878 * 14 13 11 16 16 C 1.53098 * 109.16241 * 56.98159 * 15 14 13 17 17 O 1.42896 * 109.48086 * 299.94982 * 11 10 9 18 18 C 1.46504 * 120.00117 * 41.95328 * 9 7 2 19 19 C 1.53006 * 109.47004 * 96.06467 * 18 9 7 20 20 F 1.39902 * 109.46864 * 63.77756 * 19 18 9 21 21 F 1.39897 * 109.47063 * 183.77482 * 19 18 9 22 22 F 1.39898 * 109.47102 * 303.77924 * 19 18 9 23 23 H 0.97005 * 119.99723 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47556 * 209.99980 * 10 9 7 25 25 H 1.09001 * 109.46826 * 330.00020 * 10 9 7 26 26 H 1.09004 * 109.52315 * 297.50166 * 13 11 10 27 27 H 1.09003 * 109.52454 * 57.62374 * 13 11 10 28 28 H 1.08998 * 109.54229 * 62.88809 * 14 13 11 29 29 H 1.09006 * 109.53954 * 183.06180 * 14 13 11 30 30 H 1.09002 * 109.52348 * 176.88290 * 15 14 13 31 31 H 1.08995 * 109.52558 * 297.01436 * 15 14 13 32 32 H 1.08996 * 109.48119 * 62.37534 * 16 15 14 33 33 H 1.09000 * 109.47761 * 182.40867 * 16 15 14 34 34 H 1.08997 * 109.47275 * 216.06595 * 18 9 7 35 35 H 1.08994 * 109.47048 * 336.07074 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5179 2.0348 1.3998 5 1 3.5376 1.4460 -0.7200 6 1 1.4378 2.6584 -0.6799 7 6 2.0102 -1.2022 0.0005 8 1 1.5235 -2.1069 -0.3325 9 7 3.3120 -1.2410 0.4234 10 6 4.2972 -2.0390 -0.3106 11 6 4.9440 -1.1774 -1.3971 12 1 5.4391 -0.3226 -0.9362 13 6 5.9731 -2.0113 -2.1647 14 6 6.5725 -1.1602 -3.2884 15 6 5.4421 -0.6570 -4.1913 16 6 4.4334 0.1246 -3.3453 17 8 3.9381 -0.7155 -2.3008 18 6 3.7197 -0.4845 1.6100 19 6 3.7022 -1.4047 2.8323 20 9 4.6515 -2.4188 2.6661 21 9 4.0078 -0.6631 3.9786 22 9 2.4315 -1.9734 2.9697 23 1 -0.4850 0.8401 -0.0004 24 1 5.0648 -2.3920 0.3780 25 1 3.8019 -2.8935 -0.7716 26 1 6.7649 -2.3279 -1.4857 27 1 5.4863 -2.8885 -2.5909 28 1 7.1021 -0.3098 -2.8590 29 1 7.2663 -1.7644 -3.8730 30 1 5.8539 -0.0050 -4.9616 31 1 4.9450 -1.5061 -4.6602 32 1 4.9221 0.9963 -2.9102 33 1 3.6048 0.4487 -3.9750 34 1 4.7267 -0.0939 1.4636 35 1 3.0284 0.3431 1.7684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686011932.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:00 Heat of formation + Delta-G solvation = -206.447125 kcal Electronic energy + Delta-G solvation = -22286.182268 eV Core-core repulsion = 18482.836535 eV Total energy + Delta-G solvation = -3803.345734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.81981 -48.37940 -48.27952 -40.24507 -37.74452 -34.35264 -33.98555 -32.69996 -30.08446 -28.10909 -25.47163 -24.76221 -23.85952 -22.06858 -21.08019 -19.57249 -19.29025 -19.14488 -17.76146 -17.20241 -16.83791 -16.71466 -16.09902 -15.48210 -15.30399 -15.27196 -15.13502 -14.81278 -14.62414 -14.60546 -14.47930 -14.47263 -14.16514 -13.78220 -13.37311 -13.00322 -12.98733 -12.67619 -12.24491 -12.11131 -12.04902 -11.86663 -11.80747 -11.51029 -11.07084 -10.63833 -10.13032 -8.91322 -8.16956 -5.65064 1.27870 1.43090 1.55683 2.03663 2.43313 2.74551 3.10281 3.14331 3.26282 3.35077 3.68958 3.96229 4.03384 4.05609 4.20005 4.27601 4.34927 4.42237 4.52574 4.62000 4.71443 4.78286 4.91479 5.00117 5.10464 5.16725 5.21906 5.28269 5.48664 5.90885 6.21021 6.62891 6.87830 7.52807 7.88732 9.02110 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.009233 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.884129 B = 3031.783468 C = 3956.882219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.006 4.006 3 Si 0.927 3.073 4 H -0.272 1.272 5 H -0.240 1.240 6 H -0.311 1.311 7 C -0.237 4.237 8 H 0.038 0.962 9 N -0.587 5.587 10 C 0.145 3.855 11 C 0.069 3.931 12 H 0.045 0.955 13 C -0.144 4.144 14 C -0.116 4.116 15 C -0.148 4.148 16 C 0.047 3.953 17 O -0.378 6.378 18 C 0.089 3.911 19 C 0.421 3.579 20 F -0.188 7.188 21 F -0.197 7.197 22 F -0.194 7.194 23 H 0.262 0.738 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.902 -0.248 -2.864 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.203 4.203 3 Si 0.755 3.245 4 H -0.199 1.199 5 H -0.163 1.163 6 H -0.240 1.240 7 C -0.367 4.367 8 H 0.056 0.944 9 N -0.305 5.305 10 C 0.021 3.979 11 C 0.010 3.990 12 H 0.063 0.937 13 C -0.183 4.183 14 C -0.154 4.154 15 C -0.185 4.185 16 C -0.030 4.030 17 O -0.297 6.297 18 C -0.041 4.041 19 C 0.363 3.637 20 F -0.170 7.170 21 F -0.179 7.179 22 F -0.175 7.175 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.557 -0.266 -2.877 15.823 hybrid contribution -0.277 0.763 0.201 0.836 sum 15.281 0.497 -2.676 15.521 Atomic orbital electron populations 1.69992 1.07904 1.27389 1.53557 1.26055 0.95429 1.01062 0.97727 0.86163 0.80499 0.80041 0.77837 1.19904 1.16267 1.23962 1.18285 0.86026 0.92690 1.39672 0.94399 1.43966 1.07018 1.55646 1.23877 1.21408 0.91515 0.92959 0.92009 1.22840 0.89097 0.96436 0.90655 0.93712 1.22156 0.98607 0.98901 0.98595 1.21566 0.97289 0.99879 0.96644 1.22133 0.96936 1.00841 0.98618 1.22660 0.97920 0.92797 0.89659 1.88219 1.33920 1.67266 1.40330 1.22842 1.04027 0.93400 0.83848 1.22771 0.72759 0.81751 0.86440 1.93070 1.65129 1.63271 1.95491 1.93102 1.93075 1.76802 1.54906 1.93151 1.41651 1.86415 1.96309 0.92914 0.89143 0.92922 0.89147 0.91598 0.91615 0.89706 0.89430 0.91715 0.94232 0.90133 0.86417 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.90 13.97 21.65 0.30 -58.59 16 2 C -0.01 -0.33 5.25 84.86 0.45 0.12 16 3 Si 0.93 44.09 25.40 68.60 1.74 45.83 16 4 H -0.27 -12.09 6.46 99.48 0.64 -11.44 16 5 H -0.24 -10.55 7.05 99.48 0.70 -9.85 16 6 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 7 C -0.24 -13.07 8.97 84.03 0.75 -12.31 16 8 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 9 N -0.59 -25.98 1.83 -701.99 -1.29 -27.26 16 10 C 0.15 5.27 5.26 86.38 0.45 5.73 16 11 C 0.07 2.26 2.92 30.62 0.09 2.35 16 12 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 13 C -0.14 -3.46 5.42 30.68 0.17 -3.30 16 14 C -0.12 -2.37 6.03 30.71 0.19 -2.18 16 15 C -0.15 -3.39 6.14 30.68 0.19 -3.20 16 16 C 0.05 1.44 6.84 72.01 0.49 1.94 16 17 O -0.38 -14.87 9.63 -148.98 -1.43 -16.30 16 18 C 0.09 3.50 4.31 86.38 0.37 3.87 16 19 C 0.42 16.15 3.30 71.98 0.24 16.39 16 20 F -0.19 -6.56 15.81 44.97 0.71 -5.85 16 21 F -0.20 -6.99 17.32 44.97 0.78 -6.21 16 22 F -0.19 -8.84 16.93 44.97 0.76 -8.08 16 23 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 24 H 0.09 2.75 6.76 -2.39 -0.02 2.73 16 25 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 26 H 0.09 1.75 8.14 -2.38 -0.02 1.74 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.12 3.70 8.12 -2.39 -0.02 3.68 16 35 H 0.08 3.63 3.93 -2.39 -0.01 3.62 16 Total: -1.00 -65.67 292.43 5.98 -59.69 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.02 Total: 7.37 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 3.39 Total: 9.40 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -0.98 Total: -85.86 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -1.43 Total: -16.30 kcal Atomic # 9 Polarization: -22.39 SS G_CDS: 2.25 Total: -20.14 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.74 Total: 45.83 kcal Total: -65.67 5.98 -59.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686011932.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.754 kcal (2) G-P(sol) polarization free energy of solvation -65.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds