Wall clock time and date at job start Mon Mar 30 2020 04:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.48522 * 110.99850 * 298.13026 * 11 10 9 13 13 C 1.54171 * 111.93736 * 192.47246 * 12 11 10 14 14 O 1.39992 * 113.15714 * 318.77244 * 13 12 11 15 15 C 1.44538 * 112.90037 * 94.46441 * 14 13 12 16 16 H 1.08997 * 109.10339 * 40.91421 * 15 14 13 17 17 C 1.52998 * 109.05172 * 159.98712 * 15 14 13 18 18 F 1.39904 * 109.46882 * 181.81245 * 17 15 14 19 19 F 1.39901 * 109.47288 * 301.81127 * 17 15 14 20 20 F 1.39897 * 109.47615 * 61.81697 * 17 15 14 21 21 C 1.46282 * 111.34380 * 280.43154 * 15 14 13 22 22 C 1.44061 * 110.99911 * 169.99990 * 11 10 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09009 * 108.98829 * 313.09950 * 12 11 10 29 29 H 1.08998 * 108.99263 * 71.83383 * 12 11 10 30 30 H 1.08997 * 108.74526 * 197.82909 * 13 12 11 31 31 H 1.08994 * 108.65239 * 79.65566 * 13 12 11 32 32 H 1.08999 * 108.97353 * 299.00921 * 21 15 14 33 33 H 1.09000 * 108.97478 * 180.31390 * 21 15 14 34 34 H 1.09008 * 109.70424 * 339.38436 * 22 11 10 35 35 H 1.09002 * 109.70810 * 99.99811 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.6780 -5.0687 1.2213 13 6 0.1436 -6.5038 1.3993 14 8 -0.2885 -7.0830 0.2003 15 6 0.7326 -7.8824 -0.4381 16 1 1.2645 -8.4548 0.3217 17 6 0.0683 -8.8498 -1.4199 18 9 1.0455 -9.6566 -2.0127 19 9 -0.8477 -9.6545 -0.7339 20 9 -0.6001 -8.1229 -2.4108 21 6 1.6881 -7.0453 -1.1634 22 6 2.3997 -6.0436 -0.2347 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 1.2795 -4.8039 2.0910 29 1 -0.1656 -4.3819 1.1531 30 1 -0.6920 -6.4822 2.0988 31 1 0.9366 -7.1214 1.8208 32 1 1.1581 -6.4936 -1.9398 33 1 2.4351 -7.6854 -1.6329 34 1 3.3143 -5.6880 -0.7095 35 1 2.6405 -6.5273 0.7119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686833985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:07 Heat of formation + Delta-G solvation = -194.696331 kcal Electronic energy + Delta-G solvation = -21324.341060 eV Core-core repulsion = 17521.504879 eV Total energy + Delta-G solvation = -3802.836181 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.18890 -47.73017 -47.59504 -39.77172 -36.49830 -33.77200 -32.95991 -30.28694 -28.56769 -27.30136 -24.30023 -23.81312 -21.92267 -21.09009 -19.82410 -18.67586 -18.36408 -18.15399 -16.78487 -16.40944 -15.61693 -15.12854 -14.70072 -14.52171 -14.48959 -14.30015 -14.08524 -13.80081 -13.78109 -13.70032 -13.52066 -13.22513 -12.74290 -12.31311 -12.16609 -11.57189 -11.22688 -11.14418 -11.00105 -10.86686 -10.83134 -10.55160 -9.88509 -9.74386 -9.38119 -9.14277 -8.34100 -7.70057 -6.00049 -4.03005 2.42232 3.26409 3.32519 3.37400 3.39211 3.63910 3.89994 4.23319 4.37814 4.48653 4.70140 4.80124 5.03337 5.10223 5.26877 5.33015 5.35871 5.41246 5.58307 5.72491 5.89190 6.12787 6.19262 6.37772 6.43902 6.89392 6.92877 7.42005 7.59654 7.79648 7.87480 8.06944 8.41713 9.04137 9.60734 11.11175 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.039207 B = 0.004013 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.987073 B = 6975.896174 C = 7028.171583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.068 3.932 11 N -0.550 5.550 12 C 0.035 3.965 13 C 0.063 3.937 14 O -0.341 6.341 15 C 0.060 3.940 16 H 0.095 0.905 17 C 0.459 3.541 18 F -0.180 7.180 19 F -0.180 7.180 20 F -0.170 7.170 21 C -0.161 4.161 22 C 0.072 3.928 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.025 0.975 26 H 0.062 0.938 27 H 0.019 0.981 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.475 -18.607 0.960 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.058 4.058 11 N -0.275 5.275 12 C -0.092 4.092 13 C -0.014 4.014 14 O -0.259 6.259 15 C 0.001 3.999 16 H 0.112 0.888 17 C 0.405 3.595 18 F -0.161 7.161 19 F -0.161 7.161 20 F -0.152 7.152 21 C -0.200 4.200 22 C -0.058 4.058 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.806 -18.485 0.497 18.580 hybrid contribution 1.123 0.786 0.616 1.503 sum 2.929 -17.699 1.113 17.974 Atomic orbital electron populations 1.69962 1.06020 1.26716 1.50407 1.24988 0.94814 0.99145 0.95265 0.86665 0.79583 0.83209 0.78559 1.21257 1.20335 1.20233 1.21147 0.92889 0.91111 1.51202 0.92907 1.19103 0.93978 0.90069 0.97896 1.22408 0.96484 0.88025 0.98841 1.60637 1.26259 1.02780 1.37831 1.23155 0.98508 0.96689 0.90889 1.22519 0.99900 0.93516 0.85479 1.87852 1.34226 1.65393 1.38408 1.22151 0.90111 0.92402 0.95251 0.88750 1.20376 0.77018 0.80612 0.81489 1.93182 1.62757 1.75005 1.85173 1.93188 1.68343 1.75251 1.79340 1.93222 1.81293 1.77059 1.63583 1.21349 0.98540 0.98958 1.01138 1.21552 0.94984 0.92053 0.97194 0.92910 0.96523 0.95631 0.91916 0.96278 0.93796 0.89085 0.88587 0.93495 0.88227 0.89930 0.90276 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.69 4.80 -27.89 -0.13 0.56 16 10 C 0.07 1.39 4.76 -3.82 -0.02 1.37 16 11 N -0.55 -9.49 4.17 -234.12 -0.98 -10.47 16 12 C 0.04 0.55 5.19 -2.31 -0.01 0.54 16 13 C 0.06 0.79 6.06 37.77 0.23 1.02 16 14 O -0.34 -4.85 10.03 -32.90 -0.33 -5.18 16 15 C 0.06 0.71 2.14 -29.93 -0.06 0.64 16 16 H 0.09 0.86 7.47 -51.93 -0.39 0.48 16 17 C 0.46 5.58 2.82 37.16 0.10 5.68 16 18 F -0.18 -2.00 16.64 2.25 0.04 -1.96 16 19 F -0.18 -2.26 17.23 2.25 0.04 -2.22 16 20 F -0.17 -2.41 16.61 2.25 0.04 -2.37 16 21 C -0.16 -1.96 4.72 -29.39 -0.14 -2.10 16 22 C 0.07 0.96 5.42 -4.81 -0.03 0.93 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.44 6.71 -51.92 -0.35 0.09 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.25 7.78 -51.93 -0.40 0.85 16 27 H 0.02 0.38 8.07 -51.93 -0.42 -0.04 16 28 H 0.04 0.67 7.99 -51.92 -0.41 0.26 16 29 H 0.09 1.66 7.01 -51.93 -0.36 1.30 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 32 H 0.10 1.44 7.57 -51.93 -0.39 1.05 16 33 H 0.08 0.81 7.60 -51.93 -0.39 0.41 16 34 H 0.08 1.02 7.41 -51.92 -0.38 0.63 16 35 H 0.03 0.40 6.89 -51.93 -0.36 0.05 16 LS Contribution 292.72 15.07 4.41 4.41 Total: -1.00 -30.51 292.72 -6.13 -36.65 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: -4.60 Total: -4.55 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.47 Total: -4.76 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.24 Total: -36.50 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.33 Total: -5.18 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.11 Total: -6.55 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.51 -6.13 -36.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686833985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.051 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds