Wall clock time and date at job start Mon Mar 30 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47010 * 2 1 4 4 C 1.50703 * 109.47142 * 240.00489 * 2 1 3 5 5 H 1.08006 * 119.99383 * 274.15791 * 4 2 1 6 6 C 1.37874 * 120.00411 * 94.15948 * 4 2 1 7 7 N 1.31512 * 120.00233 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99908 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47332 * 84.81774 * 8 6 4 10 10 H 1.48497 * 109.47073 * 204.81931 * 8 6 4 11 11 H 1.48509 * 109.47002 * 324.81919 * 8 6 4 12 12 N 1.46900 * 109.47636 * 120.00144 * 2 1 3 13 13 C 1.47393 * 111.00103 * 176.04739 * 12 2 1 14 14 C 1.51041 * 111.55398 * 84.90387 * 13 12 2 15 15 O 1.43449 * 107.56016 * 94.02703 * 14 13 12 16 16 C 1.36609 * 117.84416 * 277.89706 * 15 14 13 17 17 H 1.08995 * 109.21685 * 300.70407 * 16 15 14 18 18 C 1.52994 * 109.21836 * 181.37109 * 16 15 14 19 19 F 1.39908 * 109.46909 * 60.00451 * 18 16 15 20 20 F 1.39902 * 109.47391 * 180.02562 * 18 16 15 21 21 F 1.39901 * 109.47391 * 300.00484 * 18 16 15 22 22 C 1.54720 * 110.78107 * 61.03789 * 16 15 14 23 23 C 1.48029 * 110.99619 * 303.22858 * 12 2 1 24 24 H 1.09000 * 109.46705 * 185.95015 * 1 2 3 25 25 H 1.09001 * 109.47066 * 305.94673 * 1 2 3 26 26 H 1.09000 * 109.47364 * 65.94788 * 1 2 3 27 27 H 0.96996 * 119.99756 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.06483 * 324.36333 * 13 12 2 29 29 H 1.08999 * 109.05967 * 205.43455 * 13 12 2 30 30 H 1.08994 * 109.84493 * 334.50896 * 14 13 12 31 31 H 1.09006 * 109.89105 * 213.56894 * 14 13 12 32 32 H 1.08995 * 109.53774 * 46.54937 * 22 16 15 33 33 H 1.09002 * 109.53265 * 166.78333 * 22 16 15 34 34 H 1.08997 * 108.75289 * 313.30349 * 23 12 2 35 35 H 1.09003 * 108.75411 * 71.42198 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1483 -1.7841 -1.2246 6 6 2.3438 0.0105 -2.3638 7 7 2.7817 -0.6095 -3.4378 8 14 2.1424 1.8676 -2.3743 9 1 3.3592 2.5007 -1.8051 10 1 1.9471 2.3365 -3.7697 11 1 0.9608 2.2420 -1.5562 12 7 2.0198 -0.6925 1.1994 13 6 3.4901 -0.7948 1.1869 14 6 4.1378 0.4513 1.7427 15 8 4.3829 0.2261 3.1381 16 6 3.3467 0.4185 4.0072 17 1 2.9995 1.4487 3.9290 18 6 3.8317 0.1586 5.4347 19 9 4.8720 1.0422 5.7419 20 9 2.7741 0.3537 6.3295 21 9 4.2926 -1.1583 5.5382 22 6 2.1751 -0.5394 3.6852 23 6 1.4826 -0.0676 2.4291 24 1 -0.3633 -1.0221 0.1065 25 1 -0.3633 0.6033 0.8320 26 1 -0.3634 0.4188 -0.9384 27 1 3.0011 -0.1023 -4.2349 28 1 3.8278 -0.9445 0.1614 29 1 3.7924 -1.6519 1.7886 30 1 3.4694 1.3031 1.6173 31 1 5.0795 0.6412 1.2276 32 1 2.5600 -1.5476 3.5325 33 1 1.4666 -0.5400 4.5136 34 1 1.5964 1.0136 2.3513 35 1 0.4207 -0.3011 2.5058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686834562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:52 Heat of formation + Delta-G solvation = -206.674011 kcal Electronic energy + Delta-G solvation = -22048.614483 eV Core-core repulsion = 18245.258911 eV Total energy + Delta-G solvation = -3803.355572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.15354 -48.67816 -48.61454 -41.26874 -38.11738 -34.85868 -34.00673 -32.48101 -29.40053 -28.32744 -27.15124 -24.88653 -23.30616 -22.50153 -20.60979 -19.69648 -19.36457 -19.22665 -18.95424 -17.46020 -17.24801 -16.87899 -16.10024 -15.78725 -15.50915 -15.40426 -15.29222 -15.06526 -14.80506 -14.78142 -14.59429 -14.43258 -13.84006 -13.52518 -13.39924 -13.18202 -12.89683 -12.83259 -12.51850 -12.31194 -11.94032 -11.82184 -11.79984 -11.64678 -11.06664 -10.86618 -10.71693 -8.86025 -8.26677 -6.29530 1.31325 1.36099 1.38433 1.44999 2.26622 2.33373 2.75061 2.90465 2.98075 3.24434 3.46318 3.57873 3.83541 3.92272 4.20977 4.29581 4.32103 4.45391 4.50533 4.56002 4.81326 4.83822 4.89074 5.02286 5.04782 5.15953 5.32159 5.51061 5.69721 6.02698 6.16127 6.41559 6.70361 6.81024 7.36219 8.89897 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.033775 B = 0.005631 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.818185 B = 4970.872602 C = 5146.243445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.185 3.815 3 H 0.000 1.000 4 C -0.497 4.497 5 H 0.035 0.965 6 C 0.018 3.982 7 N -0.945 5.945 8 Si 0.929 3.071 9 H -0.265 1.265 10 H -0.291 1.291 11 H -0.245 1.245 12 N -0.548 5.548 13 C 0.031 3.969 14 C 0.056 3.944 15 O -0.384 6.384 16 C 0.061 3.939 17 H 0.103 0.897 18 C 0.468 3.532 19 F -0.183 7.183 20 F -0.170 7.170 21 F -0.181 7.181 22 C -0.152 4.152 23 C 0.053 3.947 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.033 0.967 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.354 5.564 17.238 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.078 3.922 3 H 0.017 0.983 4 C -0.535 4.535 5 H 0.054 0.946 6 C -0.180 4.180 7 N -0.586 5.586 8 Si 0.754 3.246 9 H -0.190 1.190 10 H -0.217 1.217 11 H -0.169 1.169 12 N -0.273 5.273 13 C -0.097 4.097 14 C -0.020 4.020 15 O -0.303 6.303 16 C 0.000 4.000 17 H 0.120 0.880 18 C 0.414 3.586 19 F -0.165 7.165 20 F -0.151 7.151 21 F -0.163 7.163 22 C -0.190 4.190 23 C -0.074 4.074 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.051 0.949 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.305 5.065 17.148 17.883 hybrid contribution 0.267 1.272 -0.574 1.421 sum -0.039 6.337 16.573 17.744 Atomic orbital electron populations 1.21907 0.96286 1.00953 0.99812 1.19584 0.93334 0.91362 0.87962 0.98261 1.21018 1.42411 0.94220 0.95873 0.94647 1.25769 0.94437 1.02730 0.95085 1.70035 1.46585 1.37907 1.04029 0.86017 0.80217 0.80885 0.77528 1.19042 1.21727 1.16876 1.62032 1.08670 1.54787 1.01824 1.22402 0.87565 0.97235 1.02466 1.23161 1.02750 0.98263 0.77869 1.86322 1.35980 1.89908 1.18098 1.22543 0.89685 1.02274 0.85469 0.87977 1.20271 0.75204 0.74116 0.89025 1.93187 1.59959 1.68997 1.94336 1.93194 1.56707 1.94881 1.70359 1.93187 1.89275 1.37027 1.96807 1.22380 0.97141 1.00207 0.99238 1.21914 1.00504 0.96440 0.88496 0.93113 0.92638 0.94221 0.92592 0.90436 0.90685 0.92254 0.86712 0.89737 0.86936 0.94905 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 8.56 71.98 0.62 -4.39 16 2 C 0.18 7.84 1.52 44.17 0.07 7.91 16 3 H 0.00 -0.01 5.13 -2.39 -0.01 -0.02 16 4 C -0.50 -26.37 7.19 25.60 0.18 -26.19 16 5 H 0.04 2.17 8.06 -2.91 -0.02 2.14 16 6 C 0.02 0.96 5.47 84.65 0.46 1.43 16 7 N -0.95 -56.52 13.96 21.45 0.30 -56.22 16 8 Si 0.93 41.21 26.53 68.60 1.82 43.03 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.25 -9.99 6.76 99.48 0.67 -9.32 16 12 N -0.55 -20.24 4.64 -878.82 -4.08 -24.32 16 13 C 0.03 1.13 5.12 85.57 0.44 1.57 16 14 C 0.06 1.68 6.45 71.34 0.46 2.14 16 15 O -0.38 -10.87 9.39 -100.60 -0.94 -11.82 16 16 C 0.06 1.45 2.28 31.18 0.07 1.52 16 17 H 0.10 2.07 7.72 -2.39 -0.02 2.05 16 18 C 0.47 10.86 2.83 71.98 0.20 11.06 16 19 F -0.18 -4.54 17.24 44.97 0.78 -3.77 16 20 F -0.17 -3.54 16.55 44.97 0.74 -2.79 16 21 F -0.18 -4.69 16.99 44.97 0.76 -3.93 16 22 C -0.15 -3.57 4.78 30.52 0.15 -3.42 16 23 C 0.05 1.49 4.14 85.43 0.35 1.84 16 24 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.05 1.72 6.96 -2.39 -0.02 1.70 16 26 H 0.04 1.57 7.61 -2.39 -0.02 1.55 16 27 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.08 3.37 6.29 -2.39 -0.02 3.35 16 29 H 0.07 2.63 7.24 -2.39 -0.02 2.62 16 30 H 0.06 1.76 6.26 -2.39 -0.01 1.75 16 31 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 32 H 0.08 2.26 7.24 -2.39 -0.02 2.24 16 33 H 0.11 2.07 7.44 -2.39 -0.02 2.05 16 34 H 0.03 0.87 6.42 -2.39 -0.02 0.86 16 35 H 0.09 2.34 7.06 -2.39 -0.02 2.33 16 Total: -1.00 -60.01 282.63 3.46 -56.55 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.07 Total: 9.81 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 3.00 Total: -6.54 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -3.78 Total: -80.54 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.94 Total: -11.82 kcal Atomic # 9 Polarization: -12.77 SS G_CDS: 2.28 Total: -10.49 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.82 Total: 43.03 kcal Total: -60.01 3.46 -56.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686834562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.121 kcal (2) G-P(sol) polarization free energy of solvation -60.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds