Wall clock time and date at job start Mon Mar 30 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46715 * 2 1 4 4 C 1.50699 * 109.47415 * 119.99985 * 2 1 3 5 5 H 1.07998 * 119.99533 * 119.99514 * 4 2 1 6 6 C 1.37877 * 120.00102 * 300.00396 * 4 2 1 7 7 N 1.31510 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99697 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47590 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47404 * 120.00138 * 8 6 4 11 11 H 1.48503 * 109.47239 * 239.99559 * 8 6 4 12 12 N 1.46899 * 109.46897 * 240.00447 * 2 1 3 13 13 C 1.48522 * 110.99690 * 198.11896 * 12 2 1 14 14 C 1.54165 * 111.93743 * 192.47319 * 13 12 2 15 15 O 1.39986 * 113.16841 * 318.77644 * 14 13 12 16 16 C 1.44543 * 112.90625 * 94.45678 * 15 14 13 17 17 H 1.09002 * 109.10570 * 40.92589 * 16 15 14 18 18 C 1.53005 * 109.05772 * 160.00118 * 16 15 14 19 19 F 1.39894 * 109.46828 * 180.91388 * 18 16 15 20 20 F 1.39895 * 109.46978 * 300.92129 * 18 16 15 21 21 F 1.39900 * 109.46621 * 60.92204 * 18 16 15 22 22 C 1.46287 * 111.33804 * 280.44838 * 16 15 14 23 23 C 1.44065 * 111.00134 * 69.99779 * 12 2 1 24 24 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47261 * 299.99865 * 1 2 3 26 26 H 1.08995 * 109.47639 * 59.99608 * 1 2 3 27 27 H 0.97001 * 120.00609 * 180.02562 * 7 6 4 28 28 H 1.09000 * 108.99039 * 313.10735 * 13 12 2 29 29 H 1.09001 * 108.98756 * 71.84065 * 13 12 2 30 30 H 1.09001 * 108.74652 * 79.72336 * 14 13 12 31 31 H 1.08994 * 108.74884 * 197.94121 * 14 13 12 32 32 H 1.08997 * 108.97091 * 180.31531 * 22 16 15 33 33 H 1.09003 * 108.97086 * 299.00322 * 22 16 15 34 34 H 1.09004 * 109.70351 * 99.99787 * 23 12 2 35 35 H 1.08997 * 109.74031 * 339.40139 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3215 -1.1204 4.0078 9 1 3.1456 -2.2877 3.6036 10 1 3.1467 -0.1875 4.8165 11 1 1.1663 -1.5868 4.8160 12 7 2.0196 -0.6924 -1.1995 13 6 3.4395 -1.0971 -1.0381 14 6 4.0668 -1.5427 -2.3739 15 8 3.2073 -2.3281 -3.1512 16 6 2.4646 -1.5571 -4.1223 17 1 3.1241 -0.8106 -4.5650 18 6 1.9586 -2.4929 -5.2219 19 9 1.2559 -1.7519 -6.1780 20 9 3.0463 -3.1278 -5.8309 21 9 1.1108 -3.4547 -4.6620 22 6 1.3230 -0.8818 -3.5054 23 6 1.7579 0.0821 -2.3857 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.7095 1.1617 3.4845 28 1 4.0062 -0.2535 -0.6441 29 1 3.4945 -1.9221 -0.3277 30 1 4.3427 -0.6559 -2.9445 31 1 4.9687 -2.1172 -2.1630 32 1 0.7889 -0.3183 -4.2704 33 1 0.6518 -1.6316 -3.0865 34 1 2.6626 0.6106 -2.6865 35 1 0.9615 0.7997 -2.1886 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686834563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:55 Heat of formation + Delta-G solvation = -202.189585 kcal Electronic energy + Delta-G solvation = -21925.420804 eV Core-core repulsion = 18122.259691 eV Total energy + Delta-G solvation = -3803.161113 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.13150 -48.64325 -48.58372 -40.78796 -37.95402 -35.02082 -34.33149 -31.63341 -29.53875 -28.07962 -27.13263 -24.80282 -22.82260 -22.59686 -21.09303 -19.63673 -19.32625 -19.11846 -18.28280 -17.47545 -17.29152 -16.32078 -15.96056 -15.58860 -15.44696 -15.32900 -15.11626 -15.03664 -14.85511 -14.75112 -14.73901 -14.01948 -13.94556 -13.82873 -13.24526 -12.98759 -12.66311 -12.53427 -12.46747 -12.29716 -12.16602 -11.89957 -11.61362 -11.47678 -10.80291 -10.67887 -10.50217 -8.77066 -8.11625 -6.22617 1.40295 1.43505 1.51216 1.54081 2.34932 2.42507 2.73185 3.00027 3.16608 3.28813 3.48791 3.85453 3.89940 4.14239 4.17339 4.34361 4.42732 4.46026 4.70417 4.75974 4.82221 4.97185 5.06792 5.11411 5.21111 5.32800 5.53846 5.75362 5.86698 5.99870 6.25644 6.40630 6.89224 6.94838 7.47420 8.94617 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.035109 B = 0.005209 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.315562 B = 5374.296632 C = 5678.732291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.221 3.779 3 H -0.031 1.031 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.555 5.555 13 C 0.047 3.953 14 C 0.067 3.933 15 O -0.363 6.363 16 C 0.059 3.941 17 H 0.127 0.873 18 C 0.463 3.537 19 F -0.172 7.172 20 F -0.181 7.181 21 F -0.185 7.185 22 C -0.150 4.150 23 C 0.068 3.932 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -2.509 -15.231 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.114 3.886 3 H -0.014 1.014 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.281 5.281 13 C -0.081 4.081 14 C -0.011 4.011 15 O -0.281 6.281 16 C 0.000 4.000 17 H 0.145 0.855 18 C 0.409 3.591 19 F -0.154 7.154 20 F -0.162 7.162 21 F -0.167 7.167 22 C -0.188 4.188 23 C -0.061 4.061 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.216 -3.033 -15.162 16.027 hybrid contribution 0.329 0.522 1.152 1.307 sum 4.546 -2.511 -14.010 14.941 Atomic orbital electron populations 1.21620 0.97505 0.98903 0.99534 1.19042 0.92456 0.90226 0.86826 1.01392 1.21652 1.31104 1.12387 0.91106 0.91866 1.25686 0.95370 0.95725 1.01859 1.70018 1.37821 1.24202 1.23916 0.85533 0.78072 0.78668 0.79517 1.19210 1.20656 1.20933 1.60610 1.18554 1.45888 1.03020 1.22980 0.87856 0.99466 0.97766 1.22599 0.91924 0.96207 0.90332 1.87798 1.57860 1.33345 1.49126 1.22308 0.97278 0.91835 0.88596 0.85532 1.20381 0.75564 0.80384 0.82747 1.93191 1.79606 1.76549 1.66017 1.93179 1.54673 1.83625 1.84771 1.93188 1.72203 1.66181 1.85092 1.21235 0.97843 1.00380 0.99387 1.21609 1.00388 0.94029 0.90093 0.95591 0.92351 0.95070 0.93016 0.94845 0.92146 0.91041 0.86920 0.87543 0.90980 0.93410 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.99 71.98 0.65 -5.05 16 2 C 0.22 10.91 1.99 44.17 0.09 11.00 16 3 H -0.03 -1.71 8.07 -2.39 -0.02 -1.72 16 4 C -0.52 -28.21 7.94 25.60 0.20 -28.01 16 5 H 0.06 3.38 5.68 -2.91 -0.02 3.37 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -52.30 11.32 21.45 0.24 -52.06 16 8 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.56 -22.44 4.03 -873.84 -3.53 -25.97 16 13 C 0.05 1.71 4.91 86.38 0.42 2.13 16 14 C 0.07 1.76 6.06 72.38 0.44 2.20 16 15 O -0.36 -10.64 10.03 -140.60 -1.41 -12.05 16 16 C 0.06 1.41 2.14 28.53 0.06 1.47 16 17 H 0.13 2.24 7.47 -2.39 -0.02 2.22 16 18 C 0.46 11.30 2.82 71.98 0.20 11.50 16 19 F -0.17 -3.78 16.61 44.97 0.75 -3.04 16 20 F -0.18 -4.46 17.24 44.97 0.78 -3.69 16 21 F -0.19 -5.37 16.63 44.97 0.75 -4.63 16 22 C -0.15 -4.01 4.72 28.87 0.14 -3.87 16 23 C 0.07 2.16 5.11 87.17 0.45 2.61 16 24 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 3.13 6.07 -2.38 -0.01 3.12 16 26 H 0.03 1.31 6.60 -2.39 -0.02 1.29 16 27 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.03 1.26 8.03 -2.39 -0.02 1.24 16 29 H 0.06 2.46 6.30 -2.39 -0.02 2.45 16 30 H 0.07 1.51 6.57 -2.39 -0.02 1.49 16 31 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.11 2.24 7.58 -2.39 -0.02 2.22 16 33 H 0.07 2.32 7.60 -2.39 -0.02 2.30 16 34 H 0.05 1.33 6.89 -2.39 -0.02 1.32 16 35 H 0.07 2.38 6.11 -2.39 -0.01 2.36 16 Total: -1.00 -60.94 284.27 3.81 -57.13 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 1.11 Total: 3.85 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 3.10 Total: -4.89 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -3.28 Total: -78.02 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.41 Total: -12.05 kcal Atomic # 9 Polarization: -13.62 SS G_CDS: 2.27 Total: -11.35 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -60.94 3.81 -57.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686834563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.058 kcal (2) G-P(sol) polarization free energy of solvation -60.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds