Wall clock time and date at job start Mon Mar 30 2020 04:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00530 * 2 1 4 4 H 1.48494 * 109.47550 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46844 * 300.00123 * 3 2 1 6 6 H 1.48503 * 109.47011 * 59.99594 * 3 2 1 7 7 C 1.37881 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99854 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47017 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46836 * 180.02562 * 10 9 7 12 12 C 1.47391 * 110.99984 * 297.19057 * 11 10 9 13 13 C 1.51050 * 111.55455 * 193.26892 * 12 11 10 14 14 O 1.43441 * 107.55603 * 94.02342 * 13 12 11 15 15 C 1.36616 * 117.84629 * 277.90419 * 14 13 12 16 16 H 1.09000 * 109.21202 * 300.74875 * 15 14 13 17 17 C 1.53001 * 109.21563 * 181.37806 * 15 14 13 18 18 F 1.39905 * 109.46741 * 60.00031 * 17 15 14 19 19 F 1.39900 * 109.46928 * 179.97438 * 17 15 14 20 20 F 1.39902 * 109.47203 * 299.99942 * 17 15 14 21 21 C 1.54579 * 110.69299 * 61.05162 * 15 14 13 22 22 C 1.48030 * 110.99768 * 170.00336 * 11 10 9 23 23 H 0.97006 * 119.99800 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46836 * 60.00190 * 9 7 2 25 25 H 1.08999 * 109.47427 * 299.99993 * 9 7 2 26 26 H 1.09004 * 109.46828 * 60.00595 * 10 9 7 27 27 H 1.08999 * 109.47351 * 300.00450 * 10 9 7 28 28 H 1.08996 * 109.06756 * 313.79857 * 12 11 10 29 29 H 1.08998 * 109.06495 * 72.80586 * 12 11 10 30 30 H 1.09003 * 109.83541 * 213.53770 * 13 12 11 31 31 H 1.09002 * 109.84169 * 334.44160 * 13 12 11 32 32 H 1.09007 * 109.36634 * 166.70899 * 21 15 14 33 33 H 1.08999 * 109.64436 * 46.51827 * 21 15 14 34 34 H 1.09002 * 108.75129 * 204.94146 * 22 11 10 35 35 H 1.09003 * 108.75370 * 323.17882 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5105 -4.9343 0.0020 12 6 0.7024 -5.0771 1.2263 13 6 0.2019 -6.4917 1.3990 14 8 1.1394 -7.1832 2.2360 15 6 2.2652 -7.6894 1.6505 16 1 1.9779 -8.3996 0.8752 17 6 3.1024 -8.4105 2.7087 18 9 2.3534 -9.4531 3.2649 19 9 4.2568 -8.9317 2.1145 20 9 3.4623 -7.5068 3.7142 21 6 3.1077 -6.5582 1.0179 22 6 2.4238 -6.0743 -0.2382 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5574 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8724 -3.6040 0.8910 27 1 2.8711 -3.6048 -0.8890 28 1 1.3119 -4.8074 2.0887 29 1 -0.1521 -4.4027 1.1696 30 1 -0.7797 -6.4815 1.8728 31 1 0.1388 -6.9830 0.4281 32 1 4.0978 -6.9405 0.7696 33 1 3.2010 -5.7325 1.7233 34 1 1.8514 -6.8979 -0.6650 35 1 3.1849 -5.7684 -0.9559 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686833987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:12 Heat of formation + Delta-G solvation = -216.520684 kcal Electronic energy + Delta-G solvation = -21392.361703 eV Core-core repulsion = 17588.579147 eV Total energy + Delta-G solvation = -3803.782556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.17355 -48.69629 -48.64596 -41.27471 -37.95693 -35.23951 -34.10519 -32.23966 -29.52610 -28.90532 -26.10018 -25.08618 -23.00202 -22.96683 -20.89770 -19.70109 -19.40749 -19.18339 -18.62795 -17.56268 -17.27840 -16.58594 -16.41026 -15.88527 -15.53957 -15.47194 -15.22531 -15.08612 -14.96069 -14.81728 -14.79957 -14.24794 -13.97733 -13.75858 -13.42282 -13.32674 -12.86621 -12.81636 -12.56457 -12.27849 -12.22231 -11.83687 -11.71275 -11.28768 -11.18556 -10.83198 -10.54761 -9.18708 -8.20580 -6.31277 1.38648 1.39943 1.40377 1.53229 2.26395 2.39801 2.74893 2.89576 2.96205 3.13393 3.44201 3.55882 3.77811 3.91329 4.08818 4.25742 4.32581 4.36364 4.46000 4.55255 4.64606 4.81375 4.88298 5.00223 5.08712 5.11708 5.45729 5.65379 5.77308 6.00098 6.09611 6.28652 6.34447 6.86050 7.37959 8.91597 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.035680 B = 0.004156 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.566244 B = 6735.654785 C = 6948.150940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.035 3.965 10 C 0.081 3.919 11 N -0.551 5.551 12 C 0.026 3.974 13 C 0.083 3.917 14 O -0.391 6.391 15 C 0.070 3.930 16 H 0.121 0.879 17 C 0.462 3.538 18 F -0.181 7.181 19 F -0.172 7.172 20 F -0.188 7.188 21 C -0.186 4.186 22 C 0.052 3.948 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.006 1.006 26 H 0.014 0.986 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -18.890 2.243 19.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.046 4.046 11 N -0.275 5.275 12 C -0.102 4.102 13 C 0.009 3.991 14 O -0.310 6.310 15 C 0.010 3.990 16 H 0.138 0.862 17 C 0.408 3.592 18 F -0.162 7.162 19 F -0.153 7.153 20 F -0.170 7.170 21 C -0.226 4.226 22 C -0.075 4.075 23 H 0.072 0.928 24 H 0.014 0.986 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.137 -18.816 2.072 19.377 hybrid contribution 0.969 1.183 0.765 1.710 sum 5.105 -17.633 2.837 18.575 Atomic orbital electron populations 1.70101 1.07721 1.27679 1.51521 1.25910 0.95719 1.03155 0.94660 0.85429 0.79059 0.78933 0.77800 1.18707 1.20244 1.20483 1.21660 0.93463 0.92435 1.50769 0.92404 1.18931 0.94264 0.91882 0.95179 1.22009 0.95313 0.88417 0.98870 1.62261 1.25812 1.02436 1.37007 1.22488 0.98099 0.98895 0.90668 1.22772 0.91359 0.88844 0.96156 1.86350 1.30952 1.74024 1.39665 1.22458 0.87370 0.96679 0.92521 0.86176 1.20478 0.79083 0.77457 0.82215 1.93189 1.76240 1.59914 1.86902 1.93192 1.51272 1.87342 1.83527 1.93184 1.92429 1.67608 1.63750 1.22883 1.01492 0.98377 0.99805 1.22107 0.95569 0.93949 0.95892 0.92761 0.98570 0.98808 0.96763 0.91442 0.95335 0.90911 0.85123 0.89078 0.87516 0.91990 0.88545 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.83 4.82 29.85 0.14 1.97 16 10 C 0.08 3.32 4.77 86.30 0.41 3.73 16 11 N -0.55 -18.02 4.77 -899.66 -4.29 -22.31 16 12 C 0.03 0.82 4.42 85.57 0.38 1.20 16 13 C 0.08 1.84 6.50 71.35 0.46 2.31 16 14 O -0.39 -9.38 9.38 -100.69 -0.94 -10.33 16 15 C 0.07 1.43 2.28 31.13 0.07 1.50 16 16 H 0.12 1.72 7.72 -2.39 -0.02 1.70 16 17 C 0.46 10.15 2.83 71.98 0.20 10.35 16 18 F -0.18 -4.13 17.24 44.97 0.78 -3.35 16 19 F -0.17 -3.46 16.54 44.97 0.74 -2.71 16 20 F -0.19 -4.99 16.99 44.97 0.76 -4.23 16 21 C -0.19 -4.11 4.73 30.48 0.14 -3.97 16 22 C 0.05 1.22 5.15 85.43 0.44 1.66 16 23 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 24 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 25 H -0.01 -0.36 6.76 -2.39 -0.02 -0.38 16 26 H 0.01 0.59 7.71 -2.38 -0.02 0.57 16 27 H 0.07 2.66 7.80 -2.39 -0.02 2.64 16 28 H 0.03 1.01 7.04 -2.39 -0.02 0.99 16 29 H 0.07 2.59 7.07 -2.39 -0.02 2.57 16 30 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 1.68 6.78 -2.39 -0.02 1.66 16 32 H 0.11 1.94 7.43 -2.38 -0.02 1.92 16 33 H 0.06 1.75 6.81 -2.39 -0.02 1.73 16 34 H 0.10 1.77 6.55 -2.39 -0.02 1.76 16 35 H 0.09 1.94 7.65 -2.39 -0.02 1.92 16 Total: -1.00 -65.15 290.79 3.41 -61.74 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.10 Total: 2.30 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 2.95 Total: -11.24 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -4.01 Total: -78.34 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.94 Total: -10.33 kcal Atomic # 9 Polarization: -12.57 SS G_CDS: 2.28 Total: -10.29 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -65.15 3.41 -61.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686833987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.779 kcal (2) G-P(sol) polarization free energy of solvation -65.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds