Wall clock time and date at job start Mon Mar 30 2020 04:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.48522 * 110.99850 * 298.13026 * 11 10 9 13 13 C 1.54171 * 111.93736 * 192.47246 * 12 11 10 14 14 O 1.39992 * 113.15714 * 318.77244 * 13 12 11 15 15 C 1.44538 * 112.90037 * 94.46441 * 14 13 12 16 16 H 1.08997 * 109.10339 * 40.91421 * 15 14 13 17 17 C 1.52998 * 109.05172 * 159.98712 * 15 14 13 18 18 F 1.39904 * 109.46882 * 181.81245 * 17 15 14 19 19 F 1.39901 * 109.47288 * 301.81127 * 17 15 14 20 20 F 1.39897 * 109.47615 * 61.81697 * 17 15 14 21 21 C 1.46282 * 111.34380 * 280.43154 * 15 14 13 22 22 C 1.44061 * 110.99911 * 169.99990 * 11 10 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 27 27 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 28 28 H 1.09009 * 108.98829 * 313.09950 * 12 11 10 29 29 H 1.08998 * 108.99263 * 71.83383 * 12 11 10 30 30 H 1.08997 * 108.74526 * 197.82909 * 13 12 11 31 31 H 1.08994 * 108.65239 * 79.65566 * 13 12 11 32 32 H 1.08999 * 108.97353 * 299.00921 * 21 15 14 33 33 H 1.09000 * 108.97478 * 180.31390 * 21 15 14 34 34 H 1.09008 * 109.70424 * 339.38436 * 22 11 10 35 35 H 1.09002 * 109.70810 * 99.99811 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.6780 -5.0687 1.2213 13 6 0.1436 -6.5038 1.3993 14 8 -0.2885 -7.0830 0.2003 15 6 0.7326 -7.8824 -0.4381 16 1 1.2645 -8.4548 0.3217 17 6 0.0683 -8.8498 -1.4199 18 9 1.0455 -9.6566 -2.0127 19 9 -0.8477 -9.6545 -0.7339 20 9 -0.6001 -8.1229 -2.4108 21 6 1.6881 -7.0453 -1.1634 22 6 2.3997 -6.0436 -0.2347 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8719 -3.6044 -0.8906 27 1 2.8719 -3.6044 0.8894 28 1 1.2795 -4.8039 2.0910 29 1 -0.1656 -4.3819 1.1531 30 1 -0.6920 -6.4822 2.0988 31 1 0.9366 -7.1214 1.8208 32 1 1.1581 -6.4936 -1.9398 33 1 2.4351 -7.6854 -1.6329 34 1 3.3143 -5.6880 -0.7095 35 1 2.6405 -6.5273 0.7119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686833985.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:06 Heat of formation + Delta-G solvation = -214.999931 kcal Electronic energy + Delta-G solvation = -21325.221490 eV Core-core repulsion = 17521.504879 eV Total energy + Delta-G solvation = -3803.716611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.14608 -48.65598 -48.60573 -40.84218 -37.83369 -35.25599 -34.55671 -32.03050 -29.71916 -28.69089 -26.04898 -24.92718 -23.18437 -22.39746 -21.24767 -19.65058 -19.33345 -19.13013 -18.56182 -17.71982 -16.84808 -16.53666 -16.31899 -15.67263 -15.51144 -15.38235 -15.05924 -14.95840 -14.85995 -14.78095 -14.75515 -14.65691 -14.15267 -13.79753 -13.47533 -13.20046 -12.83673 -12.72146 -12.41130 -12.25936 -12.07697 -11.89159 -11.64513 -11.28351 -11.19457 -10.79513 -10.52880 -9.03463 -8.18852 -6.30644 1.40725 1.43934 1.49279 1.51835 2.32108 2.41051 2.70707 2.96354 3.03899 3.14635 3.45116 3.81414 3.84171 3.99463 4.08245 4.23296 4.31544 4.39080 4.51161 4.62770 4.71385 4.72919 4.84459 5.05115 5.09717 5.20488 5.47201 5.67216 5.79632 5.94503 6.11087 6.34315 6.49763 6.87493 7.38840 8.93065 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.039207 B = 0.004013 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.987073 B = 6975.896174 C = 7028.171583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.035 3.965 10 C 0.086 3.914 11 N -0.568 5.568 12 C 0.034 3.966 13 C 0.068 3.932 14 O -0.367 6.367 15 C 0.057 3.943 16 H 0.133 0.867 17 C 0.461 3.539 18 F -0.172 7.172 19 F -0.182 7.182 20 F -0.187 7.187 21 C -0.155 4.155 22 C 0.069 3.931 23 H 0.263 0.737 24 H -0.006 1.006 25 H -0.015 1.015 26 H 0.065 0.935 27 H 0.026 0.974 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -19.748 1.636 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.210 1.210 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.003 4.003 10 C -0.041 4.041 11 N -0.293 5.293 12 C -0.094 4.094 13 C -0.009 4.009 14 O -0.285 6.285 15 C -0.002 4.002 16 H 0.150 0.850 17 C 0.406 3.594 18 F -0.153 7.153 19 F -0.164 7.164 20 F -0.169 7.169 21 C -0.194 4.194 22 C -0.059 4.059 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.004 0.996 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.774 -19.655 1.170 20.048 hybrid contribution 0.481 1.089 0.380 1.249 sum 4.255 -18.566 1.550 19.110 Atomic orbital electron populations 1.70117 1.07925 1.27789 1.51460 1.25974 0.95689 1.03370 0.94649 0.85492 0.78233 0.78025 0.79226 1.21008 1.18981 1.19178 1.21624 0.93564 0.92291 1.50883 0.91986 1.18928 0.94289 0.92233 0.94810 1.22016 0.94962 0.87935 0.99179 1.60486 1.27150 1.02755 1.38944 1.23155 0.97109 0.98612 0.90513 1.22541 1.01574 0.91472 0.85314 1.87836 1.35639 1.65787 1.39235 1.22364 0.89592 0.92309 0.95895 0.84954 1.20469 0.76973 0.80684 0.81234 1.93197 1.62261 1.74766 1.85081 1.93183 1.68567 1.75296 1.79321 1.93192 1.81762 1.77542 1.64384 1.21289 0.99031 0.98860 1.00197 1.21677 0.94525 0.90901 0.98811 0.92831 0.98802 0.99640 0.91685 0.95626 0.93223 0.93131 0.87080 0.89962 0.91233 0.86943 0.89599 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 2 C 0.00 0.06 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.87 4.80 29.85 0.14 2.01 16 10 C 0.09 3.51 4.76 86.30 0.41 3.92 16 11 N -0.57 -19.38 4.17 -894.62 -3.73 -23.12 16 12 C 0.03 1.06 5.19 86.39 0.45 1.51 16 13 C 0.07 1.55 6.06 72.38 0.44 1.99 16 14 O -0.37 -9.84 10.03 -140.65 -1.41 -11.25 16 15 C 0.06 1.18 2.14 28.52 0.06 1.24 16 16 H 0.13 1.78 7.47 -2.39 -0.02 1.76 16 17 C 0.46 10.32 2.82 71.98 0.20 10.53 16 18 F -0.17 -3.39 16.64 44.97 0.75 -2.64 16 19 F -0.18 -4.25 17.23 44.97 0.77 -3.48 16 20 F -0.19 -5.23 16.61 44.97 0.75 -4.48 16 21 C -0.16 -3.41 4.72 28.87 0.14 -3.27 16 22 C 0.07 1.67 5.42 87.18 0.47 2.14 16 23 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 24 H -0.01 -0.36 6.71 -2.38 -0.02 -0.38 16 25 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 26 H 0.06 2.59 7.78 -2.39 -0.02 2.57 16 27 H 0.03 1.00 8.07 -2.39 -0.02 0.98 16 28 H 0.05 1.48 7.99 -2.38 -0.02 1.46 16 29 H 0.05 1.96 7.01 -2.39 -0.02 1.94 16 30 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.08 1.31 6.56 -2.39 -0.02 1.29 16 32 H 0.07 1.98 7.57 -2.39 -0.02 1.96 16 33 H 0.11 1.80 7.60 -2.39 -0.02 1.78 16 34 H 0.09 1.97 7.41 -2.38 -0.02 1.95 16 35 H 0.06 1.19 6.89 -2.39 -0.02 1.17 16 Total: -1.00 -68.15 292.72 3.54 -64.61 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.10 Total: 1.65 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 3.01 Total: -10.20 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -3.45 Total: -80.44 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.41 Total: -11.25 kcal Atomic # 9 Polarization: -12.86 SS G_CDS: 2.27 Total: -10.59 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -68.15 3.54 -64.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686833985.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.387 kcal (2) G-P(sol) polarization free energy of solvation -68.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds