Wall clock time and date at job start Mon Mar 30 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46715 * 2 1 4 4 C 1.50699 * 109.47415 * 119.99985 * 2 1 3 5 5 H 1.07998 * 119.99533 * 119.99514 * 4 2 1 6 6 C 1.37877 * 120.00102 * 300.00396 * 4 2 1 7 7 N 1.31510 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99697 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47590 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47404 * 120.00138 * 8 6 4 11 11 H 1.48503 * 109.47239 * 239.99559 * 8 6 4 12 12 N 1.46899 * 109.46897 * 240.00447 * 2 1 3 13 13 C 1.48522 * 110.99690 * 198.11896 * 12 2 1 14 14 C 1.54165 * 111.93743 * 192.47319 * 13 12 2 15 15 O 1.39986 * 113.16841 * 318.77644 * 14 13 12 16 16 C 1.44543 * 112.90625 * 94.45678 * 15 14 13 17 17 H 1.09002 * 109.10570 * 40.92589 * 16 15 14 18 18 C 1.53005 * 109.05772 * 160.00118 * 16 15 14 19 19 F 1.39894 * 109.46828 * 180.91388 * 18 16 15 20 20 F 1.39895 * 109.46978 * 300.92129 * 18 16 15 21 21 F 1.39900 * 109.46621 * 60.92204 * 18 16 15 22 22 C 1.46287 * 111.33804 * 280.44838 * 16 15 14 23 23 C 1.44065 * 111.00134 * 69.99779 * 12 2 1 24 24 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47261 * 299.99865 * 1 2 3 26 26 H 1.08995 * 109.47639 * 59.99608 * 1 2 3 27 27 H 0.97001 * 120.00609 * 180.02562 * 7 6 4 28 28 H 1.09000 * 108.99039 * 313.10735 * 13 12 2 29 29 H 1.09001 * 108.98756 * 71.84065 * 13 12 2 30 30 H 1.09001 * 108.74652 * 79.72336 * 14 13 12 31 31 H 1.08994 * 108.74884 * 197.94121 * 14 13 12 32 32 H 1.08997 * 108.97091 * 180.31531 * 22 16 15 33 33 H 1.09003 * 108.97086 * 299.00322 * 22 16 15 34 34 H 1.09004 * 109.70351 * 99.99787 * 23 12 2 35 35 H 1.08997 * 109.74031 * 339.40139 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3215 -1.1204 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1467 -0.1875 4.8165 11 1 1.1663 -1.5868 4.8160 12 7 2.0196 -0.6924 -1.1995 13 6 3.4395 -1.0971 -1.0381 14 6 4.0668 -1.5427 -2.3739 15 8 3.2073 -2.3281 -3.1512 16 6 2.4646 -1.5571 -4.1223 17 1 3.1241 -0.8106 -4.5650 18 6 1.9586 -2.4929 -5.2219 19 9 1.2559 -1.7519 -6.1780 20 9 3.0463 -3.1278 -5.8309 21 9 1.1108 -3.4547 -4.6620 22 6 1.3230 -0.8818 -3.5054 23 6 1.7579 0.0821 -2.3857 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7095 1.1617 3.4845 28 1 4.0062 -0.2535 -0.6441 29 1 3.4945 -1.9221 -0.3277 30 1 4.3427 -0.6559 -2.9445 31 1 4.9687 -2.1172 -2.1630 32 1 0.7889 -0.3183 -4.2704 33 1 0.6518 -1.6316 -3.0865 34 1 2.6626 0.6106 -2.6865 35 1 0.9615 0.7997 -2.1886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686834563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:55 Heat of formation + Delta-G solvation = -184.332020 kcal Electronic energy + Delta-G solvation = -21924.646442 eV Core-core repulsion = 18122.259691 eV Total energy + Delta-G solvation = -3802.386751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.07434 -47.61679 -47.48246 -39.51876 -36.38899 -33.55065 -32.68928 -29.87158 -28.21472 -26.60983 -25.26296 -23.50990 -21.51995 -21.12962 -19.45202 -18.55112 -18.23136 -18.01318 -16.58949 -16.01150 -15.73424 -14.85788 -14.47925 -14.47121 -14.31213 -14.03196 -13.95477 -13.69312 -13.67060 -13.44896 -13.38031 -12.62369 -12.48293 -12.23607 -11.70445 -11.31881 -11.03469 -10.94211 -10.80843 -10.66256 -10.49009 -10.37629 -10.01750 -9.78708 -9.38509 -8.84370 -8.47436 -7.13827 -6.06017 -4.10966 2.57493 3.26820 3.35349 3.39223 3.42939 3.79967 4.04946 4.37172 4.52201 4.74366 4.91691 5.06805 5.25617 5.28822 5.47483 5.58871 5.60078 5.75701 5.82486 6.14371 6.32376 6.42188 6.68087 6.81186 7.04532 7.10295 7.18512 7.48697 7.74456 7.79866 8.11861 8.28168 8.60706 8.95800 9.55135 11.00836 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.035109 B = 0.005209 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.315562 B = 5374.296632 C = 5678.732291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.216 3.784 3 H -0.001 1.001 4 C -0.512 4.512 5 H 0.067 0.933 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.545 5.545 13 C 0.048 3.952 14 C 0.059 3.941 15 O -0.344 6.344 16 C 0.062 3.938 17 H 0.093 0.907 18 C 0.459 3.541 19 F -0.180 7.180 20 F -0.182 7.182 21 F -0.171 7.171 22 C -0.160 4.160 23 C 0.072 3.928 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.007 0.993 27 H 0.260 0.740 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.027 0.973 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -2.292 -13.831 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.111 3.889 3 H 0.016 0.984 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.271 5.271 13 C -0.079 4.079 14 C -0.018 4.018 15 O -0.262 6.262 16 C 0.003 3.997 17 H 0.110 0.890 18 C 0.404 3.596 19 F -0.162 7.162 20 F -0.163 7.163 21 F -0.153 7.153 22 C -0.198 4.198 23 C -0.058 4.058 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.045 0.955 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.251 -2.807 -13.737 14.393 hybrid contribution 0.642 0.436 0.772 1.095 sum 3.893 -2.371 -12.965 13.743 Atomic orbital electron populations 1.21810 0.97535 0.99735 0.99660 1.19273 0.92430 0.91759 0.85450 0.98382 1.21341 1.31295 1.12461 0.89904 0.91515 1.24941 0.95089 0.95020 0.99097 1.69899 1.36835 1.23016 1.23369 0.86480 0.78637 0.79617 0.82917 1.19714 1.21170 1.20998 1.60686 1.17233 1.45759 1.03402 1.22970 0.88764 1.00775 0.95425 1.22637 0.92132 0.94715 0.92323 1.87806 1.57450 1.32268 1.48662 1.22137 0.97211 0.91403 0.88921 0.88965 1.20448 0.75775 0.80677 0.82669 1.93173 1.79777 1.76863 1.66353 1.93176 1.54719 1.83594 1.84813 1.93209 1.71730 1.65529 1.84808 1.21357 0.97634 1.01203 0.99627 1.21518 0.99683 0.93705 0.90912 0.94630 0.89741 0.97452 0.93012 0.93902 0.89594 0.93829 0.89194 0.90419 0.88519 0.95496 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.99 37.16 0.33 -2.75 16 2 C 0.22 5.25 1.99 -68.87 -0.14 5.11 16 3 H 0.00 -0.04 8.07 -51.93 -0.42 -0.46 16 4 C -0.51 -13.53 7.94 -34.44 -0.27 -13.80 16 5 H 0.07 1.75 5.68 -52.49 -0.30 1.46 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.55 -11.13 4.03 -227.55 -0.92 -12.05 16 13 C 0.05 0.89 4.91 -2.32 -0.01 0.88 16 14 C 0.06 0.87 6.06 37.77 0.23 1.10 16 15 O -0.34 -5.49 10.03 -32.89 -0.33 -5.82 16 16 C 0.06 0.85 2.14 -29.92 -0.06 0.79 16 17 H 0.09 1.04 7.47 -51.93 -0.39 0.65 16 18 C 0.46 6.20 2.82 37.16 0.10 6.31 16 19 F -0.18 -2.25 16.61 2.25 0.04 -2.22 16 20 F -0.18 -2.48 17.24 2.25 0.04 -2.44 16 21 F -0.17 -2.62 16.63 2.25 0.04 -2.58 16 22 C -0.16 -2.33 4.72 -29.40 -0.14 -2.47 16 23 C 0.07 1.21 5.11 -4.81 -0.02 1.18 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 2.22 6.07 -51.92 -0.32 1.90 16 26 H 0.01 0.14 6.60 -51.93 -0.34 -0.20 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 29 H 0.09 1.74 6.30 -51.93 -0.33 1.41 16 30 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.08 0.95 7.58 -51.93 -0.39 0.56 16 33 H 0.10 1.62 7.60 -51.93 -0.39 1.23 16 34 H 0.03 0.42 6.89 -51.93 -0.36 0.06 16 35 H 0.08 1.38 6.11 -51.93 -0.32 1.06 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -28.09 284.27 -5.61 -33.70 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.29 Total: -2.38 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.29 Total: -36.32 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.33 Total: -5.82 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.11 Total: -7.24 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.09 -5.61 -33.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686834563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.632 kcal (2) G-P(sol) polarization free energy of solvation -28.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds