Wall clock time and date at job start Mon Mar 30 2020 04:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00530 * 2 1 4 4 H 1.48494 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46844 * 300.00123 * 3 2 1 6 6 H 1.48503 * 109.47011 * 59.99594 * 3 2 1 7 7 C 1.37881 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47017 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46836 * 180.02562 * 10 9 7 12 12 C 1.47391 * 110.99984 * 297.19057 * 11 10 9 13 13 C 1.51050 * 111.55455 * 193.26892 * 12 11 10 14 14 O 1.43441 * 107.55603 * 94.02342 * 13 12 11 15 15 C 1.36616 * 117.84629 * 277.90419 * 14 13 12 16 16 H 1.09000 * 109.21202 * 300.74875 * 15 14 13 17 17 C 1.53001 * 109.21563 * 181.37806 * 15 14 13 18 18 F 1.39905 * 109.46741 * 60.00031 * 17 15 14 19 19 F 1.39900 * 109.46928 * 179.97438 * 17 15 14 20 20 F 1.39902 * 109.47203 * 299.99942 * 17 15 14 21 21 C 1.54579 * 110.69299 * 61.05162 * 15 14 13 22 22 C 1.48030 * 110.99768 * 170.00336 * 11 10 9 23 23 H 0.97006 * 119.99800 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46836 * 60.00190 * 9 7 2 25 25 H 1.08999 * 109.47427 * 299.99993 * 9 7 2 26 26 H 1.09004 * 109.46828 * 60.00595 * 10 9 7 27 27 H 1.08999 * 109.47351 * 300.00450 * 10 9 7 28 28 H 1.08996 * 109.06756 * 313.79857 * 12 11 10 29 29 H 1.08998 * 109.06495 * 72.80586 * 12 11 10 30 30 H 1.09003 * 109.83541 * 213.53770 * 13 12 11 31 31 H 1.09002 * 109.84169 * 334.44160 * 13 12 11 32 32 H 1.09007 * 109.36634 * 166.70899 * 21 15 14 33 33 H 1.08999 * 109.64436 * 46.51827 * 21 15 14 34 34 H 1.09002 * 108.75129 * 204.94146 * 22 11 10 35 35 H 1.09003 * 108.75370 * 323.17882 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5105 -4.9343 0.0020 12 6 0.7024 -5.0771 1.2263 13 6 0.2019 -6.4917 1.3990 14 8 1.1394 -7.1832 2.2360 15 6 2.2652 -7.6894 1.6505 16 1 1.9779 -8.3996 0.8752 17 6 3.1024 -8.4105 2.7087 18 9 2.3534 -9.4531 3.2649 19 9 4.2568 -8.9317 2.1145 20 9 3.4623 -7.5068 3.7142 21 6 3.1077 -6.5582 1.0179 22 6 2.4238 -6.0743 -0.2382 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5574 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8724 -3.6040 0.8910 27 1 2.8711 -3.6048 -0.8890 28 1 1.3119 -4.8074 2.0887 29 1 -0.1521 -4.4027 1.1696 30 1 -0.7797 -6.4815 1.8728 31 1 0.1388 -6.9830 0.4281 32 1 4.0978 -6.9405 0.7696 33 1 3.2010 -5.7325 1.7233 34 1 1.8514 -6.8979 -0.6650 35 1 3.1849 -5.7684 -0.9559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686833987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:13 Heat of formation + Delta-G solvation = -196.975036 kcal Electronic energy + Delta-G solvation = -21391.514140 eV Core-core repulsion = 17588.579147 eV Total energy + Delta-G solvation = -3802.934993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.22691 -47.77340 -47.65830 -40.22548 -36.64694 -33.39612 -32.88733 -30.53175 -28.37151 -27.49923 -24.37964 -23.95311 -22.01584 -21.31978 -19.56099 -18.73918 -18.44752 -18.20775 -16.79210 -16.49402 -15.96413 -15.19775 -14.91549 -14.56689 -14.50574 -14.28766 -14.13641 -14.03842 -13.85296 -13.84657 -13.56271 -12.83638 -12.62112 -12.27832 -12.08714 -11.73773 -11.55069 -11.21575 -11.03670 -10.87276 -10.78143 -10.51124 -9.94138 -9.82660 -9.41211 -9.14991 -8.37417 -7.82271 -6.03257 -4.05662 2.31111 3.20489 3.29279 3.36945 3.40675 3.67504 3.81480 4.19461 4.37376 4.46183 4.49330 4.69654 4.95518 5.18213 5.26318 5.33389 5.34524 5.37213 5.48060 5.76239 5.96394 6.06510 6.16375 6.33792 6.40439 6.88171 7.02200 7.34377 7.48455 7.71410 7.82700 8.01646 8.38997 9.01483 9.58489 11.08166 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.035680 B = 0.004156 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.566244 B = 6735.654785 C = 6948.150940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.064 3.936 11 N -0.542 5.542 12 C 0.023 3.977 13 C 0.073 3.927 14 O -0.379 6.379 15 C 0.072 3.928 16 H 0.088 0.912 17 C 0.461 3.539 18 F -0.179 7.179 19 F -0.178 7.178 20 F -0.174 7.174 21 C -0.192 4.192 22 C 0.053 3.947 23 H 0.260 0.740 24 H 0.025 0.975 25 H 0.017 0.983 26 H 0.021 0.979 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -17.796 2.780 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.063 4.063 11 N -0.267 5.267 12 C -0.105 4.105 13 C -0.001 4.001 14 O -0.298 6.298 15 C 0.011 3.989 16 H 0.106 0.894 17 C 0.407 3.593 18 F -0.160 7.160 19 F -0.159 7.159 20 F -0.156 7.156 21 C -0.232 4.232 22 C -0.075 4.075 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.234 -17.698 2.609 18.179 hybrid contribution 1.255 0.889 0.594 1.648 sum 4.489 -16.809 3.203 17.691 Atomic orbital electron populations 1.69974 1.06030 1.26521 1.50691 1.24983 0.94825 0.99196 0.95233 0.86546 0.80094 0.83801 0.77611 1.19778 1.20963 1.21006 1.21217 0.93016 0.91034 1.50869 0.92761 1.19110 0.94000 0.90166 0.97800 1.22411 0.96759 0.88076 0.99034 1.62373 1.25165 1.02662 1.36488 1.22524 0.99450 0.96617 0.91896 1.22770 0.91039 0.91414 0.94886 1.86357 1.30429 1.74073 1.38896 1.22284 0.88025 0.96438 0.92141 0.89433 1.20385 0.78893 0.77642 0.82408 1.93193 1.76174 1.59865 1.86815 1.93180 1.51542 1.87450 1.83744 1.93208 1.92277 1.67063 1.63006 1.22969 1.00312 0.98933 1.00976 1.21992 0.95505 0.94746 0.95289 0.93021 0.95695 0.96492 0.96105 0.91906 0.93228 0.88523 0.87099 0.91102 0.89502 0.89267 0.91393 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.67 4.82 -27.88 -0.13 0.54 16 10 C 0.06 1.28 4.77 -3.82 -0.02 1.27 16 11 N -0.54 -9.02 4.77 -235.71 -1.12 -10.14 16 12 C 0.02 0.35 4.42 -4.54 -0.02 0.33 16 13 C 0.07 0.89 6.50 36.18 0.24 1.12 16 14 O -0.38 -4.93 9.38 -21.74 -0.20 -5.13 16 15 C 0.07 0.83 2.28 -25.90 -0.06 0.77 16 16 H 0.09 0.82 7.72 -51.93 -0.40 0.42 16 17 C 0.46 5.53 2.83 37.16 0.11 5.63 16 18 F -0.18 -2.22 17.24 2.25 0.04 -2.18 16 19 F -0.18 -2.00 16.54 2.25 0.04 -1.96 16 20 F -0.17 -2.38 16.99 2.25 0.04 -2.35 16 21 C -0.19 -2.32 4.73 -26.92 -0.13 -2.45 16 22 C 0.05 0.69 5.15 -4.21 -0.02 0.67 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.45 6.76 -51.93 -0.35 0.09 16 26 H 0.02 0.42 7.71 -51.93 -0.40 0.02 16 27 H 0.06 1.25 7.80 -51.93 -0.40 0.84 16 28 H 0.05 0.84 7.04 -51.93 -0.37 0.48 16 29 H 0.10 1.64 7.07 -51.93 -0.37 1.27 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.77 6.78 -51.93 -0.35 0.42 16 32 H 0.09 0.91 7.43 -51.92 -0.39 0.52 16 33 H 0.09 1.28 6.81 -51.93 -0.35 0.93 16 34 H 0.07 0.76 6.55 -51.93 -0.34 0.42 16 35 H 0.08 1.00 7.65 -51.93 -0.40 0.61 16 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -29.81 290.79 -6.07 -35.89 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -4.51 Total: -3.76 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.45 Total: -5.43 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.39 Total: -35.89 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.20 Total: -5.13 kcal Atomic # 9 Polarization: -6.61 SS G_CDS: 0.11 Total: -6.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.81 -6.07 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686833987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.090 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds