Wall clock time and date at job start Mon Mar 30 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47010 * 2 1 4 4 C 1.50703 * 109.47142 * 240.00489 * 2 1 3 5 5 H 1.08006 * 119.99383 * 274.15791 * 4 2 1 6 6 C 1.37874 * 120.00411 * 94.15948 * 4 2 1 7 7 N 1.31512 * 120.00233 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99908 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47332 * 84.81774 * 8 6 4 10 10 H 1.48497 * 109.47073 * 204.81931 * 8 6 4 11 11 H 1.48509 * 109.47002 * 324.81919 * 8 6 4 12 12 N 1.46900 * 109.47636 * 120.00144 * 2 1 3 13 13 C 1.47393 * 111.00103 * 176.04739 * 12 2 1 14 14 C 1.51041 * 111.55398 * 84.90387 * 13 12 2 15 15 O 1.43449 * 107.56016 * 94.02703 * 14 13 12 16 16 C 1.36609 * 117.84416 * 277.89706 * 15 14 13 17 17 H 1.08995 * 109.21685 * 300.70407 * 16 15 14 18 18 C 1.52994 * 109.21836 * 181.37109 * 16 15 14 19 19 F 1.39908 * 109.46909 * 60.00451 * 18 16 15 20 20 F 1.39902 * 109.47391 * 180.02562 * 18 16 15 21 21 F 1.39901 * 109.47391 * 300.00484 * 18 16 15 22 22 C 1.54720 * 110.78107 * 61.03789 * 16 15 14 23 23 C 1.48029 * 110.99619 * 303.22858 * 12 2 1 24 24 H 1.09000 * 109.46705 * 185.95015 * 1 2 3 25 25 H 1.09001 * 109.47066 * 305.94673 * 1 2 3 26 26 H 1.09000 * 109.47364 * 65.94788 * 1 2 3 27 27 H 0.96996 * 119.99756 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.06483 * 324.36333 * 13 12 2 29 29 H 1.08999 * 109.05967 * 205.43455 * 13 12 2 30 30 H 1.08994 * 109.84493 * 334.50896 * 14 13 12 31 31 H 1.09006 * 109.89105 * 213.56894 * 14 13 12 32 32 H 1.08995 * 109.53774 * 46.54937 * 22 16 15 33 33 H 1.09002 * 109.53265 * 166.78333 * 22 16 15 34 34 H 1.08997 * 108.75289 * 313.30349 * 23 12 2 35 35 H 1.09003 * 108.75411 * 71.42198 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1483 -1.7841 -1.2246 6 6 2.3438 0.0105 -2.3638 7 7 2.7817 -0.6095 -3.4378 8 14 2.1424 1.8676 -2.3743 9 1 3.3592 2.5007 -1.8051 10 1 1.9471 2.3365 -3.7697 11 1 0.9608 2.2420 -1.5562 12 7 2.0198 -0.6925 1.1994 13 6 3.4901 -0.7948 1.1869 14 6 4.1378 0.4513 1.7427 15 8 4.3829 0.2261 3.1381 16 6 3.3467 0.4185 4.0072 17 1 2.9995 1.4487 3.9290 18 6 3.8317 0.1586 5.4347 19 9 4.8720 1.0422 5.7419 20 9 2.7741 0.3537 6.3295 21 9 4.2926 -1.1583 5.5382 22 6 2.1751 -0.5394 3.6852 23 6 1.4826 -0.0676 2.4291 24 1 -0.3633 -1.0221 0.1065 25 1 -0.3633 0.6033 0.8320 26 1 -0.3634 0.4188 -0.9384 27 1 3.0011 -0.1023 -4.2349 28 1 3.8278 -0.9445 0.1614 29 1 3.7924 -1.6519 1.7886 30 1 3.4694 1.3031 1.6173 31 1 5.0795 0.6412 1.2276 32 1 2.5600 -1.5476 3.5325 33 1 1.4666 -0.5400 4.5136 34 1 1.5964 1.0136 2.3513 35 1 0.4207 -0.3011 2.5058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686834562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:52 Heat of formation + Delta-G solvation = -188.446083 kcal Electronic energy + Delta-G solvation = -22047.824061 eV Core-core repulsion = 18245.258911 eV Total energy + Delta-G solvation = -3802.565150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.13110 -47.67816 -47.56124 -40.01911 -36.64007 -33.26250 -32.51834 -30.80478 -28.16148 -26.91861 -25.36823 -23.64152 -22.01098 -21.11641 -19.09726 -18.61830 -18.27901 -18.14172 -17.08023 -16.28099 -15.90306 -15.34748 -14.67592 -14.44973 -14.42026 -14.11687 -14.04265 -13.97533 -13.75647 -13.74932 -12.95856 -12.73824 -12.46244 -12.17686 -12.10272 -11.78255 -11.42348 -11.15718 -10.95119 -10.74562 -10.64302 -10.33295 -10.23722 -9.84094 -9.63424 -9.18871 -8.69725 -7.37441 -6.19629 -4.18945 2.44374 3.14360 3.26189 3.26552 3.34758 3.80207 3.94028 4.28112 4.49843 4.53273 4.64596 4.88015 5.14603 5.19299 5.44367 5.49415 5.59442 5.70008 5.73986 6.07554 6.14792 6.20633 6.36887 6.45566 6.54141 6.74212 6.89629 7.16966 7.26601 7.51758 7.87747 7.99421 8.53478 8.91723 9.42985 10.92944 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.033775 B = 0.005631 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.818185 B = 4970.872602 C = 5146.243445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.181 3.819 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.083 0.917 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.868 3.132 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.266 1.266 12 N -0.532 5.532 13 C 0.025 3.975 14 C 0.047 3.953 15 O -0.378 6.378 16 C 0.068 3.932 17 H 0.082 0.918 18 C 0.462 3.538 19 F -0.180 7.180 20 F -0.179 7.179 21 F -0.174 7.174 22 C -0.160 4.160 23 C 0.054 3.946 24 H 0.055 0.945 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.265 0.735 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 3.605 15.054 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.075 3.925 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.101 0.899 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.696 3.304 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.258 5.258 13 C -0.103 4.103 14 C -0.029 4.029 15 O -0.297 6.297 16 C 0.007 3.993 17 H 0.100 0.900 18 C 0.408 3.592 19 F -0.161 7.161 20 F -0.160 7.160 21 F -0.156 7.156 22 C -0.198 4.198 23 C -0.073 4.073 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.543 3.109 14.921 15.251 hybrid contribution 0.005 2.008 0.025 2.008 sum 0.548 5.117 14.946 15.807 Atomic orbital electron populations 1.22001 0.97851 1.00548 0.98919 1.19743 0.92256 0.91898 0.88641 0.98444 1.20879 1.43346 0.96178 0.93853 0.89888 1.24988 0.94507 0.97839 0.95591 1.69875 1.44211 1.35902 1.03074 0.87008 0.79147 0.86788 0.77469 1.20324 1.21265 1.19048 1.62181 1.08218 1.54239 1.01135 1.22558 0.87606 0.95649 1.04464 1.23339 1.02486 0.99755 0.77331 1.86328 1.35143 1.89752 1.18489 1.22344 0.90082 1.01133 0.85767 0.90025 1.20390 0.75188 0.74522 0.89110 1.93189 1.59704 1.68922 1.94322 1.93173 1.57195 1.94965 1.70674 1.93195 1.89138 1.36446 1.96775 1.22441 0.96774 1.01139 0.99402 1.21819 0.99891 0.96071 0.89546 0.92626 0.96112 0.93167 0.92459 0.86805 0.90877 0.92577 0.87608 0.88429 0.89674 0.95909 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.56 37.16 0.32 -2.41 16 2 C 0.18 3.95 1.52 -68.87 -0.11 3.85 16 3 H 0.00 -0.04 5.13 -51.93 -0.27 -0.31 16 4 C -0.50 -13.07 7.19 -34.44 -0.25 -13.32 16 5 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.89 -25.77 13.96 55.43 0.77 -24.99 16 8 Si 0.87 20.23 26.53 -169.99 -4.51 15.72 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.27 -5.96 6.76 56.52 0.38 -5.58 16 12 N -0.53 -10.18 4.64 -229.13 -1.06 -11.24 16 13 C 0.03 0.46 5.12 -4.54 -0.02 0.43 16 14 C 0.05 0.75 6.45 36.17 0.23 0.98 16 15 O -0.38 -5.80 9.39 -21.71 -0.20 -6.01 16 16 C 0.07 0.92 2.28 -25.83 -0.06 0.86 16 17 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 18 C 0.46 6.03 2.83 37.15 0.11 6.13 16 19 F -0.18 -2.46 17.24 2.25 0.04 -2.42 16 20 F -0.18 -2.16 16.55 2.25 0.04 -2.12 16 21 F -0.17 -2.44 16.99 2.25 0.04 -2.40 16 22 C -0.16 -2.13 4.78 -26.84 -0.13 -2.26 16 23 C 0.05 0.85 4.14 -4.21 -0.02 0.83 16 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.02 0.36 6.96 -51.93 -0.36 -0.01 16 26 H 0.05 1.05 7.61 -51.93 -0.40 0.66 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.11 2.38 6.29 -51.93 -0.33 2.06 16 29 H 0.07 1.28 7.24 -51.93 -0.38 0.91 16 30 H 0.06 0.92 6.26 -51.93 -0.33 0.59 16 31 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.10 1.41 7.24 -51.93 -0.38 1.04 16 33 H 0.08 0.96 7.44 -51.93 -0.39 0.58 16 34 H 0.02 0.35 6.42 -51.93 -0.33 0.02 16 35 H 0.08 1.19 7.06 -51.93 -0.37 0.82 16 LS Contribution 282.63 15.07 4.26 4.26 Total: -1.00 -27.42 282.63 -4.99 -32.41 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.34 Total: -0.17 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.02 Total: -3.03 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.29 Total: -36.24 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.20 Total: -6.01 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.11 Total: -6.94 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.51 Total: 15.72 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.42 -4.99 -32.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686834562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.040 kcal (2) G-P(sol) polarization free energy of solvation -27.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds